Ttc13 (tetratricopeptide repeat domain 13) - Rat Genome Database

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Gene: Ttc13 (tetratricopeptide repeat domain 13) Rattus norvegicus
Analyze
Symbol: Ttc13
Name: tetratricopeptide repeat domain 13
RGD ID: 1310186
Description: Orthologous to human TTC13 (tetratricopeptide repeat domain 13); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292095; tetratricopeptide repeat protein 13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,534,989 - 69,589,590 (-)NCBIGRCr8
mRatBN7.21952,637,599 - 52,692,196 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,637,431 - 52,692,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1959,422,195 - 59,476,849 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01960,274,086 - 60,327,599 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01962,348,659 - 62,403,299 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,429,980 - 57,484,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,429,980 - 57,484,742 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01968,135,050 - 68,189,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,848,488 - 54,904,567 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11954,853,541 - 54,909,433 (-)NCBI
Celera1952,006,329 - 52,060,544 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ttc13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,534,989 - 69,589,590 (-)NCBIGRCr8
mRatBN7.21952,637,599 - 52,692,196 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,637,431 - 52,692,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1959,422,195 - 59,476,849 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01960,274,086 - 60,327,599 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01962,348,659 - 62,403,299 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,429,980 - 57,484,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,429,980 - 57,484,742 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01968,135,050 - 68,189,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,848,488 - 54,904,567 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11954,853,541 - 54,909,433 (-)NCBI
Celera1952,006,329 - 52,060,544 (-)NCBICelera
Cytogenetic Map19q12NCBI
TTC13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,906,243 - 230,978,861 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,906,243 - 230,978,875 (-)EnsemblGRCh38hg38GRCh38
GRCh371231,041,989 - 231,114,607 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361229,108,613 - 229,181,207 (-)NCBINCBI36Build 36hg18NCBI36
Build 341227,348,724 - 227,421,319NCBI
Celera1204,307,932 - 204,380,251 (-)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1201,526,601 - 201,599,336 (-)NCBIHuRef
CHM1_11232,314,940 - 232,387,908 (-)NCBICHM1_1
T2T-CHM13v2.01230,286,691 - 230,359,339 (-)NCBIT2T-CHM13v2.0
Ttc13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398125,398,066 - 125,448,748 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8125,398,071 - 125,448,722 (-)EnsemblGRCm39 Ensembl
GRCm388124,671,327 - 124,722,011 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,671,332 - 124,721,983 (-)EnsemblGRCm38mm10GRCm38
MGSCv378127,195,227 - 127,245,875 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368127,557,417 - 127,608,052 (-)NCBIMGSCv36mm8
Celera8128,969,473 - 129,027,118 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.81NCBI
Ttc13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554927,683,443 - 7,743,718 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554927,683,353 - 7,743,066 (+)NCBIChiLan1.0ChiLan1.0
TTC13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,228,170 - 18,301,034 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,420,701 - 18,493,576 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01206,454,877 - 206,527,628 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11211,481,786 - 211,536,834 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1211,481,786 - 211,536,837 (-)Ensemblpanpan1.1panPan2
TTC13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.148,424,835 - 8,503,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,424,882 - 8,502,600 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha48,416,667 - 8,496,911 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.048,450,010 - 8,529,676 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl48,450,033 - 8,527,678 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.148,453,507 - 8,533,827 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.048,575,523 - 8,655,844 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.048,805,639 - 8,885,928 (+)NCBIUU_Cfam_GSD_1.0
Ttc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,397,582 - 43,455,288 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648419,577,065 - 19,619,800 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648419,574,455 - 19,620,505 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,409,123 - 59,509,549 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11459,409,128 - 59,491,966 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21464,073,719 - 64,156,593 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12568,147,950 - 68,251,017 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605570,081,179 - 70,157,084 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,652,605 - 18,713,965 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477518,652,611 - 18,713,577 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttc13
404 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:685
Count of miRNA genes:298
Interacting mature miRNAs:372
Transcripts:ENSRNOT00000025548
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat

Markers in Region
RH141350  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,637,612 - 52,637,813 (+)MAPPERmRatBN7.2
Rnor_6.01957,430,162 - 57,430,362NCBIRnor6.0
Rnor_5.01968,135,232 - 68,135,432UniSTSRnor5.0
RGSC_v3.41954,848,670 - 54,848,870UniSTSRGSC3.4
Celera1952,006,511 - 52,006,711UniSTS
RH 3.4 Map19736.8UniSTS
Cytogenetic Map19q12UniSTS
BE107052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,640,082 - 52,640,240 (+)MAPPERmRatBN7.2
Rnor_6.01957,432,632 - 57,432,789NCBIRnor6.0
Rnor_5.01968,137,702 - 68,137,859UniSTSRnor5.0
RGSC_v3.41954,851,140 - 54,851,297UniSTSRGSC3.4
Celera1952,008,981 - 52,009,138UniSTS
RH 3.4 Map19723.4UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 29 49 40 18 40 67 28 33 8
Low 14 8 1 1 1 8 11 7 7 8 3 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001136162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY724473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000025548   ⟹   ENSRNOP00000025548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,637,431 - 52,692,183 (-)Ensembl
Rnor_6.0 Ensembl1957,429,980 - 57,484,566 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079783   ⟹   ENSRNOP00000070958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,637,604 - 52,692,198 (-)Ensembl
Rnor_6.0 Ensembl1957,430,131 - 57,484,742 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096284   ⟹   ENSRNOP00000089533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,637,604 - 52,692,198 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097832   ⟹   ENSRNOP00000079791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,637,604 - 52,692,198 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113253   ⟹   ENSRNOP00000090844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,637,431 - 52,692,183 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118217   ⟹   ENSRNOP00000090923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,673,490 - 52,692,198 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118767   ⟹   ENSRNOP00000077631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,637,604 - 52,692,198 (-)Ensembl
RefSeq Acc Id: NM_001136162   ⟹   NP_001129634
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,563 (-)NCBI
mRatBN7.21952,637,599 - 52,692,172 (-)NCBI
Rnor_6.01957,429,980 - 57,484,566 (-)NCBI
Rnor_5.01968,135,050 - 68,189,367 (-)NCBI
RGSC_v3.41954,848,488 - 54,904,567 (-)RGD
Celera1952,006,329 - 52,060,544 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415074   ⟹   NP_001402003
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,563 (-)NCBI
mRatBN7.21952,637,599 - 52,692,172 (-)NCBI
RefSeq Acc Id: NM_001415075   ⟹   NP_001402004
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,563 (-)NCBI
mRatBN7.21952,637,599 - 52,692,172 (-)NCBI
RefSeq Acc Id: XM_006255803   ⟹   XP_006255865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,590 (-)NCBI
mRatBN7.21952,637,607 - 52,692,162 (-)NCBI
Rnor_6.01957,430,148 - 57,484,583 (-)NCBI
Rnor_5.01968,135,050 - 68,189,367 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601247   ⟹   XP_017456736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,589 (-)NCBI
mRatBN7.21952,637,599 - 52,692,196 (-)NCBI
Rnor_6.01957,430,148 - 57,484,583 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097660   ⟹   XP_038953588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,590 (-)NCBI
mRatBN7.21952,637,607 - 52,692,196 (-)NCBI
RefSeq Acc Id: XM_039097661   ⟹   XP_038953589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,589 (-)NCBI
mRatBN7.21952,637,599 - 52,692,196 (-)NCBI
RefSeq Acc Id: XM_039097662   ⟹   XP_038953590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,589 (-)NCBI
mRatBN7.21952,637,599 - 52,692,162 (-)NCBI
RefSeq Acc Id: XM_039097663   ⟹   XP_038953591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,589,589 (-)NCBI
mRatBN7.21952,637,607 - 52,692,162 (-)NCBI
RefSeq Acc Id: XM_039097664   ⟹   XP_038953592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,563,090 (-)NCBI
mRatBN7.21952,637,599 - 52,665,706 (-)NCBI
RefSeq Acc Id: XM_039097665   ⟹   XP_038953593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,534,989 - 69,559,320 (-)NCBI
mRatBN7.21952,637,599 - 52,660,205 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001129634   ⟸   NM_001136162
- Peptide Label: isoform 2 precursor
- UniProtKB: F1LR77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255865   ⟸   XM_006255803
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AC50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456736   ⟸   XM_017601247
- Peptide Label: isoform X2
- UniProtKB: A0A8I5YBY2 (UniProtKB/TrEMBL),   F1LR77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070958   ⟸   ENSRNOT00000079783
RefSeq Acc Id: ENSRNOP00000025548   ⟸   ENSRNOT00000025548
RefSeq Acc Id: XP_038953589   ⟸   XM_039097661
- Peptide Label: isoform X4
- UniProtKB: A6KJ14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953590   ⟸   XM_039097662
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ABT0 (UniProtKB/TrEMBL),   A6KJ14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953592   ⟸   XM_039097664
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038953593   ⟸   XM_039097665
- Peptide Label: isoform X8
- UniProtKB: Q3KR69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953588   ⟸   XM_039097660
- Peptide Label: isoform X3
- UniProtKB: F1LR77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953591   ⟸   XM_039097663
- Peptide Label: isoform X6
- UniProtKB: A6KJ14 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090923   ⟸   ENSRNOT00000118217
RefSeq Acc Id: ENSRNOP00000077631   ⟸   ENSRNOT00000118767
RefSeq Acc Id: ENSRNOP00000089533   ⟸   ENSRNOT00000096284
RefSeq Acc Id: ENSRNOP00000079791   ⟸   ENSRNOT00000097832
RefSeq Acc Id: ENSRNOP00000090844   ⟸   ENSRNOT00000113253
RefSeq Acc Id: NP_001402004   ⟸   NM_001415075
- Peptide Label: isoform 3 precursor
- UniProtKB: F1LR77 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402003   ⟸   NM_001415074
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A0G2JZ94 (UniProtKB/TrEMBL),   A0A8I6AC50 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZ94-F1-model_v2 AlphaFold A0A0G2JZ94 1-845 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701238
Promoter ID:EPDNEW_R11761
Type:multiple initiation site
Name:Ttc13_1
Description:tetratricopeptide repeat domain 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01957,484,555 - 57,484,615EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310186 AgrOrtholog
BioCyc Gene G2FUF-5239 BioCyc
Ensembl Genes ENSRNOG00000018884 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025548 ENTREZGENE
  ENSRNOT00000025548.7 UniProtKB/TrEMBL
  ENSRNOT00000079783 ENTREZGENE
  ENSRNOT00000079783.2 UniProtKB/TrEMBL
  ENSRNOT00000096284.1 UniProtKB/TrEMBL
  ENSRNOT00000097832.1 UniProtKB/TrEMBL
  ENSRNOT00000113253.1 UniProtKB/TrEMBL
  ENSRNOT00000118217.1 UniProtKB/TrEMBL
  ENSRNOT00000118767.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3290.20 UniProtKB/TrEMBL
  1.25.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7379040 IMAGE-MGC_LOAD
  IMAGE:7443849 IMAGE-MGC_LOAD
InterPro TPR-like_helical UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
MGC_CLONE MGC:112895 IMAGE-MGC_LOAD
  MGC:125081 IMAGE-MGC_LOAD
NCBI Gene 292095 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 13 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 13 UniProtKB/TrEMBL
Pfam TPR_1 UniProtKB/TrEMBL
  TPR_16 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PhenoGen Ttc13 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018884 RatGTEx
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0G2JZ94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YBY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNS0_RAT UniProtKB/TrEMBL
  A0A8I6ABT0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AC50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJ88_RAT UniProtKB/TrEMBL
  A6KJ14 ENTREZGENE, UniProtKB/TrEMBL
  A6KJ15_RAT UniProtKB/TrEMBL
  F1LR77 ENTREZGENE, UniProtKB/TrEMBL
  Q3KR69 ENTREZGENE, UniProtKB/TrEMBL
  Q4G015_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ttc13  tetratricopeptide repeat domain 13  Ttc13_predicted  tetratricopeptide repeat domain 13 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ttc13_predicted  tetratricopeptide repeat domain 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED