Cryzl1 (crystallin zeta like 1) - Rat Genome Database

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Gene: Cryzl1 (crystallin zeta like 1) Rattus norvegicus
Analyze
Symbol: Cryzl1
Name: crystallin zeta like 1
RGD ID: 1310219
Description: Predicted to enable oxidoreductase activity. Orthologous to human CRYZL1 (crystallin zeta like 1); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: crystallin, zeta (quinone reductase)-like 1; LOC288256; quinone oxidoreductase-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Cryzl1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21130,933,140 - 30,977,936 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,933,144 - 30,977,867 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1139,627,065 - 39,671,779 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01132,298,498 - 32,343,209 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01131,463,616 - 31,505,449 (-)NCBIRnor_WKY
Rnor_6.01131,847,741 - 31,893,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,847,745 - 31,892,531 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,456,474 - 35,498,147 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,662,123 - 31,720,570 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,701,183 - 31,759,442 (-)NCBI
Celera1130,600,542 - 30,637,860 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16780588  


Genomics

Comparative Map Data
Cryzl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21130,933,140 - 30,977,936 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,933,144 - 30,977,867 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1139,627,065 - 39,671,779 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01132,298,498 - 32,343,209 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01131,463,616 - 31,505,449 (-)NCBIRnor_WKY
Rnor_6.01131,847,741 - 31,893,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,847,745 - 31,892,531 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,456,474 - 35,498,147 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,662,123 - 31,720,570 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,701,183 - 31,759,442 (-)NCBI
Celera1130,600,542 - 30,637,860 (-)NCBICelera
Cytogenetic Map11q11NCBI
CRYZL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,589,341 - 33,641,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2133,589,341 - 33,643,926 (-)EnsemblGRCh38hg38GRCh38
GRCh372134,961,647 - 35,014,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,883,517 - 33,936,030 (-)NCBINCBI36Build 36hg18NCBI36
Build 342133,883,519 - 33,935,936NCBI
Celera2120,161,267 - 20,213,781 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2120,440,040 - 20,492,485 (-)NCBIHuRef
CHM1_12134,524,284 - 34,576,624 (-)NCBICHM1_1
T2T-CHM13v2.02131,971,130 - 32,023,555 (-)NCBIT2T-CHM13v2.0
Cryzl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,486,210 - 91,525,690 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1691,486,210 - 91,525,863 (-)EnsemblGRCm39 Ensembl
GRCm381691,689,300 - 91,729,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,689,322 - 91,728,975 (-)EnsemblGRCm38mm10GRCm38
MGSCv371691,689,702 - 91,728,844 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361691,578,316 - 91,617,458 (-)NCBIMGSCv36mm8
Celera1692,768,051 - 92,807,237 (-)NCBICelera
Cytogenetic Map16C4NCBI
Cryzl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540733,015,545 - 33,055,495 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540733,016,289 - 33,055,495 (-)NCBIChiLan1.0ChiLan1.0
CRYZL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12133,328,674 - 33,381,033 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2133,328,674 - 33,381,033 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02119,956,289 - 20,008,741 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CRYZL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13129,109,017 - 29,144,432 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3128,207,857 - 28,243,329 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03128,415,176 - 28,450,718 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3128,415,202 - 28,450,285 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13128,281,951 - 28,317,514 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03128,295,903 - 28,331,424 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03128,795,660 - 28,831,155 (-)NCBIUU_Cfam_GSD_1.0
Cryzl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,756,136 - 28,789,744 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365008,678,212 - 8,711,687 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYZL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13197,203,842 - 197,248,421 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113197,204,473 - 197,248,848 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213207,015,352 - 207,077,229 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYZL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,543,603 - 58,598,133 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,543,882 - 58,598,754 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660711,048,140 - 1,099,754 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cryzl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474521,808,688 - 21,846,880 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474521,807,703 - 21,847,012 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D11Rat24  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,936,605 - 30,936,743 (+)MAPPERmRatBN7.2
Rnor_6.01131,851,206 - 31,851,343NCBIRnor6.0
Rnor_5.01135,459,939 - 35,460,076UniSTSRnor5.0
RGSC_v3.41131,665,587 - 31,665,725RGDRGSC3.4
RGSC_v3.41131,665,588 - 31,665,725UniSTSRGSC3.4
RGSC_v3.11131,704,645 - 31,704,782RGD
Celera1130,604,007 - 30,604,144UniSTS
RH 3.4 Map11176.9RGD
RH 3.4 Map11176.9UniSTS
RH 2.0 Map11458.3RGD
SHRSP x BN Map1112.7099RGD
Cytogenetic Map11q11UniSTS
Cryzl1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,198,660 - 13,198,910 (+)MAPPERmRatBN7.2
Rnor_6.049,809,950 - 9,810,199NCBIRnor6.0
Rnor_5.049,811,083 - 9,811,332UniSTSRnor5.0
RGSC_v3.448,645,715 - 8,645,964UniSTSRGSC3.4
Celera48,790,406 - 8,790,655UniSTS
Cytogenetic Map11q11UniSTS
BE107455  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,941,160 - 30,941,331 (+)MAPPERmRatBN7.2
Rnor_6.01131,855,761 - 31,855,931NCBIRnor6.0
Rnor_5.01135,464,494 - 35,464,664UniSTSRnor5.0
RGSC_v3.41131,670,143 - 31,670,313UniSTSRGSC3.4
Celera1130,608,562 - 30,608,732UniSTS
RH 3.4 Map11176.3UniSTS
Cytogenetic Map11q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:189
Interacting mature miRNAs:203
Transcripts:ENSRNOT00000033745
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 22 8 8 3 8 74 26 36 10
Low 21 49 33 16 33 8 11 9 5 1 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000033745   ⟹   ENSRNOP00000031695
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,933,144 - 30,977,836 (-)Ensembl
Rnor_6.0 Ensembl1131,847,745 - 31,892,531 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095365   ⟹   ENSRNOP00000087034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,933,781 - 30,977,861 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112118   ⟹   ENSRNOP00000093304
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,937,939 - 30,977,867 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119864   ⟹   ENSRNOP00000087103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,933,144 - 30,977,836 (-)Ensembl
RefSeq Acc Id: NM_001013044   ⟹   NP_001013062
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,933,140 - 30,977,836 (-)NCBI
Rnor_6.01131,847,741 - 31,892,531 (-)NCBI
Rnor_5.01135,456,474 - 35,498,147 (-)NCBI
RGSC_v3.41131,662,123 - 31,720,570 (-)RGD
Celera1130,600,542 - 30,637,860 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248045   ⟹   XP_006248107
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,933,391 - 30,977,936 (-)NCBI
Rnor_6.01131,848,377 - 31,893,042 (-)NCBI
Rnor_5.01135,456,474 - 35,498,147 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248046   ⟹   XP_006248108
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,933,391 - 30,960,853 (-)NCBI
Rnor_6.01131,848,377 - 31,875,516 (-)NCBI
Rnor_5.01135,456,474 - 35,498,147 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088211   ⟹   XP_038944139
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,933,391 - 30,960,858 (-)NCBI
RefSeq Acc Id: XR_005491010
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,933,391 - 30,977,936 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001013062 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248107 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944139 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83853 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001013062   ⟸   NM_001013044
- UniProtKB: Q5XI39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248107   ⟸   XM_006248045
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248108   ⟸   XM_006248046
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000031695   ⟸   ENSRNOT00000033745
RefSeq Acc Id: XP_038944139   ⟸   XM_039088211
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000093304   ⟸   ENSRNOT00000112118
RefSeq Acc Id: ENSRNOP00000087034   ⟸   ENSRNOT00000095365
RefSeq Acc Id: ENSRNOP00000087103   ⟸   ENSRNOT00000119864
Protein Domains
PKS_ER

