Ttc13 (tetratricopeptide repeat domain 13)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Ttc13 (tetratricopeptide repeat domain 13) Rattus norvegicus

Analyze

Symbol:

Ttc13

Name:

tetratricopeptide repeat domain 13

RGD ID:

1310186

Description:

Orthologous to human TTC13 (tetratricopeptide repeat domain 13); INTERACTS WITH 2-methoxyethanol; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC292095; tetratricopeptide repeat protein 13

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	52,637,431 - 52,692,196 (-)	NCBI
Rnor_6.0 Ensembl	19	57,429,980 - 57,484,742 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	57,429,980 - 57,484,583 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	54,848,488 - 54,904,567 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	54,853,541 - 54,909,433 (-)	NCBI
Celera	19	52,006,329 - 52,060,544 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

2-methoxyethanol (EXP)

2-methylcholine (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP)

buspirone (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

disulfiram (ISO)

doxorubicin (ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

manganese(II) chloride (EXP)

methapyrilene (EXP)

N-ethyl-N-nitrosourea (ISO)

nefazodone (EXP)

nickel sulfate (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

silicon dioxide (ISO)

sunitinib (ISO)

valproic acid (ISO)

References

References - curated


1.	RGD automated data pipeline
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Ttc13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	52,637,431 - 52,692,196 (-)	NCBI
Rnor_6.0 Ensembl	19	57,429,980 - 57,484,742 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	57,429,980 - 57,484,583 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	54,848,488 - 54,904,567 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	54,853,541 - 54,909,433 (-)	NCBI
Celera	19	52,006,329 - 52,060,544 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

TTC13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	230,906,243 - 230,978,875 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	230,906,243 - 230,978,872 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	231,041,989 - 231,114,607 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	1	231,041,987 - 231,114,618 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	229,108,613 - 229,181,207 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	227,348,724 - 227,421,319	NCBI
Celera	1	204,307,932 - 204,380,251 (-)	NCBI
Cytogenetic Map	1	q42.2	NCBI
HuRef	1	201,526,601 - 201,599,336 (-)	NCBI		HuRef
CHM1_1	1	232,314,940 - 232,387,908 (-)	NCBI		CHM1_1

Ttc13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,398,066 - 125,448,748 (-)	NCBI	GRCm39		mm39
GRCm38	8	124,671,327 - 124,722,011 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,671,332 - 124,721,983 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	127,195,227 - 127,245,875 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	127,557,417 - 127,608,052 (-)	NCBI			mm8
Celera	8	128,969,473 - 129,027,118 (-)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI

Ttc13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	7,683,443 - 7,743,718 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955492	7,683,353 - 7,743,066 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	211,481,786 - 211,536,834 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	211,481,786 - 211,536,837 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	206,454,877 - 206,527,628 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

TTC13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	4	8,424,882 - 8,502,600 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	4	8,424,835 - 8,503,133 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ttc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936484	19,574,455 - 19,620,505 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	59,409,123 - 59,509,549 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	59,409,128 - 59,491,966 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	64,073,719 - 64,156,593 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC13
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	68,147,950 - 68,251,017 (-)	NCBI

Ttc13
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624775	18,652,611 - 18,713,577 (+)	NCBI

Position Markers

RH141350

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	19	57,430,162 - 57,430,362	NCBI	Rnor6.0
Rnor_5.0	19	68,135,232 - 68,135,432	UniSTS	Rnor5.0
RGSC_v3.4	19	54,848,670 - 54,848,870	UniSTS	RGSC3.4
Celera	19	52,006,511 - 52,006,711	UniSTS
RH 3.4 Map	19	736.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

BE107052

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	19	57,432,632 - 57,432,789	NCBI	Rnor6.0
Rnor_5.0	19	68,137,702 - 68,137,859	UniSTS	Rnor5.0
RGSC_v3.4	19	54,851,140 - 54,851,297	UniSTS	RGSC3.4
Celera	19	52,008,981 - 52,009,138	UniSTS
RH 3.4 Map	19	723.4	UniSTS
Cytogenetic Map	19	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2432963	62275575	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	6506761	60220581	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	18993982	62275575	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	19177495	62275575	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	21407787	62275575	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	24818257	62275575	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	32994392	62275575	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	19	37916799	60220451	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	37916799	60220451	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	48830712	60220581	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	54735217	58072143	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	685
Count of miRNA genes:	298
Interacting mature miRNAs:	372
Transcripts:	ENSRNOT00000025548
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	29	49	40	18	40			67	28	33	8
Low		14	8	1	1	1	8	11	7	7	8	3	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001136162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY724473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000025548 ⟹ ENSRNOP00000025548

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	57,429,980 - 57,484,566 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079783 ⟹ ENSRNOP00000070958

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	57,430,131 - 57,484,742 (-)	Ensembl

RefSeq Acc Id:

NM_001136162 ⟹ NP_001129634

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,431 - 52,692,183 (-)	NCBI
Rnor_6.0	19	57,429,980 - 57,484,566 (-)	NCBI
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI
RGSC_v3.4	19	54,848,488 - 54,904,567 (-)	RGD
Celera	19	52,006,329 - 52,060,544 (-)	RGD

Sequence:

show sequence

GCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGGCTGCTCCGGCAGCTTGG
GTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCCTGCGCGCGGGCCACCGA
GCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGCAGCAGCAGGAGGCCCCG
GCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCCGGAGTGCGAGTCGTCAT
TTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCCTGTGACTCGCTGCTCTC
TCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGCAGAAGAGATTCCCGTTT
GCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGTGCTGGTCGGCAGCGGTC
TCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGATTCTGTCCCCTCTGGGACGAAT
TAATGAAGCCGTAAACGATCTCACTAAAGCTATTCAACTTCAGCCCTCAGCACGGCTGTACCGA
CACCGGGGGACCTTGTACTTCATATCCGAGGACTACGCGACAGCCCACGAGGACTTTCAGCAGT
CCTTGGAGCTGAACAGAAACCAGCCCACAGCCATGCTGTACAAAGGCCTAACTTTCTTTCACAG
AGGACTTCTGAAGGAAGCCATCGAGGCCTTCAAAGAAGCTCTGAAACAGAAAGTCGACTTTATC
GATGCCTATAAAAGTCTGGGACAGGCCTACAGAGAACTGGGCAATTTTGAAGCCGCTACCGAGA
GCTTCCAGAAGGCCCTGCTGCTCAACCAGAACCATGTGCAGACCCTGCAGCTCCGGGGCATGAT
GCTCTACCACCATGGCAGCCTGCAGGAGGCCCTGAAGAACTTCAAGCGCTGCCTGCAACTGGAA
CCGTACAACGAAGTGTGCCAGTACATGAAGGGGCTCAGCCATGTGGCAACGGGGCAGTTCTATG
AAGGAATTAAAGCACAGACAAAAGTTATGCTGAACGACCCCCTTCCTGGCCAGAAGGCCAGCCC
AGAGTACCTGCGGGTGAAGTATCTCCGAGAGTATTCTCGGTATCTGCATGCACACCTCGATACT
CCCCTGACGGAATATAACATTGACACGGACCTACCGGGCAGCTTCAAGGACCACTGGGCCAAGA
ACCTACCTTTTCTCATAGACGGCTATGAAGAGCAGCCTGGCCTGCAGCCTCACATCAGGGATGT
GTTACATCAGAATTTCGAGGGCTACAAGCCTGAAGTCCAGGAGCTGATCTGTGTAGCTGACCGC
CTGGGTTCACTGATGCAGTACGAAACACCTGGGTTCCTGCCCAACAAGAGGATACACAGAGCCA
TGGGTCTGGCAGCGCTAGAAGTCATGCAGGCTGTACAGCGAACCTGGACCAACTCAAAAGTCCG
CATGAACGGGAAGACGAGGCTGATGCAGTGGAGGGACATGTTTGACATTGCTGTGAAGTGGAGA
AGGATCGCGGATCCAGACCAGCCGGTGCTGTGGCTGGATCAGATGCCGGCACCCAGTCTCAGCA
GAGGTTTCAACAACCACATCAACCTAATCAGGGGTCAAGTGATTAATATGAGATACCTGGAATA
TTTTGAGAAAATACTTCATTTTATTAAAGACAGGATTCTTGTTTATCATGGAGCAAATAATCCA
AAGGGCTTACTGGAAGTCAGAGAAGCTCTGGAAAAGGTACATAAAGTGGAAGACCTTCTTCCAA
TTATGAAGCAGTTCAATACCAAAACAAAGGACGGGTTCACCGTGAACACCAAAGTACCCAGCCT
CAAAGATCAAGGGAAGGAGTATGACGGCTTCACCATCACCATCACAGGAGACAAGGTCGGCAAT
ATCCTATTTTCTGTGGAAACTCAAACCACAGAAGAGAGGACACAGCTGTATCACGCTGAAATAG
ATGCACTTTATAAGGACCTGACAGCAAAGGGCAAAGTACTGACCCTCTCGGCAGAATTCGGGGA
GGCTGATGCTGTCTGCAACTTAATCTTATCCTTAGTTTATTACTTTTATAATTTAATGCCCCTG
TCTCGAGGATCTAGTGTCATTGCATATTCAGTCATTGTGGGAGCGCTGATGGCCAGTGGCAAAG
AAGTGGCTGGGAAGATCCCCAAAGGGAAGTTAGTCGACTTTGAAGCCATGACAGCCCCTGGCTC
AGAGGCCTTCAGCAAAATAGCGAAAAGCTGGATGAACTTGAAAAGTATCTCCCCTTCCTACAAG
ACCCTGCCATCAGTATCAGAGACGTTCCCGACTCTGAGGTCCATGATCGAGGTGCTCAACACGG
ATTCCACCCCACGGTGTCTAAAGAAACTCTAGCCGGATCAGAGGATTTATACACGTGAAGGGCC
AGGCCTCTCGCTTCTTAAGTTATTTTTTAAGACATGAAATTATTACAGAATTAGGTCCTTTGTT
ACTTTTGATACCAATTTTTGATAGGAATTGAATACTTGAAAACATTTTCTTTACTTTTTCTGAA
CCGTAACAGAAATCATGAAAACGGGTTTTTGGGGAAAAACTACTTGAGCAGGAAGGGAAGTATG
TGTATTAGCGGCAGCCGCTCGGTTCCCATGTGTTGAGGTATACTGTTCCTTCCTCACAGCAAAA
ACATGTTTACTTCAGAAACCAAAAATTAATAATTAAGATGAAGAAAGCCAATACCAGCAGGGCT
TGTCTTCACTGTCAGAGGTGTGGGCGTCCTCAGACCTCCTTCCTGTGCACCTCTGTGGGGTGCC
TCGCTACTGCCATGCCCTCACACGTGGGCCCTCCAGCCCCCCAGAACTGTGGAAGGGCCCCAGC
ATGGCTTGTGGGAAGAAGCACTGGCCAGATGACGACAGTATTTGCCAATCACTGAACCATGTTG
TTCTTTTCTTTGTTGGAAAAAGCAAGCAGAGGTGATTCCCGAAAGTCGCCGAGTTGGGCACTGG
ATTATGTTGTGTTCACGTGTGAGCTGGTTTTGCTTTCGGGTGTCAGAGCGTTTAGAATGTTTCT
TGTTTCCTCAGTCAGGGCGGAAGATGGAGGAACAAGGTCCAGTAAAGGCTGCAGTTTCAAACCG
TGGTCAGTTCTGTAGTTTTGCTCTCGATGTTGTGGCCTTTCGCCTTTCTGTTTTATTTATGTTC
CTGTTCGGATGCTGTAGGTGGAAGCCAGGCTTCTTGCATCCTGGGAAACACTCAGTCACCCAGC
CTCTCAAACTGGCTTCTGCTCTGAACTTCACGCGGTGAGAGC

hide sequence

RefSeq Acc Id:

XM_006255802 ⟹ XP_006255864

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,599 - 52,692,196 (-)	NCBI
Rnor_6.0	19	57,430,148 - 57,484,583 (-)	NCBI
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI

Sequence:

show sequence

GCGGGCAGAGCAGGGCCGCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGG
CTGCTCCGGCAGCTTGGGTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCC
TGCGCGCGGGCCACCGAGCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGC
AGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCC
GGAGTGCGAGTCGTCATTTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCC
TGTGACTCGCTGCTCTCTCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGC
AGAAGAGATTCCCGTTTGCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGT
GCTGGTCGGCAGCGGTCTCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGGAGGAG
CCTGATCTGGTTAGTGCAATTTATGGCCGAGGGATAGCCTATGGAAAGAAGGGACTACATGACA
TTAAGAACGCTGAGCTTGCTTTGTTTGAACTGAGCCGAGTAATTGCCTTGGAACCTGACCGTCC
AGAGGTATTTGAGCAGCGAGCTGAAATTCTGTCCCCTCTGGGACGAATTAATGAAGCCGTAAAC
GATCTCACTAAAGCTATTCAACTTCAGCCCTCAGCACGGCTGTACCGACACCGGGGGACCTTGT
ACTTCATATCCGAGGACTACGCGACAGCCCACGAGGACTTTCAGCAGTCCTTGGAGCTGAACAG
AAACCAGCCCACAGCCATGCTGTACAAAGGCCTAACTTTCTTTCACAGAGGACTTCTGAAGGAA
GCCATCGAGGCCTTCAAAGAAGCTCTGAAACAGAAAGTCGACTTTATCGATGCCTATAAAAGTC
TGGGACAGGCCTACAGAGAACTGGGCAATTTTGAAGCCGCTACCGAGAGCTTCCAGAAGGCCCT
GCTGCTCAACCAGAACCATGTGCAGACCCTGCAGCTCCGGGGCATGATGCTCTACCACCATGGC
AGCCTGCAGGAGGCCCTGAAGAACTTCAAGCGCTGCCTGCAACTGGAACCGTACAACGAAGTGT
GCCAGTACATGAAGGGGCTCAGCCATGTGGCAACGGGGCAGTTCTATGAAGGAATTAAAGCACA
GACAAAAGTTATGCTGAACGACCCCCTTCCTGGCCAGAAGGCCAGCCCAGAGTACCTGCGGGTG
AAGTATCTCCGAGAGTATTCTCGGTATCTGCATGCACACCTCGATACTCCCCTGACGGAATATA
ACATTGACACGGACCTACCGGGCAGCTTCAAGGACCACTGGGCCAAGAACCTACCTTTTCTCAT
AGACGGCTATGAAGAGCAGCCTGGCCTGCAGCCTCACATCAGGGATGTGTTACATCAGAATTTC
GAGGGCTACAAGCCTGAAGTCCAGGAGCTGATCTGTGTAGCTGACCGCCTGGGTTCACTGATGC
AGTACGAAACACCTGGGTTCCTGCCCAACAAGAGGATACACAGAGCCATGGGTCTGGCAGCGCT
AGAAGTCATGCAGGCTGTACAGCGAACCTGGACCAACTCAAAAGTCCGCATGAACGGGAAGACG
AGGCTGATGCAGTGGAGGGACATGTTTGACATTGCTGTGAAGTGGAGAAGGATCGCGGATCCAG
ACCAGCCGGTGCTGTGGCTGGATCAGATGCCGGCACCCAGTCTCAGCAGAGGTTTCAACAACCA
CATCAACCTAATCAGGGGTCAAGTGATTAATATGAGATACCTGGAATATTTTGAGAAAATACTT
CATTTTATTAAAGACAGGATTCTTGTTTATCATGGAGCAAATAATCCAAAGGGCTTACTGGAAG
TCAGAGAAGCTCTGGAAAAGGTACATAAAGTGGAAGACCTTCTTCCAATTATGAAGCAGTTCAA
TACCAAAACAAAGGACGGGTTCACCGTGAACACCAAAGTACCCAGCCTCAAAGATCAAGGGAAG
GAGTATGACGGCTTCACCATCACCATCACAGGAGACAAGGTCGGCAATATCCTATTTTCTGTGG
AAACTCAAACCACAGAAGAGAGGACACAGCTGTATCACGCTGAAATAGATGCACTTTATAAGGA
CCTGACAGCAAAGGGCAAAGTACTGACCCTCTCGGCAGAATTCGGGGAGGCTGATGCTGTCTGC
AACTTAATCTTATCCTTAGTTTATTACTTTTATAATTTAATGCCCCTGTCTCGAGGATCTAGTG
TCATTGCATATTCAGTCATTGTGGGAGCGCTGATGGCCAGTGGCAAAGAAGTGGCTGGGAAGAT
CCCCAAAGGGAAGTTAGTCGACTTTGAAGCCATGACAGCCCCTGGCTCAGAGGCCTTCAGCAAA
ATAGCGAAAAGCTGGATGAACTTGAAAAGTATCTCCCCTTCCTACAAGACCCTGCCATCAGTAT
CAGAGACGTTCCCGACTCTGAGGTCCATGATCGAGGTGCTCAACACGGATTCCACCCCACGGTG
TCTAAAGAAACTCTAGCCGGATCAGAGGATTTATACACGTGAAGGGCCAGGCCTCTCGCTTCTT
AAGTTATTTTTTAAGACATGAAATTATTACAGAATTAGGTCCTTTGTTACTTTTGATACCAATT
TTTGATAGGAATTGAATACTTGAAAACATTTTCTTTACTTTTTCTGAACCGTAACAGAAATCAT
GAAAACGGGTTTTTGGGGAAAAACTACTTGAGCAGGAAGGGAAGTATGTGTATTAGCGGCAGCC
GCTCGGTTCCCATGTGTTGAGGTATACTGTTCCTTCCTCACAGCAAAAACATGTTTACTTCAGA
AACCAAAAATTAATAATTAAGATGAAGAAAGCCAATACCAGCAGGGCTTGTCTTCACTGTCAGA
GGTGTGGGCGTCCTCAGACCTCCTTCCTGTGCACCTCTGTGGGGTGCCTCGCTACTGCCATGCC
CTCACACGTGGGCCCTCCAGCCCCCCAGAACTGTGGAAGGGCCCCAGCATGGCTTGTGGGAAGA
AGCACTGGCCAGATGACGACAGTATTTGCCAATCACTGAACCATGTTGTTCTTTTCTTTGTTGG
AAAAAGCAAGCAGAGGTGATTCCCGAAAGTCGCCGAGTTGGGCACTGGATTATGTTGTGTTCAC
GTGTGAGCTGGTTTTGCTTTCGGGTGTCAGAGCGTTTAGAATGTTTCTTGTTTCCTCAGTCAGG
GCGGAAGATGGAGGAACAAGGTCCAGTAAAGGCTGCAGTTTCAAACCGTG

hide sequence

RefSeq Acc Id:

XM_006255803 ⟹ XP_006255865

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,607 - 52,692,162 (-)	NCBI
Rnor_6.0	19	57,430,148 - 57,484,583 (-)	NCBI
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI

Sequence:

show sequence

GCGGGCAGAGCAGGGCCGCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGG
CTGCTCCGGCAGCTTGGGTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCC
TGCGCGCGGGCCACCGAGCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGC
AGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCC
GGAGTGCGAGTCGTCATTTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCC
TGTGACTCGCTGCTCTCTCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGC
AGAAGAGATTCCCGTTTGCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGT
GCTGGTCGGCAGCGGTCTCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGGAGGAG
CCTGATCTGGTTAGTGCAATTTATGGCCGAGGGATAGCCTATGGAAAGAAGGGACTACATGACA
TTAAGAACGCTGAGCTTGCTTTGTTTGAACTGAGCCGAGTAATTGCCTTGGAACCTGACCGTCC
AGAGGTATTTGAGCAGCGAGCTGAAATTCTGTCCCCTCTGGGACGAATTAATGAAGCCGTAAAC
GATCTCACTAAAGCTATTCAACTTCAGCCCTCAGCACGGCTGTACCGACACCGGGGGACCTTGT
ACTTCATATCCGAGGACTACGCGACAGCCCACGAGGACTTTCAGCAGTCCTTGGAGCTGAACAG
AAACCAGCCCACAGCCATGCTGTACAAAGGCCTAACTTTCTTTCACAGAGGACTTCTGAAGGAA
GCCATCGAGGCCTTCAAAGAAGCTCTGAAACAGAAAGTCGACTTTATCGATGCCTATAAAAGTC
TGGGACAGGCCTACAGAGAACTGGGCAATTTTGAAGCCGCTACCGAGAGCTTCCAGAAGGCCCT
GCTGCTCAACCAGAACCATGTGCAGACCCTGCAGCTCCGGGGCATGATGCTCTACCACCATGGC
AGCCTGCAGGAGGCCCTGAAGAACTTCAAGCGCTGCCTGCAACTGGAACCGTACAACGAAGTGT
GCCAGTACATGAAGGGGCTCAGCCATGTGGCAACGGGGCAGTTCTATGAAGGAATTAAAGCACA
GACAAAAGTTATGCTGAACGACCCCCTTCCTGGCCAGAAGGCCAGCCCAGAGTACCTGCGGGTG
AAGTATCTCCGAGAGTATTCTCGGTATCTGCATGCACACCTCGATACTCCCCTGACGGAATATA
ACATTGACACGGACCTACCGGGCAGCTTCAAGGACCACTGGGCCAAGAACCTACCTTTTCTCAT
AGACGGCTATGAAGAGCAGCCTGGCCTGCAGCCTCACATCAGGGATGTGTTACATCAGAATTTC
GAGGGCTACAAGCCTGAAGTCCAGGAGCTGATCTGTGTAGCTGACCGCCTGGGTTCACTGATGC
AGTACGAAACACCTGGGTTCCTGCCCAACAAGAGGATACACAGAGCCATGGGTCTGGCAGCGCT
AGAAGTCATGCAGGCTGTACAGCGAACCTGGACCAACTCAAAAGTCCGCATGAACGGGAAGACG
AGGCTGATGCAGTGGAGGGACATGTTTGACATTGCTGTGAAGTGGAGAAGGATCGCGGATCCAG
ACCAGCCGGTGCTGTGGCTGGATCAGATGCCGGCACCCAGTCTCAGCAGAGGTTTCAACAACCA
CATCAACCTAATCAGGGGTCAAGTGATTAATATGAGATACCTGGAATATTTTGAGAAAATACTT
CATTTTATTAAAGACAGGATTCTTGTTTATCATGGAGCAAATAATCCAAAGGGCTTACTGGAAG
TCAGAGAAGCTCTGGAAAAGGTACATAAAGTGGAAGACCTTCTTCCAATTATGAAGTTCAATAC
CAAAACAAAGGACGGGTTCACCGTGAACACCAAAGTACCCAGCCTCAAAGATCAAGGGAAGGAG
TATGACGGCTTCACCATCACCATCACAGGAGACAAGGTCGGCAATATCCTATTTTCTGTGGAAA
CTCAAACCACAGAAGAGAGGACACAGCTGTATCACGCTGAAATAGATGCACTTTATAAGGACCT
GACAGCAAAGGGCAAAGTACTGACCCTCTCGGCAGAATTCGGGGAGGCTGATGCTGTCTGCAAC
TTAATCTTATCCTTAGTTTATTACTTTTATAATTTAATGCCCCTGTCTCGAGGATCTAGTGTCA
TTGCATATTCAGTCATTGTGGGAGCGCTGATGGCCAGTGGCAAAGAAGTGGCTGGGAAGATCCC
CAAAGGGAAGTTAGTCGACTTTGAAGCCATGACAGCCCCTGGCTCAGAGGCCTTCAGCAAAATA
GCGAAAAGCTGGATGAACTTGAAAAGTATCTCCCCTTCCTACAAGACCCTGCCATCAGTATCAG
AGACGTTCCCGACTCTGAGGTCCATGATCGAGGTGCTCAACACGGATTCCACCCCACGGTGTCT
AAAGAAACTCTAGCCGGATCAGAGGATTTATACACGTGAAGGGCCAGGCCTCTCGCTTCTTAAG
TTATTTTTTAAGACATGAAATTATTACAGAATTAGGTCCTTTGTTACTTTTGATACCAATTTTT
GATAGGAATTGAATACTTGAAAACATTTTCTTTACTTTTTCTGAACCGTAACAGAAATCATGAA
AACGGGTTTTTGGGGAAAAACTACTTGAGCAGGAAGGGAAGTATGTGTATTAGCGGCAGCCGCT
CGGTTCCCATGTGTTGAGGTATACTGTTCCTTCCTCACAGCAAAAACATGTTTACTTCAGAAAC
CAAAAATTAATAATTAAGATGAAGAAAGCCAATACCAGCAGGGCTTGTCTTCACTGTCAGAGGT
GTGGGCGTCCTCAGACCTCCTTCCTGTGCACCTCTGTGGGGTGCCTCGCTACTGCCATGCCCTC
ACACGTGGGCCCTCCAGCCCCCCAGAACTGTGGAAGGGCCCCAGCATGGCTTGTGGGAAGAAGC
ACTGGCCAGATGACGACAGTATTTGCCAATCACTGAACCATGTTGTTCTTTTCTTTGTTGGAAA
AAGCAAGCAGAGGTGATTCCCGAAAGTCGCCGAGTTGGGCACTGGATTATGTTGTGTTCACGTG
TGAGCTGGTTTTGCTTTCGGGTGTCAGAGCGTTTAGAATGTTTCTTGTTTCCTCAGTCAGGGCG
GAAGATGGAGGAACAAGGTCCAGTAAAGGCTGCAGTTTCAAACCGTG

hide sequence

RefSeq Acc Id:

XM_006255805 ⟹ XP_006255867

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,607 - 52,692,162 (-)	NCBI
Rnor_6.0	19	57,430,148 - 57,484,583 (-)	NCBI
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI

Sequence:

show sequence

GCGGGCAGAGCAGGGCCGCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGG
CTGCTCCGGCAGCTTGGGTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCC
TGCGCGCGGGCCACCGAGCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGC
AGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCC
GGAGTGCGAGTCGTCATTTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCC
TGTGACTCGCTGCTCTCTCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGC
AGAAGAGATTCCCGTTTGCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGT
GCTGGTCGGCAGCGGTCTCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGATTCTG
TCCCCTCTGGGACGAATTAATGAAGCCGTAAACGATCTCACTAAAGCTATTCAACTTCAGCCCT
CAGCACGGCTGTACCGACACCGGGGGACCTTGTACTTCATATCCGAGGACTACGCGACAGCCCA
CGAGGACTTTCAGCAGTCCTTGGAGCTGAACAGAAACCAGCCCACAGCCATGCTGTACAAAGGC
CTAACTTTCTTTCACAGAGGACTTCTGAAGGAAGCCATCGAGGCCTTCAAAGAAGCTCTGAAAC
AGAAAGTCGACTTTATCGATGCCTATAAAAGTCTGGGACAGGCCTACAGAGAACTGGGCAATTT
TGAAGCCGCTACCGAGAGCTTCCAGAAGGCCCTGCTGCTCAACCAGAACCATGTGCAGACCCTG
CAGCTCCGGGGCATGATGCTCTACCACCATGGCAGCCTGCAGGAGGCCCTGAAGAACTTCAAGC
GCTGCCTGCAACTGGAACCGTACAACGAAGTGTGCCAGTACATGAAGGGGCTCAGCCATGTGGC
AACGGGGCAGTTCTATGAAGGAATTAAAGCACAGACAAAAGTTATGCTGAACGACCCCCTTCCT
GGCCAGAAGGCCAGCCCAGAGTACCTGCGGGTGAAGTATCTCCGAGAGTATTCTCGGTATCTGC
ATGCACACCTCGATACTCCCCTGACGGAATATAACATTGACACGGACCTACCGGGCAGCTTCAA
GGACCACTGGGCCAAGAACCTACCTTTTCTCATAGACGGCTATGAAGAGCAGCCTGGCCTGCAG
CCTCACATCAGGGATGTGTTACATCAGAATTTCGAGGGCTACAAGCCTGAAGTCCAGGAGCTGA
TCTGTGTAGCTGACCGCCTGGGTTCACTGATGCAGTACGAAACACCTGGGTTCCTGCCCAACAA
GAGGATACACAGAGCCATGGGTCTGGCAGCGCTAGAAGTCATGCAGGCTGTACAGCGAACCTGG
ACCAACTCAAAAGTCCGCATGAACGGGAAGACGAGGCTGATGCAGTGGAGGGACATGTTTGACA
TTGCTGTGAAGTGGAGAAGGATCGCGGATCCAGACCAGCCGGTGCTGTGGCTGGATCAGATGCC
GGCACCCAGTCTCAGCAGAGGTTTCAACAACCACATCAACCTAATCAGGGGTCAAGTGATTAAT
ATGAGATACCTGGAATATTTTGAGAAAATACTTCATTTTATTAAAGACAGGATTCTTGTTTATC
ATGGAGCAAATAATCCAAAGGGCTTACTGGAAGTCAGAGAAGCTCTGGAAAAGGTACATAAAGT
GGAAGACCTTCTTCCAATTATGAAGTTCAATACCAAAACAAAGGACGGGTTCACCGTGAACACC
AAAGTACCCAGCCTCAAAGATCAAGGGAAGGAGTATGACGGCTTCACCATCACCATCACAGGAG
ACAAGGTCGGCAATATCCTATTTTCTGTGGAAACTCAAACCACAGAAGAGAGGACACAGCTGTA
TCACGCTGAAATAGATGCACTTTATAAGGACCTGACAGCAAAGGGCAAAGTACTGACCCTCTCG
GCAGAATTCGGGGAGGCTGATGCTGTCTGCAACTTAATCTTATCCTTAGTTTATTACTTTTATA
ATTTAATGCCCCTGTCTCGAGGATCTAGTGTCATTGCATATTCAGTCATTGTGGGAGCGCTGAT
GGCCAGTGGCAAAGAAGTGGCTGGGAAGATCCCCAAAGGGAAGTTAGTCGACTTTGAAGCCATG
ACAGCCCCTGGCTCAGAGGCCTTCAGCAAAATAGCGAAAAGCTGGATGAACTTGAAAAGTATCT
CCCCTTCCTACAAGACCCTGCCATCAGTATCAGAGACGTTCCCGACTCTGAGGTCCATGATCGA
GGTGCTCAACACGGATTCCACCCCACGGTGTCTAAAGAAACTCTAGCCGGATCAGAGGATTTAT
ACACGTGAAGGGCCAGGCCTCTCGCTTCTTAAGTTATTTTTTAAGACATGAAATTATTACAGAA
TTAGGTCCTTTGTTACTTTTGATACCAATTTTTGATAGGAATTGAATACTTGAAAACATTTTCT
TTACTTTTTCTGAACCGTAACAGAAATCATGAAAACGGGTTTTTGGGGAAAAACTACTTGAGCA
GGAAGGGAAGTATGTGTATTAGCGGCAGCCGCTCGGTTCCCATGTGTTGAGGTATACTGTTCCT
TCCTCACAGCAAAAACATGTTTACTTCAGAAACCAAAAATTAATAATTAAGATGAAGAAAGCCA
ATACCAGCAGGGCTTGTCTTCACTGTCAGAGGTGTGGGCGTCCTCAGACCTCCTTCCTGTGCAC
CTCTGTGGGGTGCCTCGCTACTGCCATGCCCTCACACGTGGGCCCTCCAGCCCCCCAGAACTGT
GGAAGGGCCCCAGCATGGCTTGTGGGAAGAAGCACTGGCCAGATGACGACAGTATTTGCCAATC
ACTGAACCATGTTGTTCTTTTCTTTGTTGGAAAAAGCAAGCAGAGGTGATTCCCGAAAGTCGCC
GAGTTGGGCACTGGATTATGTTGTGTTCACGTGTGAGCTGGTTTTGCTTTCGGGTGTCAGAGCG
TTTAGAATGTTTCTTGTTTCCTCAGTCAGGGCGGAAGATGGAGGAACAAGGTCCAGTAAAGGCT
GCAGTTTCAAACCGTG

hide sequence

RefSeq Acc Id:

XM_017601247 ⟹ XP_017456736

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,599 - 52,692,196 (-)	NCBI
Rnor_6.0	19	57,430,148 - 57,484,583 (-)	NCBI

Sequence:

show sequence

GCGGGCAGAGCAGGGCCGCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGG
CTGCTCCGGCAGCTTGGGTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCC
TGCGCGCGGGCCACCGAGCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGC
AGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCC
GGAGTGCGAGTCGTCATTTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCC
TGTGACTCGCTGCTCTCTCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGC
AGAAGAGATTCCCGTTTGCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGT
GCTGGTCGGCAGCGGTCTCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGGAGGAG
CCTGATCTGGTTAGTGCAATTTATGGCCGAGGGATAGCCTATGGAAAGAAGGGACTACATATTC
TGTCCCCTCTGGGACGAATTAATGAAGCCGTAAACGATCTCACTAAAGCTATTCAACTTCAGCC
CTCAGCACGGCTGTACCGACACCGGGGGACCTTGTACTTCATATCCGAGGACTACGCGACAGCC
CACGAGGACTTTCAGCAGTCCTTGGAGCTGAACAGAAACCAGCCCACAGCCATGCTGTACAAAG
GCCTAACTTTCTTTCACAGAGGACTTCTGAAGGAAGCCATCGAGGCCTTCAAAGAAGCTCTGAA
ACAGAAAGTCGACTTTATCGATGCCTATAAAAGTCTGGGACAGGCCTACAGAGAACTGGGCAAT
TTTGAAGCCGCTACCGAGAGCTTCCAGAAGGCCCTGCTGCTCAACCAGAACCATGTGCAGACCC
TGCAGCTCCGGGGCATGATGCTCTACCACCATGGCAGCCTGCAGGAGGCCCTGAAGAACTTCAA
GCGCTGCCTGCAACTGGAACCGTACAACGAAGTGTGCCAGTACATGAAGGGGCTCAGCCATGTG
GCAACGGGGCAGTTCTATGAAGGAATTAAAGCACAGACAAAAGTTATGCTGAACGACCCCCTTC
CTGGCCAGAAGGCCAGCCCAGAGTACCTGCGGGTGAAGTATCTCCGAGAGTATTCTCGGTATCT
GCATGCACACCTCGATACTCCCCTGACGGAATATAACATTGACACGGACCTACCGGGCAGCTTC
AAGGACCACTGGGCCAAGAACCTACCTTTTCTCATAGACGGCTATGAAGAGCAGCCTGGCCTGC
AGCCTCACATCAGGGATGTGTTACATCAGAATTTCGAGGGCTACAAGCCTGAAGTCCAGGAGCT
GATCTGTGTAGCTGACCGCCTGGGTTCACTGATGCAGTACGAAACACCTGGGTTCCTGCCCAAC
AAGAGGATACACAGAGCCATGGGTCTGGCAGCGCTAGAAGTCATGCAGGCTGTACAGCGAACCT
GGACCAACTCAAAAGTCCGCATGAACGGGAAGACGAGGCTGATGCAGTGGAGGGACATGTTTGA
CATTGCTGTGAAGTGGAGAAGGATCGCGGATCCAGACCAGCCGGTGCTGTGGCTGGATCAGATG
CCGGCACCCAGTCTCAGCAGAGGTTTCAACAACCACATCAACCTAATCAGGGGTCAAGTGATTA
ATATGAGATACCTGGAATATTTTGAGAAAATACTTCATTTTATTAAAGACAGGATTCTTGTTTA
TCATGGAGCAAATAATCCAAAGGGCTTACTGGAAGTCAGAGAAGCTCTGGAAAAGGTACATAAA
GTGGAAGACCTTCTTCCAATTATGAAGCAGTTCAATACCAAAACAAAGGACGGGTTCACCGTGA
ACACCAAAGTACCCAGCCTCAAAGATCAAGGGAAGGAGTATGACGGCTTCACCATCACCATCAC
AGGAGACAAGGTCGGCAATATCCTATTTTCTGTGGAAACTCAAACCACAGAAGAGAGGACACAG
CTGTATCACGCTGAAATAGATGCACTTTATAAGGACCTGACAGCAAAGGGCAAAGTACTGACCC
TCTCGGCAGAATTCGGGGAGGCTGATGCTGTCTGCAACTTAATCTTATCCTTAGTTTATTACTT
TTATAATTTAATGCCCCTGTCTCGAGGATCTAGTGTCATTGCATATTCAGTCATTGTGGGAGCG
CTGATGGCCAGTGGCAAAGAAGTGGCTGGGAAGATCCCCAAAGGGAAGTTAGTCGACTTTGAAG
CCATGACAGCCCCTGGCTCAGAGGCCTTCAGCAAAATAGCGAAAAGCTGGATGAACTTGAAAAG
TATCTCCCCTTCCTACAAGACCCTGCCATCAGTATCAGAGACGTTCCCGACTCTGAGGTCCATG
ATCGAGGTGCTCAACACGGATTCCACCCCACGGTGTCTAAAGAAACTCTAGCCGGATCAGAGGA
TTTATACACGTGAAGGGCCAGGCCTCTCGCTTCTTAAGTTATTTTTTAAGACATGAAATTATTA
CAGAATTAGGTCCTTTGTTACTTTTGATACCAATTTTTGATAGGAATTGAATACTTGAAAACAT
TTTCTTTACTTTTTCTGAACCGTAACAGAAATCATGAAAACGGGTTTTTGGGGAAAAACTACTT
GAGCAGGAAGGGAAGTATGTGTATTAGCGGCAGCCGCTCGGTTCCCATGTGTTGAGGTATACTG
TTCCTTCCTCACAGCAAAAACATGTTTACTTCAGAAACCAAAAATTAATAATTAAGATGAAGAA
AGCCAATACCAGCAGGGCTTGTCTTCACTGTCAGAGGTGTGGGCGTCCTCAGACCTCCTTCCTG
TGCACCTCTGTGGGGTGCCTCGCTACTGCCATGCCCTCACACGTGGGCCCTCCAGCCCCCCAGA
ACTGTGGAAGGGCCCCAGCATGGCTTGTGGGAAGAAGCACTGGCCAGATGACGACAGTATTTGC
CAATCACTGAACCATGTTGTTCTTTTCTTTGTTGGAAAAAGCAAGCAGAGGTGATTCCCGAAAG
TCGCCGAGTTGGGCACTGGATTATGTTGTGTTCACGTGTGAGCTGGTTTTGCTTTCGGGTGTCA
GAGCGTTTAGAATGTTTCTTGTTTCCTCAGTCAGGGCGGAAGATGGAGGAACAAGGTCCAGTAA
AGGCTGCAGTTTCAAACCGTG

hide sequence

RefSeq Acc Id:

XM_039097660 ⟹ XP_038953588

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,607 - 52,692,196 (-)	NCBI

RefSeq Acc Id:

XM_039097661 ⟹ XP_038953589

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,599 - 52,692,196 (-)	NCBI

RefSeq Acc Id:

XM_039097662 ⟹ XP_038953590

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,599 - 52,692,162 (-)	NCBI

RefSeq Acc Id:

XM_039097663 ⟹ XP_038953591

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,607 - 52,692,162 (-)	NCBI

RefSeq Acc Id:

XM_039097664 ⟹ XP_038953592

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,599 - 52,665,706 (-)	NCBI

RefSeq Acc Id:

XM_039097665 ⟹ XP_038953593

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	52,637,599 - 52,660,205 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001129634	(Get FASTA)	NCBI Sequence Viewer
	XP_006255864	(Get FASTA)	NCBI Sequence Viewer
	XP_006255865	(Get FASTA)	NCBI Sequence Viewer
	XP_006255867	(Get FASTA)	NCBI Sequence Viewer
	XP_017456736	(Get FASTA)	NCBI Sequence Viewer
	XP_038953588	(Get FASTA)	NCBI Sequence Viewer
	XP_038953589	(Get FASTA)	NCBI Sequence Viewer
	XP_038953590	(Get FASTA)	NCBI Sequence Viewer
	XP_038953591	(Get FASTA)	NCBI Sequence Viewer
	XP_038953592	(Get FASTA)	NCBI Sequence Viewer
	XP_038953593	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98840	(Get FASTA)	NCBI Sequence Viewer
	AAI05872	(Get FASTA)	NCBI Sequence Viewer
	EDL96736	(Get FASTA)	NCBI Sequence Viewer
	EDL96737	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001129634 ⟸ NM_001136162
- Peptide Label:	precursor
- UniProtKB:	F1LR77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST NEELAIAYVLVGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYF ISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLG QAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQ YMKGLSHVATGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNI DTDLPGSFKDHWAKNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQY ETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQ PVLWLDQMPAPSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVR EALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVET QTTEERTQLYHAEIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSLVYYFYNLMPLSRGSSVI AYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSE TFPTLRSMIEVLNTDSTPRCLKKL hide sequence

RefSeq Acc Id:

XP_006255865 ⟸ XM_006255803

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ
SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST
NEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSR
VIALEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHED
FQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFEA
ATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVATG
QFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNIDTDLPGSFKDH
WAKNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQYETPGFLPNKRI
HRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAP
SLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVED
LLPIMKFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHA
EIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMAS
GKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVL
NTDSTPRCLKKL

hide sequence

RefSeq Acc Id:

XP_006255867 ⟸ XM_006255805

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ
SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST
NEELAIAYVLVGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYF
ISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLG
QAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQ
YMKGLSHVATGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNI
DTDLPGSFKDHWAKNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQY
ETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQ
PVLWLDQMPAPSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVR
EALEKVHKVEDLLPIMKFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQ
TTEERTQLYHAEIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIA
YSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSET
FPTLRSMIEVLNTDSTPRCLKKL

hide sequence

RefSeq Acc Id:	XP_006255864 ⟸ XM_006255802
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZ94 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST NEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSR VIALEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHED FQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFEA ATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVATG QFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNIDTDLPGSFKDH WAKNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQYETPGFLPNKRI HRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAP SLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVED LLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYH AEIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMA SGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEV LNTDSTPRCLKKL hide sequence

RefSeq Acc Id:

XP_017456736 ⟸ XM_017601247

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ
SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST
NEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHILSPLGRINEAVND
LTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEA
IEAFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGS
LQEALKNFKRCLQLEPYNEVCQYMKGLSHVATGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVK
YLREYSRYLHAHLDTPLTEYNIDTDLPGSFKDHWAKNLPFLIDGYEEQPGLQPHIRDVLHQNFE
GYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTR
LMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAPSLSRGFNNHINLIRGQVINMRYLEYFEKILH
FIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKE
YDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLTLSAEFGEADAVCN
LILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKI
AKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSTPRCLKKL

hide sequence

RefSeq Acc Id:

ENSRNOP00000070958 ⟸ ENSRNOT00000079783

RefSeq Acc Id:

ENSRNOP00000025548 ⟸ ENSRNOT00000025548

RefSeq Acc Id:	XP_038953589 ⟸ XM_039097661
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038953590 ⟸ XM_039097662
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038953592 ⟸ XM_039097664
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038953593 ⟸ XM_039097665
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038953588 ⟸ XM_039097660
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038953591 ⟸ XM_039097663
- Peptide Label:	isoform X8

Protein Domains

TPR_REGION

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701238

Promoter ID:

EPDNEW_R11761

Type:

multiple initiation site

Name:

Ttc13_1

Description:

tetratricopeptide repeat domain 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	57,484,555 - 57,484,615	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
19	68146399	68146400	T	G	snv	ACI/EurMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
19	54861059	54861060	T	G	snv	ACI/EurMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310186	AgrOrtholog
Ensembl Genes	ENSRNOG00000018884	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000025548	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000070958	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025548	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000079783	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7379040	IMAGE-MGC_LOAD
	IMAGE:7443849	IMAGE-MGC_LOAD
InterPro	TPR-contain_dom	UniProtKB/TrEMBL
	TPR-like_helical	UniProtKB/TrEMBL
	TPR_1	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
KEGG Report	rno:292095	UniProtKB/TrEMBL
MGC_CLONE	MGC:112895	IMAGE-MGC_LOAD
	MGC:125081	IMAGE-MGC_LOAD
NCBI Gene	292095	ENTREZGENE
Pfam	TPR_1	UniProtKB/TrEMBL
	TPR_8	UniProtKB/TrEMBL
PhenoGen	Ttc13	PhenoGen
PROSITE	TPR	UniProtKB/TrEMBL
	TPR_REGION	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A0G2JZ94	ENTREZGENE, UniProtKB/TrEMBL
	F1LR77	ENTREZGENE, UniProtKB/TrEMBL
	Q3KR69_RAT	UniProtKB/TrEMBL
	Q4G015_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ttc13	tetratricopeptide repeat domain 13	Ttc13_predicted	tetratricopeptide repeat domain 13 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ttc13_predicted	tetratricopeptide repeat domain 13 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)