Arsk (arylsulfatase family, member K) - Rat Genome Database

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Gene: Arsk (arylsulfatase family, member K) Rattus norvegicus
Analyze
Symbol: Arsk
Name: arylsulfatase family, member K
RGD ID: 1310182
Description: Predicted to enable arylsulfatase activity and glucuronate-2-sulfatase activity. Predicted to be located in extracellular region and lysosome. Human ortholog(s) of this gene implicated in mucopolysaccharidosis. Orthologous to human ARSK (arylsulfatase family member K); INTERACTS WITH atrazine; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: arylsulfatase K; ASK; glucuronate-2-sulfatase; LOC365619; RGD1310182; similar to RIKEN cDNA 2810429K17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.225,575,727 - 5,631,370 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl25,574,322 - 5,631,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx212,682,660 - 12,736,395 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0210,781,895 - 10,835,628 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.025,418,263 - 5,473,902 (-)NCBIRnor_WKY
Rnor_6.022,835,568 - 2,891,059 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl22,834,355 - 2,891,253 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.022,834,700 - 2,891,776 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.423,125,172 - 3,181,562 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.123,143,731 - 3,203,059 (-)NCBI
Celera22,045,215 - 2,100,520 (-)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
extracellular region  (ISO,ISS)
lysosome  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16174644  


Genomics

Comparative Map Data
Arsk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.225,575,727 - 5,631,370 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl25,574,322 - 5,631,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx212,682,660 - 12,736,395 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0210,781,895 - 10,835,628 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.025,418,263 - 5,473,902 (-)NCBIRnor_WKY
Rnor_6.022,835,568 - 2,891,059 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl22,834,355 - 2,891,253 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.022,834,700 - 2,891,776 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.423,125,172 - 3,181,562 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.123,143,731 - 3,203,059 (-)NCBI
Celera22,045,215 - 2,100,520 (-)NCBICelera
Cytogenetic Map2q11NCBI
ARSK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38595,555,101 - 95,605,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl595,555,101 - 95,605,102 (+)EnsemblGRCh38hg38GRCh38
GRCh37594,890,805 - 94,940,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36594,916,581 - 94,966,562 (+)NCBINCBI36Build 36hg18NCBI36
Celera590,769,262 - 90,819,241 (+)NCBICelera
Cytogenetic Map5q15NCBI
HuRef590,081,026 - 90,130,924 (+)NCBIHuRef
CHM1_1594,323,502 - 94,373,480 (+)NCBICHM1_1
T2T-CHM13v2.0596,056,040 - 96,106,030 (+)NCBIT2T-CHM13v2.0
Arsk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391376,208,541 - 76,246,794 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1376,208,541 - 76,246,779 (-)EnsemblGRCm39 Ensembl
GRCm381376,060,422 - 76,098,660 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1376,060,422 - 76,098,660 (-)EnsemblGRCm38mm10GRCm38
MGSCv371376,197,870 - 76,236,108 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361376,526,884 - 76,564,613 (-)NCBIMGSCv36mm8
Celera1378,379,696 - 78,412,789 (-)NCBICelera
Cytogenetic Map13C1NCBI
Arsk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541816,956,754 - 16,989,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541816,959,736 - 16,989,293 (-)NCBIChiLan1.0ChiLan1.0
ARSK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1519,890,789 - 19,939,273 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl519,890,869 - 19,939,068 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0519,744,154 - 19,794,098 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ARSK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1313,993,008 - 14,027,527 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl313,992,857 - 14,027,527 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha315,332,099 - 15,366,407 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0313,873,423 - 13,907,704 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl313,871,832 - 13,907,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1313,836,197 - 13,870,480 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0313,833,711 - 13,867,956 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0314,033,163 - 14,067,468 (-)NCBIUU_Cfam_GSD_1.0
Arsk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213169,550,827 - 169,601,097 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365237,736,515 - 7,786,370 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARSK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2102,164,222 - 102,212,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12102,164,089 - 102,210,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2295,606,130 - 95,652,293 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARSK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1489,438,339 - 89,488,019 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl489,438,539 - 89,489,085 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604938,083,306 - 38,135,736 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arsk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474314,197,845 - 14,228,839 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474314,198,012 - 14,228,054 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH136711  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.225,575,973 - 5,576,099 (+)MAPPERmRatBN7.2
Rnor_6.022,835,815 - 2,835,940NCBIRnor6.0
Rnor_5.022,836,355 - 2,836,480UniSTSRnor5.0
RGSC_v3.423,125,419 - 3,125,544UniSTSRGSC3.4
Celera22,045,462 - 2,045,587UniSTS
Cytogenetic Map2q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:24
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000029250
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 9 3 1 1 14 18 16 9 1
Low 3 43 48 41 16 41 7 10 60 17 25 2 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029250   ⟹   ENSRNOP00000029855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl25,574,322 - 5,631,467 (-)Ensembl
Rnor_6.0 Ensembl22,834,355 - 2,891,253 (-)Ensembl
RefSeq Acc Id: NM_001047917   ⟹   NP_001041382
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,575,727 - 5,631,370 (-)NCBI
Rnor_6.022,835,568 - 2,891,059 (-)NCBI
Rnor_5.022,834,700 - 2,891,776 (-)NCBI
RGSC_v3.423,125,172 - 3,181,562 (-)RGD
Celera22,045,215 - 2,100,520 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001041382 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAI84991 (Get FASTA)   NCBI Sequence Viewer  
  EDM09916 (Get FASTA)   NCBI Sequence Viewer  
  Q32KJ2 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001041382   ⟸   NM_001047917
- Peptide Label: precursor
- UniProtKB: Q32KJ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029855   ⟸   ENSRNOT00000029250

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32KJ2-F1-model_v2 AlphaFold Q32KJ2 1-563 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691035
Promoter ID:EPDNEW_R1560
Type:initiation region
Name:Arsk_1
Description:arylsulfatase family, member K
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.022,891,168 - 2,891,228EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310182 AgrOrtholog
BioCyc Gene G2FUF-55083 BioCyc
Ensembl Genes ENSRNOG00000026937 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000029855 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029250 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.720.10 UniProtKB/Swiss-Prot
InterPro Alkaline_phosphatase_core_sf UniProtKB/Swiss-Prot
  Sulfatase_N UniProtKB/Swiss-Prot
KEGG Report rno:365619 UniProtKB/Swiss-Prot
NCBI Gene 365619 ENTREZGENE
Pfam Sulfatase UniProtKB/Swiss-Prot
PhenoGen Arsk PhenoGen
Superfamily-SCOP SSF53649 UniProtKB/Swiss-Prot
UniProt ARSK_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-25 Arsk  arylsulfatase family, member K  Arsk  arylsulfatase K  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Arsk  arylsulfatase K  RGD1310182  similar to RIKEN cDNA 2810429K17  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310182  similar to RIKEN cDNA 2810429K17  RGD1310182_predicted  similar to RIKEN cDNA 2810429K17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310182_predicted  similar to RIKEN cDNA 2810429K17 (predicted)  LOC365619_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC365619_predicted  similar to RIKEN cDNA 2810429K17 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL