Cenpj (centromere protein J) - Rat Genome Database

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Gene: Cenpj (centromere protein J) Rattus norvegicus
Analyze
Symbol: Cenpj
Name: centromere protein J
RGD ID: 1310464
Description: Predicted to enable several functions, including gamma-tubulin binding activity; identical protein binding activity; and transcription coactivator activity. Predicted to be involved in several processes, including cilium assembly; microtubule cytoskeleton organization; and positive regulation of cell cycle process. Predicted to act upstream of or within several processes, including astral microtubule nucleation; organelle assembly; and positive regulation of non-motile cilium assembly. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be part of procentriole replication complex. Predicted to be active in centriole and centrosome. Human ortholog(s) of this gene implicated in Seckel syndrome 4; primary autosomal recessive microcephaly; and primary autosomal recessive microcephaly 6. Orthologous to human CENPJ (centromere protein J); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305909
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,742,838 - 34,806,020 (-)NCBIGRCr8
mRatBN7.21530,627,206 - 30,690,384 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,627,224 - 30,686,791 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1532,618,561 - 32,678,144 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,769,217 - 33,828,800 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,027,309 - 32,086,891 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,745,672 - 36,809,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,746,088 - 36,798,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,599,733 - 40,658,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,487,198 - 35,550,034 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,503,314 - 35,558,495 (-)NCBI
Celera1530,339,104 - 30,398,973 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
alcohol  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clotrimazole  (EXP)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
flavone  (ISO)
folic acid  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
propanal  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Novel CENPJ mutation causes Seckel syndrome. Al-Dosari MS, etal., J Med Genet. 2010 Jun;47(6):411-4. doi: 10.1136/jmg.2009.076646.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. A novel deletion mutation in CENPJ gene in a Pakistani family with autosomal recessive primary microcephaly. Gul A, etal., J Hum Genet. 2006;51(9):760-4. Epub 2006 Aug 10.
5. Disruption of mouse Cenpj, a regulator of centriole biogenesis, phenocopies Seckel syndrome. McIntyre RE, etal., PLoS Genet. 2012;8(11):e1003022. doi: 10.1371/journal.pgen.1003022. Epub 2012 Nov 15.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11003675   PMID:11984006   PMID:12198240   PMID:15047868   PMID:15793586   PMID:17681131   PMID:20531387   PMID:21399614   PMID:22020124   PMID:23213448   PMID:24076405   PMID:24706806  
PMID:27185865  