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI39-F1-model_v2 AlphaFold Q5XI39 1-348 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698062
Promoter ID:EPDNEW_R8587
Type:multiple initiation site
Name:Cryzl1_1
Description:crystallin zeta like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01131,892,560 - 31,892,620EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310219 AgrOrtholog
BioCyc Gene G2FUF-21875 BioCyc
Ensembl Genes ENSRNOG00000028014 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000031695 ENTREZGENE
  ENSRNOP00000031695.4 UniProtKB/TrEMBL
  ENSRNOP00000087034 ENTREZGENE
  ENSRNOP00000087034.1 UniProtKB/TrEMBL
  ENSRNOP00000087103.1 UniProtKB/TrEMBL
  ENSRNOP00000093304.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033745 ENTREZGENE
  ENSRNOT00000033745.5 UniProtKB/TrEMBL
  ENSRNOT00000095365 ENTREZGENE
  ENSRNOT00000095365.1 UniProtKB/TrEMBL
  ENSRNOT00000112118.1 UniProtKB/TrEMBL
  ENSRNOT00000119864.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7124012 IMAGE-MGC_LOAD
InterPro ADH_GroES-like UniProtKB/TrEMBL
  CRYZL1 UniProtKB/TrEMBL
  GroES-like UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  PKS_ER UniProtKB/TrEMBL
KEGG Report rno:288256 UniProtKB/TrEMBL
MGC_CLONE MGC:95055 IMAGE-MGC_LOAD
NCBI Gene 288256 ENTREZGENE
PANTHER PTHR44461 UniProtKB/TrEMBL
Pfam ADH_N UniProtKB/TrEMBL
PhenoGen Cryzl1 PhenoGen
SMART PKS_ER UniProtKB/TrEMBL
Superfamily-SCOP GroES_like UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A8I6A2M2_RAT UniProtKB/TrEMBL
  A0A8I6A6J0_RAT UniProtKB/TrEMBL
  A0A8I6AIQ7_RAT UniProtKB/TrEMBL
  Q5XI39 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-09 Cryzl1  crystallin zeta like 1  Cryzl1  crystallin, zeta (quinone reductase)-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cryzl1  crystallin, zeta (quinone reductase)-like 1  Cryzl1_predicted  crystallin, zeta (quinone reductase)-like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cryzl1_predicted  crystallin, zeta (quinone reductase)-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED