Gene: Ttc13 (tetratricopeptide repeat domain 13) Rattus norvegicus
Analyze
Symbol:
Ttc13
Name:
tetratricopeptide repeat domain 13
RGD ID:
1310186
Description:
Orthologous to human TTC13 (tetratricopeptide repeat domain 13); INTERACTS WITH 2-methoxyethanol; acrylamide; bisphenol A.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Also known as:
LOC292095; tetratricopeptide repeat protein 13
RGD Orthologs
Alliance Genes
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
TTC13 (tetratricopeptide repeat domain 13)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):
Ttc13 (tetratricopeptide repeat domain 13)
HGNC
Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):
Ttc13 (tetratricopeptide repeat domain 13)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
TTC13 (tetratricopeptide repeat domain 13)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
TTC13 (tetratricopeptide repeat domain 13)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Ttc13 (tetratricopeptide repeat domain 13)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
TTC13 (tetratricopeptide repeat domain 13)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):
TTC13 (tetratricopeptide repeat domain 13)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Ttc13 (tetratricopeptide repeat domain 13)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
TTC13 (tetratricopeptide repeat domain 13)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|TreeFam)
Mus musculus (house mouse):
Ttc13 (tetratricopeptide repeat domain 13)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|TreeFam)
Latest Assembly:
Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl mRatBN7.2 19 52,637,431 - 52,692,196 (-) NCBI Rnor_6.0 Ensembl 19 57,429,980 - 57,484,742 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 19 57,429,980 - 57,484,583 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_5.0 19 68,135,050 - 68,189,367 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 54,848,488 - 54,904,567 (-) NCBI RGSC3.4 rn4 RGSC3.4 RGSC_v3.1 19 54,853,541 - 54,909,433 (-) NCBI Celera 19 52,006,329 - 52,060,544 (-) NCBI Celera Cytogenetic Map 19 q12 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
1,2-dichloroethane decreases expression ISO RGD:1320939 6480464 ethylene dichloride results in decreased expression of TTC13 mRNA CTD PMID:28960355 1,2-dimethylhydrazine multiple interactions ISO RGD:1320939 6480464 [1, 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TTC13 mRNA CTD PMID:22206623 17alpha-ethynylestradiol increases expression ISO RGD:1320939 6480464 Ethinyl Estradiol results in increased expression of TTC13 mRNA CTD PMID:17942748 17alpha-ethynylestradiol multiple interactions ISO RGD:1320939 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TTC13 mRNA CTD PMID:17942748 2,3,7,8-tetrachlorodibenzodioxine multiple interactions ISO RGD:1320939 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TTC13 mRNA CTD PMID:17942748 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO RGD:1320939 6480464 Tetrachlorodibenzodioxin affects the expression of TTC13 mRNA CTD PMID:21570461 2-hydroxypropanoic acid decreases expression ISO RGD:1320938 6480464 Lactic Acid results in decreased expression of TTC13 mRNA CTD PMID:30851411 2-methoxyethanol increases expression EXP 6480464 methyl cellosolve results in increased expression of TTC13 mRNA CTD PMID:21061450 2-methylcholine affects expression ISO RGD:1320938 6480464 beta-methylcholine affects the expression of TTC13 mRNA CTD PMID:21179406 4-hydroxyphenyl retinamide decreases expression ISO RGD:1320939 6480464 Fenretinide results in decreased expression of TTC13 mRNA CTD PMID:28973697 acrylamide increases expression EXP 6480464 Acrylamide results in increased expression of TTC13 mRNA CTD PMID:28959563 benzo[a]pyrene increases expression ISO RGD:1320939 6480464 Benzoapyrene results in increased expression of TTC13 mRNA CTD PMID:25908611 benzo[a]pyrene affects methylation ISO RGD:1320938 6480464 Benzoapyrene affects the methylation of TTC13 promoter CTD PMID:27901495 benzo[b]fluoranthene increases expression ISO RGD:1320939 6480464 benzobfluoranthene results in increased expression of TTC13 mRNA CTD PMID:26377693 bisphenol A affects expression EXP 6480464 bisphenol A affects the expression of TTC13 mRNA CTD PMID:25181051 buspirone decreases expression EXP 6480464 Buspirone results in decreased expression of TTC13 mRNA CTD PMID:24136188 copper atom multiple interactions ISO RGD:1320938 6480464 [Disulfiram binds to Copper] which results in increased expression of TTC13 mRNA CTD PMID:24690739 copper(0) multiple interactions ISO RGD:1320938 6480464 [Disulfiram binds to Copper] which results in increased expression of TTC13 mRNA CTD PMID:24690739 copper(II) sulfate decreases expression ISO RGD:1320938 6480464 Copper Sulfate results in decreased expression of TTC13 mRNA CTD PMID:19549813 crocidolite asbestos increases expression ISO RGD:1320938 6480464 Asbestos, Crocidolite results in increased expression of TTC13 mRNA CTD PMID:29523930 cyclosporin A decreases expression ISO RGD:1320938 6480464 Cyclosporine results in decreased expression of TTC13 mRNA CTD PMID:25562108 disulfiram multiple interactions ISO RGD:1320938 6480464 [Disulfiram binds to Copper] which results in increased expression of TTC13 mRNA CTD PMID:24690739 doxorubicin decreases expression ISO RGD:1320938 6480464 Doxorubicin results in decreased expression of TTC13 mRNA CTD PMID:29803840 fipronil increases expression EXP 6480464 fipronil results in increased expression of TTC13 mRNA CTD PMID:23962444 flutamide decreases expression EXP 6480464 Flutamide results in decreased expression of TTC13 mRNA CTD PMID:24793618 folic acid multiple interactions ISO RGD:1320939 6480464 [1, 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TTC13 mRNA CTD PMID:22206623 gentamycin increases expression EXP 6480464 Gentamicins results in increased expression of TTC13 mRNA CTD PMID:22061828 manganese(II) chloride increases expression EXP 6480464 manganese chloride results in increased expression of TTC13 mRNA CTD PMID:28801915 methapyrilene decreases expression EXP 6480464 Methapyrilene results in decreased expression of TTC13 mRNA CTD PMID:30467583 N-ethyl-N-nitrosourea increases mutagenesis ISO RGD:1320939 6480464 Ethylnitrosourea results in increased mutagenesis of TTC13 mRNA CTD PMID:27776689 nefazodone decreases expression EXP 6480464 nefazodone results in decreased expression of TTC13 mRNA CTD PMID:24136188 nickel sulfate decreases expression ISO RGD:1320938 6480464 nickel sulfate results in decreased expression of TTC13 mRNA CTD PMID:22714537 paracetamol affects expression ISO RGD:1320939 6480464 Acetaminophen affects the expression of TTC13 mRNA CTD PMID:17562736 pentachlorophenol increases expression ISO RGD:1320939 6480464 Pentachlorophenol results in increased expression of TTC13 mRNA CTD PMID:23892564 rac-lactic acid decreases expression ISO RGD:1320938 6480464 Lactic Acid results in decreased expression of TTC13 mRNA CTD PMID:30851411 rotenone decreases expression EXP 6480464 Rotenone results in decreased expression of TTC13 mRNA CTD PMID:28374803 silicon dioxide decreases expression ISO RGD:1320939 6480464 Silicon Dioxide results in decreased expression of TTC13 mRNA CTD PMID:19073995 silicon dioxide decreases expression ISO RGD:1320938 6480464 Silicon Dioxide results in decreased expression of TTC13 mRNA CTD PMID:25351596 sunitinib increases expression ISO RGD:1320938 6480464 Sunitinib results in increased expression of TTC13 mRNA CTD PMID:31533062 valproic acid decreases methylation ISO RGD:1320938 6480464 Valproic Acid results in decreased methylation of TTC13 gene CTD PMID:29154799 valproic acid affects expression ISO RGD:1320939 6480464 Valproic Acid affects the expression of TTC13 mRNA CTD PMID:17963808 valproic acid increases expression ISO RGD:1320938 6480464 Valproic Acid results in increased expression of TTC13 mRNA CTD PMID:23179753 , PMID:29154799 valproic acid affects expression ISO RGD:1320938 6480464 Valproic Acid affects the expression of TTC13 mRNA CTD PMID:25979313
References
Additional References at PubMed
Genomics
Comparative Map Data
Ttc13 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl mRatBN7.2 19 52,637,431 - 52,692,196 (-) NCBI Rnor_6.0 Ensembl 19 57,429,980 - 57,484,742 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 19 57,429,980 - 57,484,583 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_5.0 19 68,135,050 - 68,189,367 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 54,848,488 - 54,904,567 (-) NCBI RGSC3.4 rn4 RGSC3.4 RGSC_v3.1 19 54,853,541 - 54,909,433 (-) NCBI Celera 19 52,006,329 - 52,060,544 (-) NCBI Celera Cytogenetic Map 19 q12 NCBI
TTC13 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38.p13 Ensembl 1 230,906,243 - 230,978,875 (-) Ensembl GRCh38 hg38 GRCh38 GRCh38 1 230,906,243 - 230,978,872 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh37 1 231,041,989 - 231,114,607 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 GRCh37 1 231,041,987 - 231,114,618 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 229,108,613 - 229,181,207 (-) NCBI NCBI36 hg18 NCBI36 Build 34 1 227,348,724 - 227,421,319 NCBI Celera 1 204,307,932 - 204,380,251 (-) NCBI Cytogenetic Map 1 q42.2 NCBI HuRef 1 201,526,601 - 201,599,336 (-) NCBI HuRef CHM1_1 1 232,314,940 - 232,387,908 (-) NCBI CHM1_1
Ttc13 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 125,398,066 - 125,448,748 (-) NCBI GRCm39 mm39 GRCm38 8 124,671,327 - 124,722,011 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 124,671,332 - 124,721,983 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 127,195,227 - 127,245,875 (-) NCBI GRCm37 mm9 NCBIm37 MGSCv36 8 127,557,417 - 127,608,052 (-) NCBI mm8 Celera 8 128,969,473 - 129,027,118 (-) NCBI Celera Cytogenetic Map 8 E2 NCBI
Ttc13 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955492 7,683,443 - 7,743,718 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955492 7,683,353 - 7,743,066 (+) NCBI ChiLan1.0 ChiLan1.0
TTC13 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl PanPan1.1 1 211,481,786 - 211,536,834 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 211,481,786 - 211,536,837 (-) Ensembl panpan1.1 panPan2 Mhudiblu_PPA_v0 1 206,454,877 - 206,527,628 (-) NCBI Mhudiblu_PPA_v0 panPan3
TTC13 (Canis lupus familiaris - dog)
Ttc13 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
TTC13 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 59,409,123 - 59,509,549 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 59,409,128 - 59,491,966 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 64,073,719 - 64,156,593 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
TTC13 (Chlorocebus sabaeus - African green monkey)
Vervet Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 25 68,147,950 - 68,251,017 (-) NCBI
Ttc13 (Heterocephalus glaber - naked mole-rat)
Molerat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HetGla 1.0 NW_004624775 18,652,611 - 18,713,577 (+) NCBI
Position Markers
RH141350
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 19 57,430,162 - 57,430,362 NCBI Rnor6.0 Rnor_5.0 19 68,135,232 - 68,135,432 UniSTS Rnor5.0 RGSC_v3.4 19 54,848,670 - 54,848,870 UniSTS RGSC3.4 Celera 19 52,006,511 - 52,006,711 UniSTS RH 3.4 Map 19 736.8 UniSTS Cytogenetic Map 19 q12 UniSTS
BE107052
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 19 57,432,632 - 57,432,789 NCBI Rnor6.0 Rnor_5.0 19 68,137,702 - 68,137,859 UniSTS Rnor5.0 RGSC_v3.4 19 54,851,140 - 54,851,297 UniSTS RGSC3.4 Celera 19 52,008,981 - 52,009,138 UniSTS RH 3.4 Map 19 723.4 UniSTS Cytogenetic Map 19 q12 UniSTS
QTLs in Region (Rnor_6.0)
724566 Uae12 Urinary albumin excretion QTL 12 5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 2432963 62275575 Rat 1331737 Uae29 Urinary albumin excretion QTL 29 5.5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 6506761 60220581 Rat 1578764 Stresp19 Stress response QTL 19 3.6 0.001 blood renin amount (VT:0003349) plasma renin activity level (CMO:0000116) 19 18993982 62275575 Rat 7411549 Bw130 Body weight QTL 130 5 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 19177495 62275575 Rat 2298478 Eau8 Experimental allergic uveoretinitis QTL 8 0.0163 uvea integrity trait (VT:0010551) experimental autoimmune uveitis score (CMO:0001504) 19 21407787 62275575 Rat 61350 Bp32 Blood pressure QTL 32 0.012 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 19 24818257 62275575 Rat 724546 Kidm3 Kidney mass QTL 3 3.1 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 19 32994392 62275575 Rat 1358200 Insglur2 Insulin/glucose ratio QTL 2 4.1 blood glucose amount (VT:0000188) serum insulin level (CMO:0000358) 19 37916799 60220451 Rat 1358200 Insglur2 Insulin/glucose ratio QTL 2 4.1 blood glucose amount (VT:0000188) serum glucose level (CMO:0000543) 19 37916799 60220451 Rat 5135224 Leukc1 Leukocyte quantity QTL 1 eosinophil quantity (VT:0002602) blood eosinophil count (CMO:0000033) 19 48830712 60220581 Rat 2313395 Anxrr26 Anxiety related response QTL 26 aggression-related behavior trait (VT:0015014) tameness/aggressiveness composite score (CMO:0002136) 19 54735217 58072143 Rat