Genomics

Comparative Map Data
Cenpj
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,742,838 - 34,806,020 (-)NCBIGRCr8
mRatBN7.21530,627,206 - 30,690,384 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,627,224 - 30,686,791 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1532,618,561 - 32,678,144 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,769,217 - 33,828,800 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,027,309 - 32,086,891 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,745,672 - 36,809,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,746,088 - 36,798,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,599,733 - 40,658,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,487,198 - 35,550,034 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,503,314 - 35,558,495 (-)NCBI
Celera1530,339,104 - 30,398,973 (-)NCBICelera
Cytogenetic Map15p12NCBI
CENPJ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381324,882,279 - 24,934,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1324,882,279 - 24,922,889 (-)EnsemblGRCh38hg38GRCh38
GRCh371325,456,417 - 25,496,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,354,412 - 24,395,085 (-)NCBINCBI36Build 36hg18NCBI36
Build 341324,355,171 - 24,395,018NCBI
Celera136,519,974 - 6,560,638 (-)NCBICelera
Cytogenetic Map13q12.12-q12.13NCBI
HuRef136,269,821 - 6,310,405 (-)NCBIHuRef
CHM1_11325,425,035 - 25,465,641 (-)NCBICHM1_1
T2T-CHM13v2.01324,090,519 - 24,142,252 (-)NCBIT2T-CHM13v2.0
Cenpj
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,764,218 - 56,812,950 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,764,218 - 56,812,882 (-)EnsemblGRCm39 Ensembl
GRCm381456,526,761 - 56,575,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,526,761 - 56,575,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,145,598 - 57,190,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,480,871 - 55,525,942 (-)NCBIMGSCv36mm8
Celera1454,324,537 - 54,369,663 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.28NCBI
Cenpj
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497430,461 - 477,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955497432,595 - 497,335 (-)NCBIChiLan1.0ChiLan1.0
CENPJ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,480,417 - 24,525,024 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11315,589,327 - 15,634,675 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,175,936 - 6,215,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,464,045 - 24,503,432 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,464,045 - 24,503,432 (-)Ensemblpanpan1.1panPan2
CENPJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,555,182 - 18,611,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,557,084 - 18,610,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,583,170 - 18,636,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,692,566 - 18,748,546 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12518,557,406 - 18,610,759 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,569,509 - 18,622,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,626,287 - 18,679,651 (+)NCBIUU_Cfam_GSD_1.0
Cenpj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,601,634 - 120,654,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367202,149,302 - 2,204,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367202,149,296 - 2,201,599 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11289,653 - 355,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111289,660 - 357,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21187,284,454 - 87,296,300 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,319,136 - 4,360,214 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,319,103 - 4,360,158 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605740,088,235 - 40,130,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpj
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477618,182,349 - 18,244,944 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477618,163,924 - 18,245,303 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cenpj
267 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:38
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000065764
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 16 22 6 19 6 41 21 41 11
Low 2 27 35 35 35 8 11 33 14 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000065764   ⟹   ENSRNOP00000061061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,627,224 - 30,686,791 (-)Ensembl
Rnor_6.0 Ensembl1536,746,088 - 36,798,814 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096584   ⟹   ENSRNOP00000080142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,627,229 - 30,686,770 (-)Ensembl
RefSeq Acc Id: NM_001395117   ⟹   NP_001382046
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,742,838 - 34,802,421 (-)NCBI
mRatBN7.21530,627,206 - 30,686,790 (-)NCBI
RefSeq Acc Id: XM_039093307   ⟹   XP_038949235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,742,842 - 34,801,098 (-)NCBI
mRatBN7.21530,627,206 - 30,686,771 (-)NCBI
RefSeq Acc Id: XM_039093309   ⟹   XP_038949237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,742,842 - 34,802,492 (-)NCBI
mRatBN7.21530,627,206 - 30,686,861 (-)NCBI
RefSeq Acc Id: XM_039093311   ⟹   XP_038949239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,742,842 - 34,802,475 (-)NCBI
mRatBN7.21530,627,206 - 30,686,844 (-)NCBI
RefSeq Acc Id: XM_039093312   ⟹   XP_038949240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,742,842 - 34,806,020 (-)NCBI
mRatBN7.21530,627,206 - 30,690,384 (-)NCBI
RefSeq Acc Id: XM_039093313   ⟹   XP_038949241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,742,842 - 34,801,094 (-)NCBI
mRatBN7.21530,627,206 - 30,686,771 (-)NCBI
RefSeq Acc Id: XM_039093315   ⟹   XP_038949243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,754,090 - 34,801,094 (-)NCBI
mRatBN7.21530,638,368 - 30,686,771 (-)NCBI
RefSeq Acc Id: XM_063274261   ⟹   XP_063130331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,743,194 - 34,801,094 (-)NCBI
RefSeq Acc Id: XR_010057815
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,747,167 - 34,801,094 (-)NCBI
RefSeq Acc Id: ENSRNOP00000061061   ⟸   ENSRNOT00000065764
RefSeq Acc Id: XP_038949240   ⟸   XM_039093312
- Peptide Label: isoform X1
- UniProtKB: A6KH99 (UniProtKB/TrEMBL),   D4A194 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949237   ⟸   XM_039093309
- Peptide Label: isoform X1
- UniProtKB: A6KH99 (UniProtKB/TrEMBL),   D4A194 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949239   ⟸   XM_039093311
- Peptide Label: isoform X1
- UniProtKB: A6KH99 (UniProtKB/TrEMBL),   D4A194 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949235   ⟸   XM_039093307
- Peptide Label: isoform X1
- UniProtKB: A6KH99 (UniProtKB/TrEMBL),   D4A194 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949241   ⟸   XM_039093313
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNZ1 (UniProtKB/TrEMBL),   A6KH99 (UniProtKB/TrEMBL),   D4A194 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949243   ⟸   XM_039093315
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000080142   ⟸   ENSRNOT00000096584
RefSeq Acc Id: NP_001382046   ⟸   NM_001395117
- UniProtKB: A6KH99 (UniProtKB/TrEMBL),   D4A194 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130331   ⟸   XM_063274261
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A194-F1-model_v2 AlphaFold D4A194 1-1307 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310464 AgrOrtholog
BioCyc Gene G2FUF-13631 BioCyc
Ensembl Genes ENSRNOG00000022597 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065764 ENTREZGENE
  ENSRNOT00000065764.4 UniProtKB/TrEMBL
  ENSRNOT00000096584.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.450.20 UniProtKB/TrEMBL
InterPro Tcp10/CenJ_C UniProtKB/TrEMBL
  Tcp10_C_sf UniProtKB/TrEMBL
  TCP10_fam UniProtKB/TrEMBL
KEGG Report rno:305909 UniProtKB/TrEMBL
NCBI Gene 305909 ENTREZGENE
PANTHER PTHR10331 UniProtKB/TrEMBL
  PTHR10331:SF23 UniProtKB/TrEMBL
Pfam Tcp10_C UniProtKB/TrEMBL
PhenoGen Cenpj PhenoGen
RatGTEx ENSRNOG00000022597 RatGTEx
UniProt A0A8I5ZNZ1 ENTREZGENE, UniProtKB/TrEMBL
  A6KH99 ENTREZGENE, UniProtKB/TrEMBL
  D4A194 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cenpj  centromere protein J   Cenpj_predicted  centromere protein J (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cenpj_predicted  centromere protein J (predicted)      Symbol and Name status set to approved 70820 APPROVED