Kif16b (kinesin family member 16B) - Rat Genome Database

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Gene: Kif16b (kinesin family member 16B) Rattus norvegicus
Analyze
Symbol: Kif16b
Name: kinesin family member 16B
RGD ID: 1310146
Description: Predicted to enable several functions, including ATP hydrolysis activity; phosphatidylinositol phosphate binding activity; and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in several processes, including Golgi to endosome transport; early endosome to late endosome transport; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within cellular response to type II interferon. Predicted to be located in early endosome; phagocytic vesicle; and spindle. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Orthologous to human KIF16B (kinesin family member 16B); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: kinesin-like protein KIF16B; LOC311478
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Kif16bTn(sb-T2/Bart3)2.200Mcwi  
Genetic Models: F344-Kif16bTn(sb-T2/Bart3)2.200Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83150,428,233 - 150,707,755 (-)NCBIGRCr8
mRatBN7.23129,974,692 - 130,254,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3129,974,800 - 130,254,019 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3133,858,582 - 134,149,362 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03142,442,587 - 142,733,395 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03140,145,790 - 140,436,578 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03136,596,621 - 136,936,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3136,657,480 - 136,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03143,103,727 - 143,381,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43130,967,515 - 131,250,402 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13130,874,500 - 131,130,642 (-)NCBI
Celera3128,908,978 - 129,180,308 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15882625   PMID:17641687   PMID:19144319   PMID:21238925  


Genomics

Comparative Map Data
Kif16b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83150,428,233 - 150,707,755 (-)NCBIGRCr8
mRatBN7.23129,974,692 - 130,254,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3129,974,800 - 130,254,019 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3133,858,582 - 134,149,362 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03142,442,587 - 142,733,395 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03140,145,790 - 140,436,578 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03136,596,621 - 136,936,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3136,657,480 - 136,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03143,103,727 - 143,381,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43130,967,515 - 131,250,402 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13130,874,500 - 131,130,642 (-)NCBI
Celera3128,908,978 - 129,180,308 (-)NCBICelera
Cytogenetic Map3q41NCBI
KIF16B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382016,272,104 - 16,573,448 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2016,272,104 - 16,573,448 (-)EnsemblGRCh38hg38GRCh38
GRCh372016,252,749 - 16,554,093 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362016,200,749 - 16,502,078 (-)NCBINCBI36Build 36hg18NCBI36
Celera2016,327,872 - 16,629,179 (-)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2016,214,467 - 16,516,712 (-)NCBIHuRef
CHM1_12016,252,472 - 16,554,080 (-)NCBICHM1_1
T2T-CHM13v2.02016,322,635 - 16,624,561 (-)NCBIT2T-CHM13v2.0
Kif16b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392142,459,399 - 142,743,535 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2142,459,394 - 142,743,451 (-)EnsemblGRCm39 Ensembl
GRCm382142,618,340 - 142,901,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2142,617,474 - 142,901,531 (-)EnsemblGRCm38mm10GRCm38
MGSCv372142,444,081 - 142,727,200 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362142,309,786 - 142,592,905 (-)NCBIMGSCv36mm8
Celera2143,799,300 - 144,080,607 (-)NCBICelera
Cytogenetic Map2G1NCBI
cM Map270.67NCBI
Kif16b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541525,447,539 - 25,740,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541525,449,734 - 25,740,697 (-)NCBIChiLan1.0ChiLan1.0
KIF16B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,158,926 - 17,461,659 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12017,155,768 - 17,458,469 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02016,229,429 - 16,532,735 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12016,210,821 - 16,512,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2016,210,821 - 16,512,618 (-)Ensemblpanpan1.1panPan2
KIF16B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1246,260,558 - 6,576,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl246,261,553 - 6,575,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha246,126,588 - 6,442,971 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0246,666,622 - 6,989,878 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1246,276,871 - 6,576,736 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0246,372,345 - 6,688,664 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0246,648,582 - 6,963,507 (+)NCBIUU_Cfam_GSD_1.0
Kif16b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640155,012,499 - 155,294,440 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364853,443,878 - 3,726,174 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364853,443,878 - 3,728,613 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF16B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1724,882,142 - 25,186,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11724,882,139 - 25,188,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21728,210,127 - 28,417,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF16B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1245,189,908 - 45,495,837 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl245,189,756 - 45,495,725 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660545,562,674 - 5,874,409 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif16b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474117,424,335 - 17,750,531 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kif16b
1346 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:207
Count of miRNA genes:145
Interacting mature miRNAs:179
Transcripts:ENSRNOT00000036273
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)3115638168135181505Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat

Markers in Region
D3Mit4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23130,193,298 - 130,193,489 (+)MAPPERmRatBN7.2
Rnor_6.03136,876,155 - 136,876,345NCBIRnor6.0
Rnor_5.03143,321,230 - 143,321,420UniSTSRnor5.0
RGSC_v3.43131,188,558 - 131,188,749RGDRGSC3.4
RGSC_v3.43131,188,559 - 131,188,749UniSTSRGSC3.4
RGSC_v3.13131,094,132 - 131,094,322RGD
RH 3.4 Map31161.8UniSTS
RH 3.4 Map31161.8RGD
RH 2.0 Map3777.9RGD
Cytogenetic Map3q41UniSTS
BM388214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23129,974,760 - 129,974,920 (+)MAPPERmRatBN7.2
Rnor_6.03136,657,775 - 136,657,934NCBIRnor6.0
Rnor_5.03143,103,690 - 143,103,849UniSTSRnor5.0
RGSC_v3.43130,967,476 - 130,967,635UniSTSRGSC3.4
Celera3128,908,939 - 128,909,098UniSTS
RH 3.4 Map31153.2UniSTS
Cytogenetic Map3q41UniSTS
RH126836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23129,975,215 - 129,975,415 (+)MAPPERmRatBN7.2
Rnor_6.03136,658,230 - 136,658,429NCBIRnor6.0
Rnor_5.03143,104,145 - 143,104,344UniSTSRnor5.0
RGSC_v3.43130,967,931 - 130,968,130UniSTSRGSC3.4
Celera3128,909,394 - 128,909,593UniSTS
Cytogenetic Map3q41UniSTS
RH130395  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23130,045,306 - 130,045,503 (+)MAPPERmRatBN7.2
Rnor_6.03136,728,081 - 136,728,277NCBIRnor6.0
Rnor_5.03143,173,457 - 143,173,653UniSTSRnor5.0
RGSC_v3.43131,040,134 - 131,040,330UniSTSRGSC3.4
Celera3128,980,562 - 128,980,758UniSTS
RH 3.4 Map31166.3UniSTS
Cytogenetic Map3q41UniSTS


Genetic Models
This gene Kif16b is modified in the following models/strains:


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 26 10 16 10 3 3 2 35 31 11 3
Low 2 43 31 31 3 31 5 8 72 10 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000036273   ⟹   ENSRNOP00000031372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3129,974,800 - 130,254,019 (-)Ensembl
Rnor_6.0 Ensembl3136,657,814 - 136,936,650 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083061   ⟹   ENSRNOP00000073957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3129,974,800 - 130,254,019 (-)Ensembl
Rnor_6.0 Ensembl3136,657,480 - 136,936,674 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118037   ⟹   ENSRNOP00000082939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3130,045,266 - 130,254,019 (-)Ensembl
RefSeq Acc Id: NM_001107783   ⟹   NP_001101253
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,428,352 - 150,707,585 (-)NCBI
mRatBN7.23129,974,800 - 130,254,019 (-)NCBI
Rnor_6.03136,657,814 - 136,936,650 (-)NCBI
Rnor_5.03143,103,727 - 143,381,598 (-)NCBI
RGSC_v3.43130,967,515 - 131,250,402 (-)RGD
Celera3128,908,978 - 129,180,308 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235108   ⟹   XP_006235170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,754 (-)NCBI
mRatBN7.23130,045,152 - 130,254,193 (-)NCBI
Rnor_6.03136,727,928 - 136,936,808 (-)NCBI
Rnor_5.03143,103,727 - 143,381,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235113   ⟹   XP_006235175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,429,811 - 150,707,410 (-)NCBI
mRatBN7.23129,976,264 - 130,253,841 (-)NCBI
Rnor_6.03136,664,048 - 136,936,794 (-)NCBI
Rnor_5.03143,103,727 - 143,381,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762263   ⟹   XP_008760485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,755 (-)NCBI
mRatBN7.23130,045,152 - 130,254,194 (-)NCBI
Rnor_6.03136,727,928 - 136,936,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762265   ⟹   XP_008760487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,687,372 (-)NCBI
mRatBN7.23130,045,152 - 130,233,792 (-)NCBI
Rnor_6.03136,727,928 - 136,916,424 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105039   ⟹   XP_038960967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,434 (-)NCBI
mRatBN7.23130,045,152 - 130,253,866 (-)NCBI
RefSeq Acc Id: XM_039105040   ⟹   XP_038960968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,433 (-)NCBI
mRatBN7.23130,045,152 - 130,253,865 (-)NCBI
RefSeq Acc Id: XM_039105041   ⟹   XP_038960969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,755 (-)NCBI
mRatBN7.23130,045,152 - 130,254,194 (-)NCBI
RefSeq Acc Id: XM_039105042   ⟹   XP_038960970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,436 (-)NCBI
mRatBN7.23130,045,152 - 130,253,868 (-)NCBI
RefSeq Acc Id: XM_039105043   ⟹   XP_038960971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,428,233 - 150,707,408 (-)NCBI
mRatBN7.23129,974,692 - 130,253,839 (-)NCBI
RefSeq Acc Id: XM_039105044   ⟹   XP_038960972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,428,233 - 150,707,406 (-)NCBI
mRatBN7.23129,976,213 - 130,253,838 (-)NCBI
RefSeq Acc Id: XM_063283798   ⟹   XP_063139868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,754 (-)NCBI
RefSeq Acc Id: XM_063283799   ⟹   XP_063139869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,498,709 - 150,707,755 (-)NCBI
RefSeq Acc Id: XM_063283800   ⟹   XP_063139870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,428,233 - 150,707,743 (-)NCBI
RefSeq Acc Id: XR_005501888
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83150,429,784 - 150,707,410 (-)NCBI
mRatBN7.23129,976,236 - 130,253,841 (-)NCBI
RefSeq Acc Id: NP_001101253   ⟸   NM_001107783
- UniProtKB: D3ZFN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235175   ⟸   XM_006235113
- Peptide Label: isoform X12
- UniProtKB: D3ZFN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235170   ⟸   XM_006235108
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZVW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760485   ⟸   XM_008762263
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZVW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760487   ⟸   XM_008762265
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZVW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000031372   ⟸   ENSRNOT00000036273
RefSeq Acc Id: ENSRNOP00000073957   ⟸   ENSRNOT00000083061
RefSeq Acc Id: XP_038960971   ⟸   XM_039105043
- Peptide Label: isoform X9
- UniProtKB: D3ZFN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960972   ⟸   XM_039105044
- Peptide Label: isoform X11
- UniProtKB: D3ZFN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960969   ⟸   XM_039105041
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZVW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960970   ⟸   XM_039105042
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZVW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960967   ⟸   XM_039105039
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZVW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960968   ⟸   XM_039105040
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZVW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082939   ⟸   ENSRNOT00000118037
RefSeq Acc Id: XP_063139870   ⟸   XM_063283800
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063139869   ⟸   XM_063283799
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063139868   ⟸   XM_063283798
- Peptide Label: isoform X4
Protein Domains
Kinesin motor   PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFN9-F1-model_v2 AlphaFold D3ZFN9 1-1311 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692477
Promoter ID:EPDNEW_R2999
Type:multiple initiation site
Name:Kif16b_1
Description:kinesin family member 16B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03136,936,669 - 136,936,729EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310146 AgrOrtholog
BioCyc Gene G2FUF-47639 BioCyc
Ensembl Genes ENSRNOG00000004951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036273 ENTREZGENE
  ENSRNOT00000036273.5 UniProtKB/TrEMBL
  ENSRNOT00000083061.2 UniProtKB/TrEMBL
  ENSRNOT00000118037.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SMAD_FHA_domain UniProtKB/TrEMBL
NCBI Gene 311478 ENTREZGENE
PANTHER STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
PhenoGen Kif16b PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
  PS50195 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004951 RatGTEx
SMART KISc UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  SMAD_FHA UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K6V6_RAT UniProtKB/TrEMBL
  A0A8I5ZVW2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFN9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Kif16b  kinesin family member 16B   Kif16b_predicted  kinesin family member 16B (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kif16b_predicted  kinesin family member 16B (predicted)      Symbol and Name status set to approved 70820 APPROVED