Kif16b (kinesin family member 16B) - Rat Genome Database

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Gene: Kif16b (kinesin family member 16B) Rattus norvegicus
Analyze
Symbol: Kif16b
Name: kinesin family member 16B
RGD ID: 1310146
Description: Predicted to enable several functions, including ATP hydrolysis activity; phosphatidylinositol phosphate binding activity; and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in several processes, including cytosolic transport; regulation of receptor recycling; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within cellular response to interferon-gamma. Predicted to be located in early endosome; phagocytic vesicle; and spindle. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Orthologous to human KIF16B (kinesin family member 16B); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: kinesin-like protein KIF16B; LOC311478
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Kif16bTn(sb-T2/Bart3)2.200Mcwi  
Genetic Models: F344-Kif16bTn(sb-T2/Bart3)2.200Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23129,974,692 - 130,254,194 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl3136,657,480 - 136,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03136,596,621 - 136,936,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03143,103,727 - 143,381,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43130,967,515 - 131,250,402 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13130,874,500 - 131,130,642 (-)NCBI
Celera3128,908,978 - 129,180,308 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:15882625   PMID:17641687   PMID:19144319   PMID:21238925  


Genomics

Comparative Map Data
Kif16b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23129,974,692 - 130,254,194 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl3136,657,480 - 136,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03136,596,621 - 136,936,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03143,103,727 - 143,381,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43130,967,515 - 131,250,402 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13130,874,500 - 131,130,642 (-)NCBI
Celera3128,908,978 - 129,180,308 (-)NCBICelera
Cytogenetic Map3q41NCBI
KIF16B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2016,272,104 - 16,573,448 (-)EnsemblGRCh38hg38GRCh38
GRCh382016,272,104 - 16,573,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372016,252,749 - 16,554,093 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362016,200,749 - 16,502,078 (-)NCBINCBI36hg18NCBI36
Celera2016,327,872 - 16,629,179 (-)NCBI
Cytogenetic Map20p12.1NCBI
HuRef2016,214,467 - 16,516,712 (-)NCBIHuRef
CHM1_12016,252,472 - 16,554,080 (-)NCBICHM1_1
Kif16b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392142,460,260 - 142,743,535 (-)NCBIGRCm39mm39
GRCm39 Ensembl2142,459,394 - 142,743,451 (-)Ensembl
GRCm382142,618,340 - 142,901,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2142,617,474 - 142,901,531 (-)EnsemblGRCm38mm10GRCm38
MGSCv372142,444,081 - 142,727,200 (-)NCBIGRCm37mm9NCBIm37
MGSCv362142,309,786 - 142,592,905 (-)NCBImm8
Celera2143,799,300 - 144,080,607 (-)NCBICelera
Cytogenetic Map2G1NCBI
Kif16b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541525,447,539 - 25,740,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541525,449,734 - 25,740,697 (-)NCBIChiLan1.0ChiLan1.0
KIF16B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12016,210,821 - 16,512,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2016,210,821 - 16,512,618 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02016,229,429 - 16,532,735 (-)NCBIMhudiblu_PPA_v0panPan3
KIF16B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1246,260,558 - 6,576,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl246,261,553 - 6,575,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha246,126,588 - 6,442,971 (+)NCBI
ROS_Cfam_1.0246,666,622 - 6,989,878 (+)NCBI
UMICH_Zoey_3.1246,276,871 - 6,576,736 (+)NCBI
UNSW_CanFamBas_1.0246,372,345 - 6,688,664 (+)NCBI
UU_Cfam_GSD_1.0246,648,582 - 6,963,507 (+)NCBI
Kif16b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640155,012,499 - 155,294,440 (+)NCBI
SpeTri2.0NW_0049364853,443,878 - 3,728,613 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF16B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1724,871,985 - 25,188,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11724,882,139 - 25,188,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21728,210,127 - 28,417,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF16B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1245,189,908 - 45,495,837 (-)NCBI
ChlSab1.1 Ensembl245,189,756 - 45,495,725 (-)Ensembl
Vero_WHO_p1.0NW_0236660545,562,674 - 5,874,409 (-)NCBI
Kif16b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474117,424,335 - 17,750,531 (-)NCBI

Position Markers
D3Mit4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23130,193,298 - 130,193,489 (+)MAPPERmRatBN7.2
Rnor_6.03136,876,155 - 136,876,345NCBIRnor6.0
Rnor_5.03143,321,230 - 143,321,420UniSTSRnor5.0
RGSC_v3.43131,188,558 - 131,188,749RGDRGSC3.4
RGSC_v3.43131,188,559 - 131,188,749UniSTSRGSC3.4
RGSC_v3.13131,094,132 - 131,094,322RGD
RH 3.4 Map31161.8UniSTS
RH 3.4 Map31161.8RGD
RH 2.0 Map3777.9RGD
Cytogenetic Map3q41UniSTS
BM388214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23129,974,760 - 129,974,920 (+)MAPPERmRatBN7.2
Rnor_6.03136,657,775 - 136,657,934NCBIRnor6.0
Rnor_5.03143,103,690 - 143,103,849UniSTSRnor5.0
RGSC_v3.43130,967,476 - 130,967,635UniSTSRGSC3.4
Celera3128,908,939 - 128,909,098UniSTS
RH 3.4 Map31153.2UniSTS
Cytogenetic Map3q41UniSTS
RH126836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23129,975,215 - 129,975,415 (+)MAPPERmRatBN7.2
Rnor_6.03136,658,230 - 136,658,429NCBIRnor6.0
Rnor_5.03143,104,145 - 143,104,344UniSTSRnor5.0
RGSC_v3.43130,967,931 - 130,968,130UniSTSRGSC3.4
Celera3128,909,394 - 128,909,593UniSTS
Cytogenetic Map3q41UniSTS
RH130395  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23130,045,306 - 130,045,503 (+)MAPPERmRatBN7.2
Rnor_6.03136,728,081 - 136,728,277NCBIRnor6.0
Rnor_5.03143,173,457 - 143,173,653UniSTSRnor5.0
RGSC_v3.43131,040,134 - 131,040,330UniSTSRGSC3.4
Celera3128,980,562 - 128,980,758UniSTS
RH 3.4 Map31166.3UniSTS
Cytogenetic Map3q41UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)330846101172879276Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)339248391140271184Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)343295930163640485Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)343295930163640485Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)348561928155263151Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)358204463170534769Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)361241033165369047Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)381136227154416635Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)394788365139788365Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)397009185142009185Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)399465522168732722Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3101058963146058963Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3102152812155263151Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3102466149147466149Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)3103141814176418101Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)3103141814176418101Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3103141814176418101Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3103141944170934860Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3114376250159376250Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3117303473141971336Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3119471263164471263Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3120917788141971336Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)3120917788141971336Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3125848628170848628Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3126575595153412619Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3126575595165355668Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3128986468173986468Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3129787213177699992Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3130006659175006659Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3132875075176418101Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3136876155170935007Rat


Genetic Models
This gene Kif16b is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:207
Count of miRNA genes:145
Interacting mature miRNAs:179
Transcripts:ENSRNOT00000036273
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 26 10 16 10 3 3 2 35 31 11 3
Low 2 43 31 31 3 31 5 8 72 10 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000036273   ⟹   ENSRNOP00000031372
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3136,657,814 - 136,936,650 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083061   ⟹   ENSRNOP00000073957
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3136,657,480 - 136,936,674 (-)Ensembl
RefSeq Acc Id: NM_001107783   ⟹   NP_001101253
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23129,974,800 - 130,254,019 (-)NCBI
Rnor_6.03136,657,814 - 136,936,650 (-)NCBI
Rnor_5.03143,103,727 - 143,381,598 (-)NCBI
RGSC_v3.43130,967,515 - 131,250,402 (-)RGD
Celera3128,908,978 - 129,180,308 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235108   ⟹   XP_006235170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23130,045,152 - 130,254,193 (-)NCBI
Rnor_6.03136,727,928 - 136,936,808 (-)NCBI
Rnor_5.03143,103,727 - 143,381,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235113   ⟹   XP_006235175
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23129,976,264 - 130,253,841 (-)NCBI
Rnor_6.03136,664,048 - 136,936,794 (-)NCBI
Rnor_5.03143,103,727 - 143,381,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762263   ⟹   XP_008760485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23130,045,152 - 130,254,194 (-)NCBI
Rnor_6.03136,727,928 - 136,936,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762265   ⟹   XP_008760487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23130,045,152 - 130,233,792 (-)NCBI
Rnor_6.03136,727,928 - 136,916,424 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105039   ⟹   XP_038960967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23130,045,152 - 130,253,866 (-)NCBI
RefSeq Acc Id: XM_039105040   ⟹   XP_038960968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23130,045,152 - 130,253,865 (-)NCBI
RefSeq Acc Id: XM_039105041   ⟹   XP_038960969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23130,045,152 - 130,254,194 (-)NCBI
RefSeq Acc Id: XM_039105042   ⟹   XP_038960970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23130,045,152 - 130,253,868 (-)NCBI
RefSeq Acc Id: XM_039105043   ⟹   XP_038960971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23129,974,692 - 130,253,839 (-)NCBI
RefSeq Acc Id: XM_039105044   ⟹   XP_038960972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23129,976,213 - 130,253,838 (-)NCBI
RefSeq Acc Id: XR_005501888
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23129,976,236 - 130,253,841 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101253   ⟸   NM_001107783
- UniProtKB: D3ZFN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235175   ⟸   XM_006235113
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006235170   ⟸   XM_006235108
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008760485   ⟸   XM_008762263
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008760487   ⟸   XM_008762265
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000031372   ⟸   ENSRNOT00000036273
RefSeq Acc Id: ENSRNOP00000073957   ⟸   ENSRNOT00000083061
RefSeq Acc Id: XP_038960971   ⟸   XM_039105043
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038960972   ⟸   XM_039105044
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038960969   ⟸   XM_039105041
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038960970   ⟸   XM_039105042
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038960967   ⟸   XM_039105039
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960968   ⟸   XM_039105040
- Peptide Label: isoform X3
Protein Domains
Kinesin motor   PX

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692477
Promoter ID:EPDNEW_R2999
Type:multiple initiation site
Name:Kif16b_1
Description:kinesin family member 16B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03136,936,669 - 136,936,729EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310146 AgrOrtholog
Ensembl Genes ENSRNOG00000004951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000031372 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000073957 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036273 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000083061 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SMAD_FHA_domain UniProtKB/TrEMBL
KEGG Report rno:311478 UniProtKB/TrEMBL
NCBI Gene 311478 ENTREZGENE
PANTHER PTHR24115 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
PhenoGen Kif16b PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
  PS50195 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  SMAD_FHA UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
Transposagen Kif16b Transposagen
UniProt A0A0G2K6V6_RAT UniProtKB/TrEMBL
  D3ZFN9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Kif16b  kinesin family member 16B   Kif16b_predicted  kinesin family member 16B (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kif16b_predicted  kinesin family member 16B (predicted)      Symbol and Name status set to approved 70820 APPROVED