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Gene: Shprh (SNF2 histone linker PHD RING helicase) Rattus norvegicus
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Symbol: Shprh
Name: SNF2 histone linker PHD RING helicase
Description: Predicted to have ubiquitin protein ligase activity and ubiquitin protein ligase binding activity. Predicted to be involved in cellular response to DNA damage stimulus and protein polyubiquitination. Predicted to localize to the nucleosome and nucleus. Orthologous to human SHPRH (SNF2 histone linker PHD RING helicase); INTERACTS WITH acrylamide; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: E3 ubiquitin-protein ligase SHPRH; LOC308282; SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase
Orthologs:
Homo sapiens (human) : SHPRH (SNF2 histone linker PHD RING helicase)  HGNC  Alliance
Mus musculus (house mouse) : Shprh (SNF2 histone linker PHD RING helicase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shprh (SNF2 histone linker PHD RING helicase)
Pan paniscus (bonobo/pygmy chimpanzee) : SHPRH (SNF2 histone linker PHD RING helicase)
Canis lupus familiaris (dog) : SHPRH (SNF2 histone linker PHD RING helicase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shprh (SNF2 histone linker PHD RING helicase)
Sus scrofa (pig) : SHPRH (SNF2 histone linker PHD RING helicase)
Chlorocebus sabaeus (African green monkey) : SHPRH (SNF2 histone linker PHD RING helicase)
Heterocephalus glaber (naked mole-rat) : Shprh (SNF2 histone linker PHD RING helicase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.015,240,139 - 5,313,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15,240,180 - 5,313,054 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.016,890,839 - 6,965,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415,846,062 - 5,922,176 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115,848,348 - 5,920,472 (+)NCBI
Celera14,052,730 - 4,125,310 (+)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Shprh
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310342
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.