Snx25 (sorting nexin 25) - Rat Genome Database

Name: Snx25
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Snx25 (sorting nexin 25) Rattus norvegicus

Analyze

Symbol:

Snx25

Name:

sorting nexin 25

RGD ID:

1310150

Description:

Predicted to have type I transforming growth factor beta receptor binding activity. Predicted to be involved in negative regulation of pathway-restricted SMAD protein phosphorylation; negative regulation of transforming growth factor beta receptor signaling pathway; and receptor catabolic process. Predicted to localize to endosome and intracellular membrane-bounded organelle. Orthologous to human SNX25 (sorting nexin 25); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

LOC306471; sorting nexin-25

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX25 (sorting nexin 25)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Snx25 (sorting nexin 25)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Snx25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SNX25 (sorting nexin 25)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Mus musculus (house mouse):	Snx25 (sorting nexin 25)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	MDM1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Drosophila melanogaster (fruit fly):	snz	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)

Allele / Splice:

Snx25^{Tn(sb-T2/Bart3)2.270Mcwi}

Genetic Models:

F344-Snx25^{Tn(sb-T2/Bart3)2.270Mcwi}

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	46,134,552 - 46,238,471 (+)	NCBI
Rnor_6.0 Ensembl	16	49,350,884 - 49,432,118 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	49,328,958 - 49,432,415 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	49,051,539 - 49,159,381 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	49,415,658 - 49,518,663 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	49,415,438 - 49,518,714 (+)	NCBI
Celera	16	44,133,781 - 44,236,984 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

dilated cardiomyopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

aflatoxin B2 (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

panobinostat (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

sulforaphane (ISO)

sulindac (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

topotecan (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

negative regulation of pathway-restricted SMAD protein phosphorylation (ISO)

negative regulation of transforming growth factor beta receptor signaling pathway (ISO)

protein transport (IEA)

receptor catabolic process (ISO)

Cellular Component

cellular_component (ND)

endosome (ISO)

intracellular membrane-bounded organelle (ISO)

Molecular Function

molecular_function (ND)

phosphatidylinositol binding (IEA)

type I transforming growth factor beta receptor binding (ISO)

References

References - curated


1.	RGD automated data pipeline
2.	RGD automated import pipeline for gene-chemical interactions
3.	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932	PMID:21266196

Genomics

Comparative Map Data

Snx25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	46,134,552 - 46,238,471 (+)	NCBI
Rnor_6.0 Ensembl	16	49,350,884 - 49,432,118 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	49,328,958 - 49,432,415 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	49,051,539 - 49,159,381 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	49,415,658 - 49,518,663 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	49,415,438 - 49,518,714 (+)	NCBI
Celera	16	44,133,781 - 44,236,984 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

SNX25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	185,204,237 - 185,370,185 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	185,204,237 - 185,368,020 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	186,125,391 - 186,285,120 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	186,368,278 - 186,522,114 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	186,506,432 - 186,660,267	NCBI
Celera	4	183,458,214 - 183,611,271 (+)	NCBI
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	181,885,306 - 182,038,630 (+)	NCBI		HuRef
CHM1_1	4	186,101,907 - 186,261,556 (+)	NCBI		CHM1_1

Snx25
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	46,486,298 - 46,605,535 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	46,486,298 - 46,605,196 (-)	Ensembl
GRCm38	8	46,033,261 - 46,152,441 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	46,033,261 - 46,152,159 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	47,118,615 - 47,209,500 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	47,532,089 - 47,615,519 (-)	NCBI			mm8
Celera	8	48,716,126 - 48,805,692 (-)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI

Snx25
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	23,676,002 - 23,787,308 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	23,678,301 - 23,787,256 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	189,631,239 - 189,746,590 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	189,631,239 - 189,746,590 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	177,377,302 - 177,529,601 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SNX25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	45,269,434 - 45,411,890 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	45,269,412 - 45,403,719 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	45,757,002 - 45,899,584 (-)	NCBI
ROS_Cfam_1.0	16	47,485,851 - 47,628,628 (-)	NCBI
UMICH_Zoey_3.1	16	45,454,112 - 45,588,797 (-)	NCBI
UNSW_CanFamBas_1.0	16	46,066,177 - 46,201,210 (-)	NCBI
UU_Cfam_GSD_1.0	16	46,197,403 - 46,340,369 (-)	NCBI

Snx25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_ltri_2	NW_024404943	34,020,358 - 34,127,227 (+)	NCBI
SpeTri2.0	NW_004936554	3,982,755 - 4,093,143 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	46,266,762 - 46,388,324 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	46,306,967 - 46,388,404 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	53,105,358 - 53,186,279 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX25
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	131,171,833 - 131,320,054 (+)	NCBI
ChlSab1.1 Ensembl	7	131,207,046 - 131,313,261 (+)	Ensembl

Snx25
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624769	16,058,827 - 16,220,716 (+)	NCBI

Position Markers

RH133940

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	16	49,432,076 - 49,432,272	NCBI	Rnor6.0
Rnor_5.0	16	49,159,058 - 49,159,254	UniSTS	Rnor5.0
RGSC_v3.4	16	49,518,324 - 49,518,520	UniSTS	RGSC3.4
Celera	16	44,236,645 - 44,236,841	UniSTS
RH 3.4 Map	16	456.3	UniSTS
Cytogenetic Map	16	q11	UniSTS

BI291965

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	16	49,432,551 - 49,432,695	NCBI	Rnor6.0
Rnor_5.0	16	49,159,533 - 49,159,677	UniSTS	Rnor5.0
RGSC_v3.4	16	49,518,799 - 49,518,943	UniSTS	RGSC3.4
Celera	16	44,237,120 - 44,237,264	UniSTS
RH 3.4 Map	16	457.2	UniSTS
Cytogenetic Map	16	q11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	1090054	86162972	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	1550187	63210301	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1550187	63210301	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	1550187	63210301	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	1550187	63210301	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	5013802	50013802	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	5013802	50169318	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	5013802	52144919	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	5013802	64012784	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	20755556	80316424	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	24846541	69846541	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	27519980	72519980	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	28340315	73340315	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	35307110	63909364	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	39000021	84000021	Rat
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	41512710	86512710	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	41512710	86512710	Rat
631833	Sach2	Saccharin preference QTL 2	4	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake rate (CMO:0001613)	16	45905097	53253355	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	46558188	90668790	Rat

Genetic Models

This gene Snx25 is modified in the following models/strains

F344-Snx25^{Tn(sb-T2/Bart3)2.270Mcwi}

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	71
Count of miRNA genes:	58
Interacting mature miRNAs:	69
Transcripts:	ENSRNOT00000014828
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		49	41	19	41	2	2	68	35	35	11	2
Low		43	8				6	9	6		6		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001061047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_224863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000014828 ⟹ ENSRNOP00000014828

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	49,350,884 - 49,432,118 (+)	Ensembl

RefSeq Acc Id:

XM_001061047 ⟹ XP_001061047

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	16	44,133,781 - 44,236,984 (+)	NCBI

Sequence:

show sequence

GCGCTGTGCTGCCTGGTCCCGGGCTGGGGACCGGCGGCGGGCACGGGGCCGGGCGCGGTACTGC
TGCGCCTCAGCCTGTACCTGAGCTGCGCCGCGGCCGCCTTGCTGCTGGGGACACTGGTCGCGCT
CGTCTGCTGGAGCCCGCGCGCCCAGCCGCCGGACTTCGCCTCTTCCTGGAGCCGGCTGGCGGCG
GCCGTCCGCTGTCCGCTGCGGAGCCCTGTGTATGGAAATCCACAGGAGACAGCTCAGGGCAGAA
GAGTGGTCATTTCTCACAATATGGATCGAGCTCTGAAAGACGTGTTCGACTACAGTTACAGAGA
CTACATTCTCTCCTGGTACGGCAACCTCAGCAGAGATGATGGGCAGCTCTACCATTTGCTCTTG
GATGACTTCTGGGATATTGCCAAGCAGATTCGCTACAGGCTGAGTCACGTGGATGTGGTTAAAG
TTGTCTGTAATGATATTGTAAAGGCTTTGCTCACTCACTTCTGTGACCTGAAAGCTGCTACTGC
CAGACATGAAGAACAGCCAAGGCCTTTTGTGTTGCATGCATGCTTGAAGGACTCACACGATGAA
GTAAGATTCCTTCAAACGTGTTCTCAGGTTCTGGTGTTTTGCCTTCTCCCTTCGAAGGATATCC
AGTCTCTCAGCTTACGTACAATGCTCGCAGAGATTCTCACAACAAAAGTCTTGAAGCCGGTGGT
GGAATTGCTGAGTAACCCTGATTACATTAACCAGATGCTTCTGGCGCAGTTGGAGTATAGGGAG
CAGATGAGTGGACATCACAAGAGAGCCTACACGTACGCTCCTTCTTACGAGGAGTTCATCAAGC
TCATCAACAGCAACTCTGACGTGGAGTTCCTGAAGCAGCTCAGGTATCAAATTGTAGTGGAAAT
AATCCAAGCAACTACAATTAGCAGCTTTCCCCAGCTGAAGAGGCACAAGGGTAAGGAATCTGCT
GCCATGAAAACTGATCTCTTGCGGGCCAGGAACATGAAAAGGTACATTAACCAGCTGACTGTGG
CAAAGAAGCAGTGTGAGAAGAGAATCCGAATCCTGGGAGGTCCTGCCTATGACCAGCAAGAGGA
CGGGGTCTCGGATGAAGGGGAAGGGCCTCAGAGCCAAAAGATTCTTCAGTTTGAAGATATTATG
ACCAATCCTTTCTACCGAGAGCGCTTTGGAACATACATGGAACGGATCGACAAGCGGGCTTTGG
TTGGCTTTTGGGAGTCTGTGGAACACCTGAAGAATGCTAACAAGAATGAAATTCCACAATTAGT
GAGTGAAATGTATCAGAATTTTTTTGTGGAAAGCAAGGAAATTCCTGTGGAAAAGTCACTTTAC
AAAGAAATCCAGCAGTGCCTCGTGGGAAACAAGGGTATCGAGGTGTTCAGCAAAATCCAAGGAG
ATGTGTACGATGTACTGAGGGATAGGTATTACCCCTCCTTCCTTGTCAGCGACCTGTATGAGAA
GCTCATACATGAGGAGGAGGAAGAGACACCTGACTCTCAGCTTGCCTCGGGGAAGGATGAACTG
GGTTCAGGAGGTGAGGCTGGTGAGGAGGTTGTAGAAGGCACCAGTGGGGTCAGTGATCCAGCCA
GCTTTGCTGTAATCAAACTTCGAGAGCTAAGTGAGAAACTTGAATATAAAAGGCAAGCTCTAAG
TTCTATTCAAAATGCACCAAAACCTGATAAGAAGATTATTTCCAAGCTGAAGGACGAAATACTT
GTGATAGAGAAAGAGTGCACAGATCTTCAGCTGCACATGGCGAGAACAGATTGGTGGTGTGAGC
ACCTGGGCCTGTGGAAAGCCTCCATCACCAGCGCAGAGGTGACAGAAGAGAATGGTGAGCAAAT
GCCTTGTTATTTTGTCAGGGTAAATCTACAAGAAGTTGGAGGAGTTGAAACTAAAAACTGGACT
GTACCAAGAAGGCTCAGTGAGTTTCAGAATTTACATCGGAAACTTAGTGAGTGTGTCCCTTCTT
TAAAAAAAGTCCAGTTGCCTTCTCTCAGTAAGCTGCCTTTCAAATCTATAGATCACAAGTTCCT
GGAAAAGTCAAAAAATCAGTTAAATAAGTTTTTACAGAACCTGCTTTCAGATGAAAGACTGTTT
CAGAGTGAAGCACTTTATGCCTTTTTGAGCCCTTCTCCTGACTACCTCAAGGTCATTGATGTGC
AGGGGAAAAAAACCTCCTTCTCATTATCTTCATTCTTGGAAAAACTTCCTCGTGATTTCTTCTC
CCATCAGGAGGAGGAGATAGAAGAGGACAGCGACCTGTCCGATTACGGGGACGATGTGGACGGG
AAGAAGGACGCCTTGGCTGAACCGTGTTTCATGCTCATCGGGGAGATTTTTGAACTTCGAGGAA
TGTTTAAATGGGTGCGAAGAACATTGATTGCTCTCGTTCAGGTCACATTTGGAAGAACCATCAA
CAAGCAAATCCGGGACACGGTGAACTGGATCTTCAGCGAGCAGATGGTGGTTTACTACATTAGT
GCTTTCCGAGATGCTTTCTGGCCAAATGGGAAACTGGCACCACCAACAAGAATCAGAAGCGAAG
CACAAAGTCAGGAAACAAAACAGAGAGCACAGCAAAAACTGCTTGAAAACATTCCAGATACACT
TCAGAGCCTTGTTGGACAGCAAAATGCCCGCCATGGTATAATAAAAATATTCAAGGCGCTGCAA
GAAACAAGGGCCAACAAGCACCTGTTATATGTGCTGATGGAGCTGCTGCTGACAGAGCTCTGTC
CTGAGCTGAGAGCTCACCTGGATCAGCTGAAAGCTGGTCAAGTCTAAGACTGCACAAAGCAACC
GCCAGAGAAATGTCTGTGTAAAAATAGACATTAAACATTTTCCTCTTTTCCACAGAGGGCCCGA
CAAGAACCATACTGATTTTTATTTTCATGCCTCCCTCTAGTTTTATGCCAAGTGAGCAGAATCA
GAGGGAGAGGACTGACGCTGTGGTAGGCAATAGAAAACAGACTTTAAAGCTCACCATGCTGACT
GAAATACAAATGTTAATATGTGATAAGAACATAGGAAATATTTTAAATATTTATGAAAACAGTT
TTGTTGTTAAATGACAAAGTCTGAATATTGTACAGTTAATCTCCTCACTGAGGATTCTGACCAT
TCCTGTGTCTCCCGTGTATTGAAGACCACTGTTGTGCAATGCTTGGTGTAAAGTTATTGTGAAA
ATTTTATTGTTTTTATTTTTACCAAAGATTTCCCATAGTTTGAAGCATTTGAAGCAATAAAATA
CAAAAAAAGAATCACAGTGCTCAAAAGTAA

hide sequence

RefSeq Acc Id:

XM_006222238 ⟹ XP_006222300

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	16	44,133,781 - 44,236,984 (+)	NCBI

Sequence:

show sequence

GCGCTGTGCTGCCTGGTCCCGGGCTGGGGACCGGCGGCGGGCACGGGGCCGGGCGCGGTACTGC
TGCGCCTCAGCCTGTACCTGAGCTGCGCCGCGGCCGCCTTGCTGCTGGGGACACTGGTCGCGCT
CGTCTGCTGGAGCCCGCGCGCCCAGCCGCCGGACTTCGCCTCTTCCTGGAGCCGGCTGGCGGCG
GCCGTCCGCTGTCCGCTGCGGAGCCCTGTGTATGGAAATCCACAGGAGACAGCTCAGGGCAGAA
GAGTGGTCATTTCTCACAATATGGATCGAGCTCTGAAAGACGTGTTCGACTACAGTTACAGAGA
CTACATTCTCTCCTGGTACGGCAACCTCAGCAGAGATGATGGGCAGCTCTACCATTTGCTCTTG
GATGACTTCTGGGATATTGCCAAGCAGATTCGCTACAGGCTGAGTCACGTGGATGTGGTTAAAG
TTGTCTGTAATGATATTGTAAAGGCTTTGCTCACTCACTTCTGTGACCTGAAAGCTGCTACTGC
CAGACATGAAGAACAGCCAAGGCCTTTTGTGTTGCATGCATGCTTGAAGGACTCACACGATGAA
GTAAGATTCCTTCAAACGTGTTCTCAGGTTCTGGTGTTTTGCCTTCTCCCTTCGAAGGATATCC
AGTCTCTCAGCTTACGTACAATGCTCGCAGAGATTCTCACAACAAAAGTCTTGAAGCCGGTGGT
GGAATTGCTGAGTAACCCTGATTACATTAACCAGATGCTTCTGGCGCAGTTGGAGTATAGGGAG
CAGATGAGTGGACATCACAAGAGAGCCTACACGTACGCTCCTTCTTACGAGGAGTTCATCAAGC
TCATCAACAGCAACTCTGACGTGGAGTTCCTGAAGCAGCTCAGGTATCAAATTGTAGTGGAAAT
AATCCAAGCAACTACAATTAGCAGCTTTCCCCAGCTGAAGAGGCACAAGGGTAAGGAATCTGCT
GCCATGAAAACTGATCTCTTGCGGGCCAGGAACATGAAAAGGTACATTAACCAGCTGACTGTGG
CAAAGAAGCAGTGTGAGAAGAGAATCCGAATCCTGGGAGGTCCTGCCTATGACCAGCAAGAGGA
CGGGGTCTCGGATGAAGGGGAAGGGCCTCAGAGCCAAAAGATTCTTCAGTTTGAAGATATTATG
ACCAATCCTTTCTACCGAGAGCGCTTTGGAACATACATGGAACGGATCGACAAGCGGGCTTTGG
TTGGCTTTTGGGAGTCTGTGGAACACCTGAAGAATGCTAACAAGAATGAAATTCCACAATTAGT
GAGTGAAATGTATCAGAATTTTTTTGTGGAAAGCAAGGAAATTCCTGTGGAAAAGTCACTTTAC
AAAGAAATCCAGCAGTGCCTCGTGGGAAACAAGGGTATCGAGGTGTTCAGCAAAATCCAAGGAG
ATGTGTACGATGTACTGAGGGATAGGTATTACCCCTCCTTCCTTGTCAGCGACCTGTATGAGAA
GCTCATACATGAGGAGGAGGAAGAGACACCTGACTCTCAGCTTGCCTCGGGGAAGGATGAACTG
ATTATTTCCAAGCTGAAGGACGAAATACTTGTGATAGAGAAAGAGTGCACAGATCTTCAGCTGC
ACATGGCGAGAACAGATTGGTGGTGTGAGCACCTGGGCCTGTGGAAAGCCTCCATCACCAGCGC
AGAGGTGACAGAAGAGAATGGTGAGCAAATGCCTTGTTATTTTGTCAGGGTAAATCTACAAGAA
GTTGGAGGAGTTGAAACTAAAAACTGGACTGTACCAAGAAGGCTCAGTGAGTTTCAGAATTTAC
ATCGGAAACTTAGTGAGTGTGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTCAGTAAGCT
GCCTTTCAAATCTATAGATCACAAGTTCCTGGAAAAGTCAAAAAATCAGTTAAATAAGTTTTTA
CAGAACCTGCTTTCAGATGAAAGACTGTTTCAGAGTGAAGCACTTTATGCCTTTTTGAGCCCTT
CTCCTGACTACCTCAAGGTCATTGATGTGCAGGGGAAAAAAACCTCCTTCTCATTATCTTCATT
CTTGGAAAAACTTCCTCGTGATTTCTTCTCCCATCAGGAGGAGGAGATAGAAGAGGACAGCGAC
CTGTCCGATTACGGGGACGATGTGGACGGGAAGAAGGACGCCTTGGCTGAACCGTGTTTCATGC
TCATCGGGGAGATTTTTGAACTTCGAGGAATGTTTAAATGGGTGCGAAGAACATTGATTGCTCT
CGTTCAGGTCACATTTGGAAGAACCATCAACAAGCAAATCCGGGACACGGTGAACTGGATCTTC
AGCGAGCAGATGGTGGTTTACTACATTAGTGCTTTCCGAGATGCTTTCTGGCCAAATGGGAAAC
TGGCACCACCAACAAGAATCAGAAGCGAAGCACAAAGTCAGGAAACAAAACAGAGAGCACAGCA
AAAACTGCTTGAAAACATTCCAGATACACTTCAGAGCCTTGTTGGACAGCAAAATGCCCGCCAT
GGTATAATAAAAATATTCAAGGCGCTGCAAGAAACAAGGGCCAACAAGCACCTGTTATATGTGC
TGATGGAGCTGCTGCTGACAGAGCTCTGTCCTGAGCTGAGAGCTCACCTGGATCAGCTGAAAGC
TGGTCAAGTCTAAGACTGCACAAAGCAACCGCCAGAGAAATGTCTGTGTAAAAATAGACATTAA
ACATTTTCCTCTTTTCCACAGAGGGCCCGACAAGAACCATACTGATTTTTATTTTCATGCCTCC
CTCTAGTTTTATGCCAAGTGAGCAGAATCAGAGGGAGAGGACTGACGCTGTGGTAGGCAATAGA
AAACAGACTTTAAAGCTCACCATGCTGACTGAAATACAAATGTTAATATGTGATAAGAACATAG
GAAATATTTTAAATATTTATGAAAACAGTTTTGTTGTTAAATGACAAAGTCTGAATATTGTACA
GTTAATCTCCTCACTGAGGATTCTGACCATTCCTGTGTCTCCCGTGTATTGAAGACCACTGTTG
TGCAATGCTTGGTGTAAAGTTATTGTGAAAATTTTATTGTTTTTATTTTTACCAAAGATTTCCC
ATAGTTTGAAGCATTTGAAGCAATAAAATACAAAAAAAGAATCACAGTGCTCAAAAGTAA

hide sequence

RefSeq Acc Id:

XM_006253168 ⟹ XP_006253230

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	46,134,552 - 46,238,452 (+)	NCBI
Rnor_6.0	16	49,328,958 - 49,432,415 (+)	NCBI
Rnor_5.0	16	49,051,539 - 49,159,381 (+)	NCBI

Sequence:

show sequence

GCGGCGGGCACGGGGCCGGGCGCGGTACTGCTGCGCCTCAGCCTGTACCTGAGCTGCGCCGCGG
CCGCCTTGCTGCTGGGGACACTGGTCGCGCTCGTCTGCTGGAGCCCGCGCGCCCAGCCGCCGGA
CTTCGCCTCTTCCTGGAGCCGGCTGGCGGCGGCCGTCCGCTGTCCGCTGCGGAGCCCTGTGTAT
GGAAATCCACAGGAGACAGCTCAGGGCAGAAGAGTGGTCATTTCTCACAATATGGATCGAGCTC
TGAAAGACGTGTTCGACTACAGTTACAGAGACTACATTCTCTCCTGGTACGGCAACCTCAGCAG
AGATGATGGGCAGCTCTACCATTTGCTCTTGGATGACTTCTGGGATATTGCCAAGCAGATTCGC
TACAGGCTGAGTCACGTGGATGTGGTTAAAGTTGTCTGTAATGATATTGTAAAGGCTTTGCTCA
CTCACTTCTGTGACCTGAAAGCTGCTACTGCCAGACATGAAGAACAGCCAAGGCCTTTTGTGTT
GCATGCATGCTTGAAGGACTCACACGATGAAGTAAGATTCCTTCAAACGTGTTCTCAGGTTCTG
GTGTTTTGCCTTCTCCCTTCGAAGGATATCCAGTCTCTCAGCTTACGTACAATGCTCGCAGAGA
TTCTCACAACAAAAGTCTTGAAGCCGGTGGTGGAATTGCTGAGTAACCCTGATTACATTAACCA
GATGCTTCTGGCGCAGTTGGAGTATAGGGAGCAGATGAGTGGACATCACAAGAGAGCCTACACG
TACGCTCCTTCTTACGAGGAGTTCATCAAGCTCATCAACAGCAACTCTGACGTGGAGTTCCTGA
AGCAGCTCAGGTATCAAATTGTAGTGGAAATAATCCAAGCAACTACAATTAGCAGCTTTCCCCA
GCTGAAGAGGCACAAGGGTAAGGAATCTGCTGCCATGAAAACTGATCTCTTGCGGGCCAGGAAC
ATGAAAAGGTACATTAACCAGCTGACTGTGGCAAAGAAGCAGTGTGAGAAGAGAATCCGAATCC
TGGGAGGTCCTGCCTATGACCAGCAAGAGGACGGGGTCTCGGATGAAGGGGAAGGGCCTCAGAG
CCAAAAGATTCTTCAGTTTGAAGATATTATGACCAATCCTTTCTACCGAGAGCGCTTTGGAACA
TACATGGAACGGATCGACAAGCGGGCTTTGGTTGGCTTTTGGGAGTCTGTGGAACACCTGAAGA
ATGCTAACAAGAATGAAATTCCACAATTAGTGAGTGAAATGTATCAGAATTTTTTTGTGGAAAG
CAAGGAAATTCCTGTGGAAAAGTCACTTTACAAAGAAATCCAGCAGTGCCTCGTGGGAAACAAG
GGTATCGAGGTGTTCAGCAAAATCCAAGGAGATGTGTACGATGTACTGAGGGATAGGTATTACC
CCTCCTTCCTTGTCAGCGACCTGTATGAGAAGCTCATACATGAGGAGGAGGAAGAGACACCTGA
CTCTCAGCTTGCCTCGGGGAAGGATGAACTGATTATTTCCAAGCTGAAGGACGAAATACTTGTG
ATAGAGAAAGAGTGCACAGATCTTCAGCTGCACATGGCGAGAACAGATTGGTGGTGTGAGCACC
TGGGCCTGTGGAAAGCCTCCATCACCAGCGCAGAGGTGACAGAAGAGAATGGTGAGCAAATGCC
TTGTTATTTTGTCAGGGTAAATCTACAAGAAGTTGGAGGAGTTGAAACTAAAAACTGGACTGTA
CCAAGAAGGCTCAGTGAGTTTCAGAATTTACATCGGAAACTTAGTGAGTGTGTCCCTTCTTTAA
AAAAAGTCCAGTTGCCTTCTCTCAGTAAGCTGCCTTTCAAATCTATAGATCACAAGTTCCTGGA
AAAGTCAAAAAATCAGTTAAATAAGTTTTTACAGAACCTGCTTTCAGATGAAAGACTGTTTCAG
AGTGAAGCACTTTATGCCTTTTTGAGCCCTTCTCCTGACTACCTCAAGGTCATTGATGTGCAGG
GGAAAAAAACCTCCTTCTCATTATCTTCATTCTTGGAAAAACTTCCTCGTGATTTCTTCTCCCA
TCAGGAGGAGGAGATAGAAGAGGACAGCGACCTGTCCGATTACGGGGACGATGTGGACGGGAAG
AAGGACGCCTTGGCTGAACCGTGTTTCATGCTCATCGGGGAGATTTTTGAACTTCGAGGAATGT
TTAAATGGGTGCGAAGAACATTGATTGCTCTCGTTCAGGTCACATTTGGAAGAACCATCAACAA
GCAAATCCGGGACACGGTGAACTGGATCTTCAGCGAGCAGATGGTGGTTTACTACATTAGTGCT
TTCCGAGATGCTTTCTGGCCAAATGGGAAACTGGCACCACCAACAAGAATCAGAAGCGAAGCAC
AAAGTCAGGAAACAAAACAGAGAGCACAGCAAAAACTGCTTGAAAACATTCCAGATACACTTCA
GAGCCTTGTTGGACAGCAAAATGCCCGCCATGGTATAATAAAAATATTCAAGGCGCTGCAAGAA
ACAAGGGCCAACAAGCACCTGTTATATGTGCTGATGGAGCTGCTGCTGACAGAGCTCTGTCCTG
AGCTGAGAGCTCACCTGGATCAGCTGAAAGCTGGTCAAGTCTAAGACTGCACAAAGCAACCGCC
AGAGAAATGTCTGTGTAAAAATAGACATTAAACATTTTCCTCTTTTCCACAGAGGGCCCGACAA
GAACCATACTGATTTTTATTTTCATGCCTCCCTCTAGTTTTATGCCAAGTGAGCAGAATCAGAG
GGAGAGGACTGACGCTGTGGTAGGCAATAGAAAACAGACTTTAAAGCTCACCATGCTGACTGAA
ATACAAATGTTAATATGTGATAAGAACATAGGAAATATTTTAAATATTTATGAAAACAGTTTTG
TTGTTAAATGACAAAGTCTGAATATTGTACAGTTAATCTCCTCACTGAGGATTCTGACCATTCC
TGTGTCTCCCGTGTATTGAAGACCACTGTTGTGCAATGCTTGGTGTAAAGTTATTGTGAAAATT
TTATTGTTTTTATTTTTACCAAAGATTTCCCATAGTTTGAAGCATTTGAAGCAATAAAATACAA
AAAAAGAATCACAGTGCTCAAAAGTAA

hide sequence

RefSeq Acc Id:

XM_039094893 ⟹ XP_038950821

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	46,175,425 - 46,238,471 (+)	NCBI

RefSeq Acc Id:

XM_224863 ⟹ XP_224863

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	46,134,552 - 46,238,452 (+)	NCBI
Rnor_6.0	16	49,328,959 - 49,432,415 (+)	NCBI
Rnor_5.0	16	49,051,539 - 49,159,381 (+)	NCBI
RGSC_v3.4	16	49,415,658 - 49,518,663 (+)	RGD

Sequence:

show sequence

CGGCGGGCACGGGGCCGGGCGCGGTACTGCTGCGCCTCAGCCTGTACCTGAGCTGCGCCGCGGC
CGCCTTGCTGCTGGGGACACTGGTCGCGCTCGTCTGCTGGAGCCCGCGCGCCCAGCCGCCGGAC
TTCGCCTCTTCCTGGAGCCGGCTGGCGGCGGCCGTCCGCTGTCCGCTGCGGAGCCCTGTGTATG
GAAATCCACAGGAGACAGCTCAGGGCAGAAGAGTGGTCATTTCTCACAATATGGATCGAGCTCT
GAAAGACGTGTTCGACTACAGTTACAGAGACTACATTCTCTCCTGGTACGGCAACCTCAGCAGA
GATGATGGGCAGCTCTACCATTTGCTCTTGGATGACTTCTGGGATATTGCCAAGCAGATTCGCT
ACAGGCTGAGTCACGTGGATGTGGTTAAAGTTGTCTGTAATGATATTGTAAAGGCTTTGCTCAC
TCACTTCTGTGACCTGAAAGCTGCTACTGCCAGACATGAAGAACAGCCAAGGCCTTTTGTGTTG
CATGCATGCTTGAAGGACTCACACGATGAAGTAAGATTCCTTCAAACGTGTTCTCAGGTTCTGG
TGTTTTGCCTTCTCCCTTCGAAGGATATCCAGTCTCTCAGCTTACGTACAATGCTCGCAGAGAT
TCTCACAACAAAAGTCTTGAAGCCGGTGGTGGAATTGCTGAGTAACCCTGATTACATTAACCAG
ATGCTTCTGGCGCAGTTGGAGTATAGGGAGCAGATGAGTGGACATCACAAGAGAGCCTACACGT
ACGCTCCTTCTTACGAGGAGTTCATCAAGCTCATCAACAGCAACTCTGACGTGGAGTTCCTGAA
GCAGCTCAGGTATCAAATTGTAGTGGAAATAATCCAAGCAACTACAATTAGCAGCTTTCCCCAG
CTGAAGAGGCACAAGGGTAAGGAATCTGCTGCCATGAAAACTGATCTCTTGCGGGCCAGGAACA
TGAAAAGGTACATTAACCAGCTGACTGTGGCAAAGAAGCAGTGTGAGAAGAGAATCCGAATCCT
GGGAGGTCCTGCCTATGACCAGCAAGAGGACGGGGTCTCGGATGAAGGGGAAGGGCCTCAGAGC
CAAAAGATTCTTCAGTTTGAAGATATTATGACCAATCCTTTCTACCGAGAGCGCTTTGGAACAT
ACATGGAACGGATCGACAAGCGGGCTTTGGTTGGCTTTTGGGAGTCTGTGGAACACCTGAAGAA
TGCTAACAAGAATGAAATTCCACAATTAGTGAGTGAAATGTATCAGAATTTTTTTGTGGAAAGC
AAGGAAATTCCTGTGGAAAAGTCACTTTACAAAGAAATCCAGCAGTGCCTCGTGGGAAACAAGG
GTATCGAGGTGTTCAGCAAAATCCAAGGAGATGTGTACGATGTACTGAGGGATAGGTATTACCC
CTCCTTCCTTGTCAGCGACCTGTATGAGAAGCTCATACATGAGGAGGAGGAAGAGACACCTGAC
TCTCAGCTTGCCTCGGGGAAGGATGAACTGGGTTCAGGAGGTGAGGCTGGTGAGGAGGTTGTAG
AAGGCACCAGTGGGGTCAGTGATCCAGCCAGCTTTGCTGTAATCAAACTTCGAGAGCTAAGTGA
GAAACTTGAATATAAAAGGCAAGCTCTAAGTTCTATTCAAAATGCACCAAAACCTGATAAGAAG
ATTATTTCCAAGCTGAAGGACGAAATACTTGTGATAGAGAAAGAGTGCACAGATCTTCAGCTGC
ACATGGCGAGAACAGATTGGTGGTGTGAGCACCTGGGCCTGTGGAAAGCCTCCATCACCAGCGC
AGAGGTGACAGAAGAGAATGGTGAGCAAATGCCTTGTTATTTTGTCAGGGTAAATCTACAAGAA
GTTGGAGGAGTTGAAACTAAAAACTGGACTGTACCAAGAAGGCTCAGTGAGTTTCAGAATTTAC
ATCGGAAACTTAGTGAGTGTGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTCAGTAAGCT
GCCTTTCAAATCTATAGATCACAAGTTCCTGGAAAAGTCAAAAAATCAGTTAAATAAGTTTTTA
CAGAACCTGCTTTCAGATGAAAGACTGTTTCAGAGTGAAGCACTTTATGCCTTTTTGAGCCCTT
CTCCTGACTACCTCAAGGTCATTGATGTGCAGGGGAAAAAAACCTCCTTCTCATTATCTTCATT
CTTGGAAAAACTTCCTCGTGATTTCTTCTCCCATCAGGAGGAGGAGATAGAAGAGGACAGCGAC
CTGTCCGATTACGGGGACGATGTGGACGGGAAGAAGGACGCCTTGGCTGAACCGTGTTTCATGC
TCATCGGGGAGATTTTTGAACTTCGAGGAATGTTTAAATGGGTGCGAAGAACATTGATTGCTCT
CGTTCAGGTCACATTTGGAAGAACCATCAACAAGCAAATCCGGGACACGGTGAACTGGATCTTC
AGCGAGCAGATGGTGGTTTACTACATTAGTGCTTTCCGAGATGCTTTCTGGCCAAATGGGAAAC
TGGCACCACCAACAAGAATCAGAAGCGAAGCACAAAGTCAGGAAACAAAACAGAGAGCACAGCA
AAAACTGCTTGAAAACATTCCAGATACACTTCAGAGCCTTGTTGGACAGCAAAATGCCCGCCAT
GGTATAATAAAAATATTCAAGGCGCTGCAAGAAACAAGGGCCAACAAGCACCTGTTATATGTGC
TGATGGAGCTGCTGCTGACAGAGCTCTGTCCTGAGCTGAGAGCTCACCTGGATCAGCTGAAAGC
TGGTCAAGTCTAAGACTGCACAAAGCAACCGCCAGAGAAATGTCTGTGTAAAAATAGACATTAA
ACATTTTCCTCTTTTCCACAGAGGGCCCGACAAGAACCATACTGATTTTTATTTTCATGCCTCC
CTCTAGTTTTATGCCAAGTGAGCAGAATCAGAGGGAGAGGACTGACGCTGTGGTAGGCAATAGA
AAACAGACTTTAAAGCTCACCATGCTGACTGAAATACAAATGTTAATATGTGATAAGAACATAG
GAAATATTTTAAATATTTATGAAAACAGTTTTGTTGTTAAATGACAAAGTCTGAATATTGTACA
GTTAATCTCCTCACTGAGGATTCTGACCATTCCTGTGTCTCCCGTGTATTGAAGACCACTGTTG
TGCAATGCTTGGTGTAAAGTTATTGTGAAAATTTTATTGTTTTTATTTTTACCAAAGATTTCCC
ATAGTTTGAAGCATTTGAAGCAATAAAATACAAAAAAAGAATCACAGTGCTCAAAAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_006253230	(Get FASTA)	NCBI Sequence Viewer
	XP_038950821	(Get FASTA)	NCBI Sequence Viewer
	XP_224863	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86510	(Get FASTA)	NCBI Sequence Viewer
	EDL78878	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_001061047 ⟸ XM_001061047

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDRALKDVFDYSYRDYILSWYGNLSRDDGQLYHLLLDDFWDIAKQIRYRLSHVDVVKVVCNDIV
KALLTHFCDLKAATARHEEQPRPFVLHACLKDSHDEVRFLQTCSQVLVFCLLPSKDIQSLSLRT
MLAEILTTKVLKPVVELLSNPDYINQMLLAQLEYREQMSGHHKRAYTYAPSYEEFIKLINSNSD
VEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKESAAMKTDLLRARNMKRYINQLTVAKKQCEK
RIRILGGPAYDQQEDGVSDEGEGPQSQKILQFEDIMTNPFYRERFGTYMERIDKRALVGFWESV
EHLKNANKNEIPQLVSEMYQNFFVESKEIPVEKSLYKEIQQCLVGNKGIEVFSKIQGDVYDVLR
DRYYPSFLVSDLYEKLIHEEEEETPDSQLASGKDELGSGGEAGEEVVEGTSGVSDPASFAVIKL
RELSEKLEYKRQALSSIQNAPKPDKKIISKLKDEILVIEKECTDLQLHMARTDWWCEHLGLWKA
SITSAEVTEENGEQMPCYFVRVNLQEVGGVETKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLP
SLSKLPFKSIDHKFLEKSKNQLNKFLQNLLSDERLFQSEALYAFLSPSPDYLKVIDVQGKKTSF
SLSSFLEKLPRDFFSHQEEEIEEDSDLSDYGDDVDGKKDALAEPCFMLIGEIFELRGMFKWVRR
TLIALVQVTFGRTINKQIRDTVNWIFSEQMVVYYISAFRDAFWPNGKLAPPTRIRSEAQSQETK
QRAQQKLLENIPDTLQSLVGQQNARHGIIKIFKALQETRANKHLLYVLMELLLTELCPELRAHL
DQLKAGQV

hide sequence

RefSeq Acc Id:

XP_224863 ⟸ XM_224863

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDRALKDVFDYSYRDYILSWYGNLSRDDGQLYHLLLDDFWDIAKQIRYRLSHVDVVKVVCNDIV
KALLTHFCDLKAATARHEEQPRPFVLHACLKDSHDEVRFLQTCSQVLVFCLLPSKDIQSLSLRT
MLAEILTTKVLKPVVELLSNPDYINQMLLAQLEYREQMSGHHKRAYTYAPSYEEFIKLINSNSD
VEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKESAAMKTDLLRARNMKRYINQLTVAKKQCEK
RIRILGGPAYDQQEDGVSDEGEGPQSQKILQFEDIMTNPFYRERFGTYMERIDKRALVGFWESV
EHLKNANKNEIPQLVSEMYQNFFVESKEIPVEKSLYKEIQQCLVGNKGIEVFSKIQGDVYDVLR
DRYYPSFLVSDLYEKLIHEEEEETPDSQLASGKDELGSGGEAGEEVVEGTSGVSDPASFAVIKL
RELSEKLEYKRQALSSIQNAPKPDKKIISKLKDEILVIEKECTDLQLHMARTDWWCEHLGLWKA
SITSAEVTEENGEQMPCYFVRVNLQEVGGVETKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLP
SLSKLPFKSIDHKFLEKSKNQLNKFLQNLLSDERLFQSEALYAFLSPSPDYLKVIDVQGKKTSF
SLSSFLEKLPRDFFSHQEEEIEEDSDLSDYGDDVDGKKDALAEPCFMLIGEIFELRGMFKWVRR
TLIALVQVTFGRTINKQIRDTVNWIFSEQMVVYYISAFRDAFWPNGKLAPPTRIRSEAQSQETK
QRAQQKLLENIPDTLQSLVGQQNARHGIIKIFKALQETRANKHLLYVLMELLLTELCPELRAHL
DQLKAGQV

hide sequence

RefSeq Acc Id:

XP_006222300 ⟸ XM_006222238

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDRALKDVFDYSYRDYILSWYGNLSRDDGQLYHLLLDDFWDIAKQIRYRLSHVDVVKVVCNDIV
KALLTHFCDLKAATARHEEQPRPFVLHACLKDSHDEVRFLQTCSQVLVFCLLPSKDIQSLSLRT
MLAEILTTKVLKPVVELLSNPDYINQMLLAQLEYREQMSGHHKRAYTYAPSYEEFIKLINSNSD
VEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKESAAMKTDLLRARNMKRYINQLTVAKKQCEK
RIRILGGPAYDQQEDGVSDEGEGPQSQKILQFEDIMTNPFYRERFGTYMERIDKRALVGFWESV
EHLKNANKNEIPQLVSEMYQNFFVESKEIPVEKSLYKEIQQCLVGNKGIEVFSKIQGDVYDVLR
DRYYPSFLVSDLYEKLIHEEEEETPDSQLASGKDELIISKLKDEILVIEKECTDLQLHMARTDW
WCEHLGLWKASITSAEVTEENGEQMPCYFVRVNLQEVGGVETKNWTVPRRLSEFQNLHRKLSEC
VPSLKKVQLPSLSKLPFKSIDHKFLEKSKNQLNKFLQNLLSDERLFQSEALYAFLSPSPDYLKV
IDVQGKKTSFSLSSFLEKLPRDFFSHQEEEIEEDSDLSDYGDDVDGKKDALAEPCFMLIGEIFE
LRGMFKWVRRTLIALVQVTFGRTINKQIRDTVNWIFSEQMVVYYISAFRDAFWPNGKLAPPTRI
RSEAQSQETKQRAQQKLLENIPDTLQSLVGQQNARHGIIKIFKALQETRANKHLLYVLMELLLT
ELCPELRAHLDQLKAGQV

hide sequence

RefSeq Acc Id:

XP_006253230 ⟸ XM_006253168

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDRALKDVFDYSYRDYILSWYGNLSRDDGQLYHLLLDDFWDIAKQIRYRLSHVDVVKVVCNDIV
KALLTHFCDLKAATARHEEQPRPFVLHACLKDSHDEVRFLQTCSQVLVFCLLPSKDIQSLSLRT
MLAEILTTKVLKPVVELLSNPDYINQMLLAQLEYREQMSGHHKRAYTYAPSYEEFIKLINSNSD
VEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKESAAMKTDLLRARNMKRYINQLTVAKKQCEK
RIRILGGPAYDQQEDGVSDEGEGPQSQKILQFEDIMTNPFYRERFGTYMERIDKRALVGFWESV
EHLKNANKNEIPQLVSEMYQNFFVESKEIPVEKSLYKEIQQCLVGNKGIEVFSKIQGDVYDVLR
DRYYPSFLVSDLYEKLIHEEEEETPDSQLASGKDELIISKLKDEILVIEKECTDLQLHMARTDW
WCEHLGLWKASITSAEVTEENGEQMPCYFVRVNLQEVGGVETKNWTVPRRLSEFQNLHRKLSEC
VPSLKKVQLPSLSKLPFKSIDHKFLEKSKNQLNKFLQNLLSDERLFQSEALYAFLSPSPDYLKV
IDVQGKKTSFSLSSFLEKLPRDFFSHQEEEIEEDSDLSDYGDDVDGKKDALAEPCFMLIGEIFE
LRGMFKWVRRTLIALVQVTFGRTINKQIRDTVNWIFSEQMVVYYISAFRDAFWPNGKLAPPTRI
RSEAQSQETKQRAQQKLLENIPDTLQSLVGQQNARHGIIKIFKALQETRANKHLLYVLMELLLT
ELCPELRAHLDQLKAGQV

hide sequence

RefSeq Acc Id:

ENSRNOP00000014828 ⟸ ENSRNOT00000014828

RefSeq Acc Id:	XP_038950821 ⟸ XM_039094893
- Peptide Label:	isoform X3

Protein Domains

PX PXA RGS

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310150	AgrOrtholog
Ensembl Genes	ENSRNOG00000011116	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000014828	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014828	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7132845	IMAGE-MGC_LOAD
InterPro	Phox	UniProtKB/TrEMBL
	Phox_assoc	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	Regulat_G_prot_signal_superfam	UniProtKB/TrEMBL
	RGS_sf	UniProtKB/TrEMBL
	SNX25	UniProtKB/TrEMBL
	SNX25_PX	UniProtKB/TrEMBL
	Sorting_nexin_C	UniProtKB/TrEMBL
KEGG Report	rno:306471	UniProtKB/TrEMBL
MGC_CLONE	MGC:105891	IMAGE-MGC_LOAD
NCBI Gene	306471	ENTREZGENE
PANTHER	PTHR22775:SF29	UniProtKB/TrEMBL
Pfam	Nexin_C	UniProtKB/TrEMBL
	PF00787	UniProtKB/TrEMBL
	PXA	UniProtKB/TrEMBL
	RGS	UniProtKB/TrEMBL
PhenoGen	Snx25	PhenoGen
PROSITE	PS50195	UniProtKB/TrEMBL
	PXA	UniProtKB/TrEMBL
	RGS	UniProtKB/TrEMBL
SMART	PXA	UniProtKB/TrEMBL
	RGS	UniProtKB/TrEMBL
	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	64268	UniProtKB/TrEMBL
	Regulat_G_prot_signal_superfam	UniProtKB/TrEMBL
Transposagen	Snx25	Transposagen
UniProt	F1M998_RAT	UniProtKB/TrEMBL
	Q5RJT4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Snx25	sorting nexin 25	Snx25_predicted	sorting nexin 25 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Snx25_predicted	sorting nexin 25 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar