Ndc80 (NDC80 kinetochore complex component) - Rat Genome Database

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Gene: Ndc80 (NDC80 kinetochore complex component) Rattus norvegicus
Analyze
Symbol: Ndc80
Name: NDC80 kinetochore complex component
RGD ID: 1310154
Description: Predicted to enable several functions, including cyclin binding activity; identical protein binding activity; and kinetochore adaptor activity. Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; microtubule cytoskeleton organization involved in mitosis; and positive regulation of mitotic cell cycle spindle assembly checkpoint. Predicted to act upstream of or within several processes, including centrosome duplication; meiosis I cell cycle process; and skeletal muscle satellite cell proliferation. Predicted to be located in several cellular components, including centrosome; kinetochore; and nuclear speck. Predicted to be part of Ndc80 complex. Orthologous to human NDC80 (NDC80 kinetochore complex component); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: kinetochore associated 2; kinetochore protein NDC80 homolog; Kntc2; LOC301701; NDC80 homolog, kinetochore complex component; NDC80 homolog, kinetochore complex component (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89118,853,806 - 118,887,582 (-)NCBIGRCr8
mRatBN7.29111,407,191 - 111,440,921 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9111,407,191 - 111,440,924 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9119,805,258 - 119,842,593 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09124,934,621 - 124,971,844 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09123,271,148 - 123,308,405 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09119,837,857 - 119,871,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,839,016 - 119,871,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09119,291,271 - 119,324,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,702,935 - 110,718,894 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19110,912,517 - 110,945,708 (-)NCBI
Celera9108,536,354 - 108,552,152 (-)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dibenz[a,h]anthracene  (ISO)
dicrotophos  (ISO)
dieldrin  (EXP)
dioxygen  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
flutamide  (EXP)
fluvastatin  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
glycidol  (EXP)
hydrogen peroxide  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
lucanthone  (ISO)
menadione  (ISO)
methamphetamine  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenanthrene  (ISO)
phenformin  (EXP)
phytoestrogen  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
senecionine  (EXP)
Senkirkine  (EXP)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
zaragozic acid A  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA,ISO)
chromosome  (IEA)
chromosome, centromeric region  (IEA)
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
kinetochore  (IEA,ISO)
Ndc80 complex  (IBA,IEA,ISO)
nuclear speck  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)
outer kinetochore  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Activation of CDCA1-KNTC2, members of centromere protein complex, involved in pulmonary carcinogenesis. Hayama S, etal., Cancer Res. 2006 Nov 1;66(21):10339-48. doi: 10.1158/0008-5472.CAN-06-2137.
4. siRNA-mediated knockdown against CDCA1 and KNTC2, both frequently overexpressed in colorectal and gastric cancers, suppresses cell proliferation and induces apoptosis. Kaneko N, etal., Biochem Biophys Res Commun. 2009 Dec 25;390(4):1235-40. doi: 10.1016/j.bbrc.2009.10.127. Epub 2009 Oct 28.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:14699129   PMID:17363900   PMID:18195732   PMID:19468067   PMID:19946888   PMID:20360068   PMID:22581055   PMID:23891108   PMID:24752407   PMID:25416956   PMID:25743205  


Genomics

Comparative Map Data
Ndc80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89118,853,806 - 118,887,582 (-)NCBIGRCr8
mRatBN7.29111,407,191 - 111,440,921 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9111,407,191 - 111,440,924 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9119,805,258 - 119,842,593 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09124,934,621 - 124,971,844 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09123,271,148 - 123,308,405 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09119,837,857 - 119,871,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,839,016 - 119,871,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09119,291,271 - 119,324,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,702,935 - 110,718,894 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19110,912,517 - 110,945,708 (-)NCBI
Celera9108,536,354 - 108,552,152 (-)NCBICelera
Cytogenetic Map9q38NCBI
NDC80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38182,571,557 - 2,616,635 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl182,571,557 - 2,616,635 (+)EnsemblGRCh38hg38GRCh38
GRCh37182,571,556 - 2,616,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36182,561,605 - 2,606,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 34182,561,604 - 2,606,626NCBI
Celera182,446,814 - 2,491,757 (+)NCBICelera
Cytogenetic Map18p11.32NCBI
HuRef182,532,999 - 2,577,942 (+)NCBIHuRef
CHM1_1182,570,883 - 2,615,800 (+)NCBICHM1_1
T2T-CHM13v2.0182,727,304 - 2,772,223 (+)NCBIT2T-CHM13v2.0
Ndc80
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,803,095 - 71,833,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,803,095 - 71,833,852 (-)EnsemblGRCm39 Ensembl
GRCm381771,496,100 - 71,526,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,496,100 - 71,526,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv371771,845,440 - 71,876,197 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361771,400,962 - 71,431,714 (-)NCBIMGSCv36mm8
Celera1775,767,449 - 75,800,160 (-)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1741.87NCBI
Ndc80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554027,691,937 - 7,729,690 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554027,692,009 - 7,728,876 (-)NCBIChiLan1.0ChiLan1.0
NDC80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21735,829,184 - 35,874,768 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11821,521,776 - 21,567,360 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01811,666,099 - 11,711,456 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11813,972,637 - 14,018,261 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1813,972,637 - 14,018,261 (-)Ensemblpanpan1.1panPan2
NDC80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1769,268,218 - 69,317,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl769,268,242 - 69,317,072 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha768,723,201 - 68,772,189 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0769,329,940 - 69,378,870 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl769,329,990 - 69,378,835 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1769,012,589 - 69,061,471 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0769,032,710 - 69,081,627 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0769,329,927 - 69,378,829 (+)NCBIUU_Cfam_GSD_1.0
Ndc80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494465,630,900 - 65,669,747 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366721,872,193 - 1,909,675 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366721,872,205 - 1,910,956 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDC80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6103,999,034 - 104,055,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16104,000,794 - 104,055,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2697,024,076 - 97,061,162 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDC80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11861,835,027 - 61,882,660 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1861,835,064 - 61,881,627 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605036,694,925 - 36,740,902 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndc80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477012,939,763 - 12,974,162 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477012,937,887 - 12,974,352 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndc80
284 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:69
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000018644
Prediction methods:Microtar, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000018644   ⟹   ENSRNOP00000018644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9119,840,326 - 119,871,382 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080498   ⟹   ENSRNOP00000072111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9111,407,191 - 111,440,924 (-)Ensembl
Rnor_6.0 Ensembl9119,839,016 - 119,869,639 (-)Ensembl
RefSeq Acc Id: NM_001126270   ⟹   NP_001119742
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89118,853,806 - 118,887,529 (-)NCBI
mRatBN7.29111,407,191 - 111,440,921 (-)NCBI
Rnor_6.09119,840,326 - 119,856,147 (-)NCBI
Rnor_5.09119,291,271 - 119,324,839 (-)NCBI
RGSC_v3.49110,702,935 - 110,718,894 (-)RGD
Celera9108,536,354 - 108,552,152 (-)RGD
Sequence:
RefSeq Acc Id: XM_008767423   ⟹   XP_008765645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89118,856,273 - 118,887,582 (-)NCBI
mRatBN7.29111,407,191 - 111,440,898 (-)NCBI
Rnor_6.09119,837,857 - 119,871,435 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083429   ⟹   XP_038939357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89118,856,273 - 118,887,528 (-)NCBI
mRatBN7.29111,407,191 - 111,440,761 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001119742 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765645 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939357 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61935 (Get FASTA)   NCBI Sequence Viewer  
  EDL90957 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072111
  ENSRNOP00000072111.2
RefSeq Acc Id: NP_001119742   ⟸   NM_001126270
- UniProtKB: B1WBY4 (UniProtKB/TrEMBL),   F7F189 (UniProtKB/TrEMBL),   A0A0G2K254 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765645   ⟸   XM_008767423
- Peptide Label: isoform X1
- UniProtKB: F7F189 (UniProtKB/TrEMBL),   B1WBY4 (UniProtKB/TrEMBL),   A0A0G2K254 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072111   ⟸   ENSRNOT00000080498
Ensembl Acc Id: ENSRNOP00000018644   ⟸   ENSRNOT00000018644
RefSeq Acc Id: XP_038939357   ⟸   XM_039083429
- Peptide Label: isoform X1
- UniProtKB: B1WBY4 (UniProtKB/TrEMBL),   F7F189 (UniProtKB/TrEMBL),   A0A0G2K254 (UniProtKB/TrEMBL)
Protein Domains
DUF5595   Kinetochore protein Ndc80 CH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7F189-F1-model_v2 AlphaFold F7F189 1-642 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696917
Promoter ID:EPDNEW_R7439
Type:initiation region
Name:Ndc80_1
Description:NDC80 kinetochore complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09119,871,421 - 119,871,481EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310154 AgrOrtholog
BioCyc Gene G2FUF-26325 BioCyc
Ensembl Genes ENSRNOG00000013727 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080498 ENTREZGENE
  ENSRNOT00000080498.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.30 UniProtKB/TrEMBL
  6.10.250.1950 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9022458 IMAGE-MGC_LOAD
InterPro DUF5595 UniProtKB/TrEMBL
  Kinetochore_Ndc80 UniProtKB/TrEMBL
  Ndc80_CH UniProtKB/TrEMBL
  Ndc80_sf UniProtKB/TrEMBL
KEGG Report rno:301701 UniProtKB/TrEMBL
MGC_CLONE MGC:187716 IMAGE-MGC_LOAD
NCBI Gene 301701 ENTREZGENE
PANTHER KINETOCHORE PROTEIN NDC80 HOMOLOG UniProtKB/TrEMBL
  PTHR10643 UniProtKB/TrEMBL
Pfam DUF5595 UniProtKB/TrEMBL
  Ndc80_HEC UniProtKB/TrEMBL
PhenoGen Ndc80 PhenoGen
RatGTEx ENSRNOG00000013727 RatGTEx
UniProt A0A0G2K254 ENTREZGENE, UniProtKB/TrEMBL
  A6KFA5_RAT UniProtKB/TrEMBL
  B1WBY4 ENTREZGENE
  F7F189 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B1WBY4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-27 Ndc80  NDC80 kinetochore complex component  Ndc80  NDC80 homolog, kinetochore complex component (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Ndc80  NDC80 homolog, kinetochore complex component (S. cerevisiae)  Kntc2_predicted  kinetochore associated 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED