 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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InterViewer (Protein-Protein Interactions) |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 3. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 24752331 |
Genomics
Comparative Map Data| Slc38a6 (Rattus norvegicus - Norway rat) |
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| SLC38A6 (Homo sapiens - human) |
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| Slc38a6 (Mus musculus - house mouse) |
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| Slc38a6 (Chinchilla lanigera - long-tailed chinchilla) |
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| SLC38A6 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| SLC38A6 (Canis lupus familiaris - dog) |
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| Slc38a6 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| SLC38A6 (Sus scrofa - pig) |
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| SLC38A6 (Chlorocebus sabaeus - African green monkey) |
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| Slc38a6 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| RH133540 |
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| BF403384 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 5 | 14 | 14 | 2 | |||||||||
| Low | 3 | 43 | 57 | 41 | 14 | 41 | 8 | 11 | 60 | 35 | 27 | 9 | 8 |
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001013099 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006240209 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006240210 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07064812 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07064813 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07064814 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07064815 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01045071 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01045072 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AY266018 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000029328 ⟹ ENSRNOP00000035818 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001013099 ⟹ NP_001013117 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
GCGCTTGGGGCTAGGGGAAGCGACTCGCTGATTTACTAGGCAGTCGGTCGCGAAGTACCATGCAhide sequence |
| RefSeq Acc Id: | XM_006240209 ⟹ XP_006240271 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGGCTTCGCTGGCAGTGCTGGGCTACTGCGCTTCGGCATCCTCCAGAGCTTGCAAGAAGAGCCChide sequence |
| RefSeq Acc Id: | XM_006240210 ⟹ XP_006240272 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TTGGAACACCGGCGGGGTGATTGTTTTGTGTCTTTGTCGCCTCTGTTTAAACCCTCTAGACCTGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001013117 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006240271 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006240272 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAP91872 | (Get FASTA) | NCBI Sequence Viewer |
| EDM03612 | (Get FASTA) | NCBI Sequence Viewer | |
| Q6WWW3 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001013117 ⟸ NM_001013099 |
| - UniProtKB: | Q6WWW3 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MQASRYSIEAEPGWYVSVQQPEEAVAAEEWSPLLSNEPRRQGSSGASFGLSVFNVMNAIMGSGIhide sequence |
| RefSeq Acc Id: | XP_006240271 ⟸ XM_006240209 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MNAIMGSGILGLAYVMANTGILGFSFLLLLVALLASYSVHLLLAMCIHTAVTSYEDLGLFAFGLhide sequence |
| RefSeq Acc Id: | XP_006240272 ⟸ XM_006240210 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MNAIMGSGILGLAYVMANTGILGFSFLLLLVALLASYSVHLLLAMCIHTAVTSYEDLGLFAFGLhide sequence |
| RefSeq Acc Id: | ENSRNOP00000035818 ⟸ ENSRNOT00000029328 |
Protein Domains
Aa_trans
TranscriptomePromoters| RGD ID: | 13694665 | ||||||||
| Promoter ID: | EPDNEW_R5189 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Slc38a6_1 | ||||||||
| Description: | solute carrier family 38, member 6 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1310330 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000022622 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000035818 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000029328 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | AA_transpt_TM | UniProtKB/Swiss-Prot |
| KEGG Report | rno:299139 | UniProtKB/Swiss-Prot |
| NCBI Gene | 299139 | ENTREZGENE |
| Pfam | Aa_trans | UniProtKB/Swiss-Prot |
| PhenoGen | Slc38a6 | PhenoGen |
| UniGene | Rn.55589 | ENTREZGENE |
| UniProt | F1LRY2_RAT | UniProtKB/TrEMBL |
| Q6WWW3 | ENTREZGENE, UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2005-12-06 | Slc38a6 | solute carrier family 38, member 6 | Slc38a6_predicted | solute carrier family 38, member 6 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
| 2005-01-12 | Slc38a6_predicted | solute carrier family 38, member 6 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Slc38a6 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1310330 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-06-09 |
| Status: | ACTIVE |
