Slc38a6 (solute carrier family 38, member 6) - Rat Genome Database

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Gene: Slc38a6 (solute carrier family 38, member 6) Rattus norvegicus
Analyze
Symbol: Slc38a6
Name: solute carrier family 38, member 6
RGD ID: 1310330
Description: Predicted to enable L-glutamine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and glutamine transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC38A6 (solute carrier family 38 member 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC299139; N-system amino acid transporter 1; Na(+)-coupled neutral amino acid transporter 6; Na+-dependent neutral amino acid transporter; NAT-1; probable sodium-coupled neutral amino acid transporter 6; Snat6; solute carrier family 38 member 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2691,987,652 - 92,076,416 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl691,987,672 - 92,049,935 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx692,377,382 - 92,439,426 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0692,676,880 - 92,738,925 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0692,104,770 - 92,166,811 (+)NCBIRnor_WKY
Rnor_6.0696,171,756 - 96,241,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl696,171,756 - 96,241,096 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06105,603,543 - 105,670,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4695,715,729 - 95,778,756 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1695,719,184 - 95,782,212 (+)NCBI
Celera690,450,252 - 90,511,348 (+)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24752331  


Genomics

Comparative Map Data
Slc38a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2691,987,652 - 92,076,416 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl691,987,672 - 92,049,935 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx692,377,382 - 92,439,426 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0692,676,880 - 92,738,925 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0692,104,770 - 92,166,811 (+)NCBIRnor_WKY
Rnor_6.0696,171,756 - 96,241,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl696,171,756 - 96,241,096 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06105,603,543 - 105,670,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4695,715,729 - 95,778,756 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1695,719,184 - 95,782,212 (+)NCBI
Celera690,450,252 - 90,511,348 (+)NCBICelera
Cytogenetic Map6q24NCBI
SLC38A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381460,981,245 - 61,083,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1460,981,114 - 61,114,316 (+)EnsemblGRCh38hg38GRCh38
GRCh371461,447,963 - 61,550,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361460,517,633 - 60,588,929 (+)NCBINCBI36Build 36hg18NCBI36
Build 341460,517,632 - 60,588,929NCBI
Celera1441,498,096 - 41,600,701 (+)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1441,611,189 - 41,713,812 (+)NCBIHuRef
CHM1_11461,387,113 - 61,489,815 (+)NCBICHM1_1
T2T-CHM13v2.01455,187,785 - 55,290,408 (+)NCBIT2T-CHM13v2.0
Slc38a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391273,333,622 - 73,408,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1273,333,553 - 73,400,823 (+)EnsemblGRCm39 Ensembl
GRCm381273,286,739 - 73,361,998 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1273,286,779 - 73,354,049 (+)EnsemblGRCm38mm10GRCm38
MGSCv371274,387,842 - 74,453,916 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361274,205,711 - 74,271,794 (+)NCBIMGSCv36mm8
Celera1274,398,188 - 74,460,275 (+)NCBICelera
Cytogenetic Map12C3NCBI
Slc38a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554668,626,848 - 8,679,759 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554668,626,193 - 8,679,764 (-)NCBIChiLan1.0ChiLan1.0
SLC38A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11459,846,569 - 59,918,007 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1459,846,733 - 59,942,839 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01441,587,966 - 41,687,971 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC38A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1835,960,687 - 36,023,434 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl835,960,784 - 36,023,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha835,714,063 - 35,776,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0836,194,095 - 36,266,983 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl836,194,213 - 36,256,924 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1835,804,613 - 35,877,385 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0835,882,082 - 35,954,721 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0836,243,927 - 36,316,501 (+)NCBIUU_Cfam_GSD_1.0
Slc38a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864068,997,056 - 69,053,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364955,137,988 - 5,194,747 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364955,137,988 - 5,194,643 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1189,923,323 - 189,988,552 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11189,923,385 - 189,988,562 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21211,205,607 - 211,293,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12438,173,903 - 38,263,118 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605326,428,470 - 26,486,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473440,076,545 - 40,143,373 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473440,076,545 - 40,143,137 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc38a6
368 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:103
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000029328
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat

Markers in Region
RH133540  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2692,049,734 - 92,049,928 (+)MAPPERmRatBN7.2
Rnor_6.0696,241,310 - 96,241,503NCBIRnor6.0
Rnor_5.06105,670,758 - 105,670,951UniSTSRnor5.0
RGSC_v3.4695,778,970 - 95,779,163UniSTSRGSC3.4
Celera690,511,562 - 90,511,755UniSTS
RH 3.4 Map6657.3UniSTS
Cytogenetic Map6q24UniSTS
BF403384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2691,994,290 - 91,994,383 (+)MAPPERmRatBN7.2
Rnor_6.0696,178,498 - 96,178,590NCBIRnor6.0
Rnor_5.06105,610,285 - 105,610,377UniSTSRnor5.0
RGSC_v3.4695,722,348 - 95,722,440UniSTSRGSC3.4
Celera690,456,871 - 90,456,963UniSTS
RH 3.4 Map6656.79UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5 14 14 2
Low 3 43 57 41 14 41 8 11 60 35 27 9 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY266018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000029328   ⟹   ENSRNOP00000035818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl691,987,693 - 92,049,935 (+)Ensembl
Rnor_6.0 Ensembl696,171,756 - 96,241,096 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100753   ⟹   ENSRNOP00000077661
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl691,987,672 - 92,049,038 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103137   ⟹   ENSRNOP00000085669
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl691,987,693 - 92,049,935 (+)Ensembl
RefSeq Acc Id: NM_001013099   ⟹   NP_001013117
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,672 - 92,049,521 (+)NCBI
Rnor_6.0696,171,756 - 96,241,096 (+)NCBI
Rnor_5.06105,603,543 - 105,670,960 (+)NCBI
RGSC_v3.4695,715,729 - 95,778,756 (+)RGD
Celera690,450,252 - 90,511,348 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240209   ⟹   XP_006240271
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,864 - 92,049,937 (+)NCBI
Rnor_6.0696,171,929 - 96,241,512 (+)NCBI
Rnor_5.06105,603,543 - 105,670,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240210   ⟹   XP_006240272
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,988,031 - 92,049,937 (+)NCBI
Rnor_6.0696,172,093 - 96,241,512 (+)NCBI
Rnor_5.06105,603,543 - 105,670,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112001   ⟹   XP_038967929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,069,711 (+)NCBI
RefSeq Acc Id: XM_039112002   ⟹   XP_038967930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,846 - 92,049,937 (+)NCBI
RefSeq Acc Id: XM_039112003   ⟹   XP_038967931
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,717 - 92,049,937 (+)NCBI
RefSeq Acc Id: XM_039112004   ⟹   XP_038967932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2692,035,577 - 92,049,937 (+)NCBI
RefSeq Acc Id: XM_039112005   ⟹   XP_038967933
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,036,852 (+)NCBI
RefSeq Acc Id: XM_039112006   ⟹   XP_038967934
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,029,705 (+)NCBI
RefSeq Acc Id: XM_039112007   ⟹   XP_038967935
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,032,754 (+)NCBI
RefSeq Acc Id: XR_005505475
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,069,711 (+)NCBI
RefSeq Acc Id: XR_005505476
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,076,416 (+)NCBI
RefSeq Acc Id: XR_005505477
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,046,743 (+)NCBI
RefSeq Acc Id: XR_005505478
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,049,937 (+)NCBI
RefSeq Acc Id: XR_005505479
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,046,743 (+)NCBI
RefSeq Acc Id: XR_005505480
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2691,987,652 - 92,036,214 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001013117   ⟸   NM_001013099
- UniProtKB: Q6WWW3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006240271   ⟸   XM_006240209
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006240272   ⟸   XM_006240210
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000035818   ⟸   ENSRNOT00000029328
RefSeq Acc Id: XP_038967929   ⟸   XM_039112001
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038967933   ⟸   XM_039112005
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038967935   ⟸   XM_039112007
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038967934   ⟸   XM_039112006
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038967931   ⟸   XM_039112003
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038967930   ⟸   XM_039112002
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038967932   ⟸   XM_039112004
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000085669   ⟸   ENSRNOT00000103137
RefSeq Acc Id: ENSRNOP00000077661   ⟸   ENSRNOT00000100753
Protein Domains
Aa_trans

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6WWW3-F1-model_v2 AlphaFold Q6WWW3 1-457 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694665
Promoter ID:EPDNEW_R5189
Type:initiation region
Name:Slc38a6_1
Description:solute carrier family 38, member 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0696,171,724 - 96,171,784EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310330 AgrOrtholog
BioCyc Gene G2FUF-37113 BioCyc
Ensembl Genes ENSRNOG00000022622 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035818 ENTREZGENE
  ENSRNOP00000035818.3 UniProtKB/TrEMBL
  ENSRNOP00000077661.1 UniProtKB/TrEMBL
  ENSRNOP00000085669.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029328 ENTREZGENE
  ENSRNOT00000029328.4 UniProtKB/TrEMBL
  ENSRNOT00000100753 ENTREZGENE
  ENSRNOT00000100753.1 UniProtKB/TrEMBL
  ENSRNOT00000103137.1 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:299139 UniProtKB/Swiss-Prot
NCBI Gene 299139 ENTREZGENE
Pfam Aa_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc38a6 PhenoGen
UniProt A0A8I5XWD5_RAT UniProtKB/TrEMBL
  A0A8I6GD60_RAT UniProtKB/TrEMBL
  F1LRY2_RAT UniProtKB/TrEMBL
  Q6WWW3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Slc38a6  solute carrier family 38, member 6  Slc38a6_predicted  solute carrier family 38, member 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Slc38a6_predicted  solute carrier family 38, member 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED