Gene: Col9a3 (collagen type IX alpha 3 chain) Rattus norvegicus
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Symbol: Col9a3
Name: collagen type IX alpha 3 chain
Description: INVOLVED IN female gonad development (ortholog); male gonad development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Intervertebral Disc Disease (ortholog); multiple epiphyseal dysplasia (ortholog); FOUND IN collagen type IX trimer (ortholog); INTERACTS WITH 17alpha-ethynylestradiol; bisphenol A; lead diacetate
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-3(IX) chain; collagen, type IX, alpha 3; LOC362285; procollagen, type IX, alpha 3
Orthologs:
Homo sapiens (human) : COL9A3 (collagen type IX alpha 3 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col9a3 (collagen, type IX, alpha 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col9a3 (collagen type IX alpha 3 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL9A3 (collagen type IX alpha 3 chain)
Canis lupus familiaris (dog) : COL9A3 (collagen type IX alpha 3 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col9a3 (collagen type IX alpha 3 chain)
Sus scrofa (pig) : COL9A3 (collagen type IX alpha 3 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03176,102,287 - 176,124,839 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03179,803,032 - 179,825,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,704,893 - 169,712,492 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13169,595,025 - 169,618,528 (+)NCBI
Celera3164,848,089 - 164,870,750 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col9a3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310255
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-01-30
Status: ACTIVE