Prdm15 (PR/SET domain 15) - Rat Genome Database

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Gene: Prdm15 (PR/SET domain 15) Rattus norvegicus
Analyze
Symbol: Prdm15
Name: PR/SET domain 15
RGD ID: 1310055
Description: Predicted to enable DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and promoter-specific chromatin binding activity. Predicted to be involved in several processes, including positive regulation of transcription by RNA polymerase II; regulation of signal transduction; and regulation of stem cell division. Predicted to be located in nuclear body. Predicted to be active in cytoplasm and nucleus. Orthologous to human PRDM15 (PR/SET domain 15); PARTICIPATES IN forkhead class A signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; amphetamine; azoxystrobin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304054; PR domain 15; PR domain containing 15; PR domain zinc finger protein 15
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81150,633,973 - 50,691,624 (-)NCBIGRCr8
mRatBN7.21137,164,608 - 37,225,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,165,575 - 37,222,207 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01138,294,040 - 38,354,648 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1138,293,875 - 38,351,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01141,804,204 - 41,860,903 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41137,809,830 - 37,867,635 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11137,870,071 - 37,928,533 (-)NCBI
Celera1137,049,084 - 37,109,577 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15904895   PMID:28740264  


Genomics

Comparative Map Data
Prdm15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81150,633,973 - 50,691,624 (-)NCBIGRCr8
mRatBN7.21137,164,608 - 37,225,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,165,575 - 37,222,207 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01138,294,040 - 38,354,648 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1138,293,875 - 38,351,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01141,804,204 - 41,860,903 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41137,809,830 - 37,867,635 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11137,870,071 - 37,928,533 (-)NCBI
Celera1137,049,084 - 37,109,577 (-)NCBICelera
Cytogenetic Map11q12NCBI
PRDM15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382141,798,225 - 41,879,344 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2141,798,225 - 41,879,482 (-)EnsemblGRCh38hg38GRCh38
GRCh372143,218,385 - 43,299,453 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362142,091,454 - 42,172,660 (-)NCBINCBI36Build 36hg18NCBI36
Build 342142,094,393 - 42,172,660NCBI
Celera2128,368,174 - 28,447,099 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2128,638,181 - 28,644,572 (-)NCBIHuRef
HuRef2128,648,979 - 28,667,142 (-)NCBIHuRef
HuRef2128,673,524 - 28,716,923 (-)NCBIHuRef
CHM1_12142,779,228 - 42,860,431 (-)NCBICHM1_1
T2T-CHM13v2.02140,188,592 - 40,269,664 (-)NCBIT2T-CHM13v2.0
Prdm15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391697,592,720 - 97,653,076 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1697,592,667 - 97,653,050 (-)EnsemblGRCm39 Ensembl
GRCm381697,791,467 - 97,851,875 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1697,791,467 - 97,851,850 (-)EnsemblGRCm38mm10GRCm38
MGSCv371698,013,074 - 98,072,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361697,946,383 - 98,006,787 (-)NCBIMGSCv36mm8
Celera1698,842,778 - 98,902,764 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1657.66NCBI
Prdm15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,680,770 - 39,712,104 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,680,757 - 39,714,917 (+)NCBIChiLan1.0ChiLan1.0
PRDM15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22237,868,927 - 37,950,136 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12132,723,230 - 32,804,330 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02128,122,173 - 28,202,837 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12141,447,858 - 41,526,020 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2141,447,858 - 41,526,888 (-)Ensemblpanpan1.1panPan2
PRDM15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13136,220,532 - 36,285,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3136,223,507 - 36,286,699 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3135,372,966 - 35,437,691 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03135,737,890 - 35,802,685 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3135,738,965 - 35,802,858 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13135,631,878 - 35,696,603 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03135,611,253 - 35,676,091 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03136,105,756 - 36,170,626 (-)NCBIUU_Cfam_GSD_1.0
Prdm15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497135,491,630 - 35,536,181 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,940,134 - 1,973,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,939,075 - 1,976,194 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRDM15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13205,173,517 - 205,241,490 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113205,174,356 - 205,241,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213215,499,016 - 215,567,810 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRDM15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1285,686,292 - 85,761,365 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl285,685,932 - 85,742,611 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605413,545,118 - 13,620,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prdm15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474528,396,485 - 28,441,450 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474528,401,163 - 28,440,597 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Prdm15
174 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:93
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000046318, ENSRNOT00000066712
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat

Markers in Region
D11Rat48  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,184,135 - 37,184,372 (+)MAPPERmRatBN7.2
Rnor_6.01138,313,571 - 38,313,805NCBIRnor6.0
Rnor_5.01141,823,434 - 41,823,668UniSTSRnor5.0
RGSC_v3.41137,829,096 - 37,829,331RGDRGSC3.4
RGSC_v3.41137,829,098 - 37,829,332UniSTSRGSC3.4
Celera1137,068,498 - 37,068,734UniSTS
FHH x ACI Map1116.5799UniSTS
FHH x ACI Map1116.5799RGD
Cytogenetic Map11q12UniSTS
AI449533  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,225,424 - 37,225,671 (+)MAPPERmRatBN7.2
Rnor_6.01138,354,850 - 38,355,096NCBIRnor6.0
Rnor_5.01141,864,713 - 41,864,959UniSTSRnor5.0
RGSC_v3.41137,870,796 - 37,871,042UniSTSRGSC3.4
Celera1137,109,779 - 37,110,025UniSTS
Cytogenetic Map11q12UniSTS
RH131649  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,225,391 - 37,225,598 (+)MAPPERmRatBN7.2
Rnor_6.01138,354,817 - 38,355,023NCBIRnor6.0
Rnor_5.01141,864,680 - 41,864,886UniSTSRnor5.0
RGSC_v3.41137,870,763 - 37,870,969UniSTSRGSC3.4
Celera1137,109,746 - 37,109,952UniSTS
RH 3.4 Map11263.9UniSTS
Cytogenetic Map11q12UniSTS
RH132416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,165,640 - 37,165,851 (+)MAPPERmRatBN7.2
Rnor_6.01138,295,073 - 38,295,283NCBIRnor6.0
Rnor_5.01141,805,237 - 41,805,447UniSTSRnor5.0
RGSC_v3.41137,810,868 - 37,811,078UniSTSRGSC3.4
Celera1137,050,117 - 37,050,327UniSTS
RH 3.4 Map11265.0UniSTS
Cytogenetic Map11q12UniSTS
RH137768  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,198,513 - 37,198,741 (+)MAPPERmRatBN7.2
Rnor_6.01138,327,945 - 38,328,172NCBIRnor6.0
Rnor_5.01141,837,808 - 41,838,035UniSTSRnor5.0
RGSC_v3.41137,843,471 - 37,843,698UniSTSRGSC3.4
Celera1137,082,869 - 37,083,096UniSTS
RH 3.4 Map11264.3UniSTS
Cytogenetic Map11q12UniSTS
UniSTS:259130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,167,525 - 37,168,682 (+)MAPPERmRatBN7.2
Rnor_6.01138,296,958 - 38,298,112NCBIRnor6.0
Rnor_5.01141,807,122 - 41,808,276UniSTSRnor5.0
RGSC_v3.41137,812,753 - 37,813,908UniSTSRGSC3.4
Celera1137,052,002 - 37,053,145UniSTS
Cytogenetic Map11q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 3 2 2 2 51 12 22
Low 3 39 54 39 17 39 8 11 23 23 19 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000046318   ⟹   ENSRNOP00000041592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1137,165,575 - 37,222,207 (-)Ensembl
Rnor_6.0 Ensembl1138,293,875 - 38,351,184 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114092   ⟹   ENSRNOP00000084210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1137,165,575 - 37,222,207 (-)Ensembl
RefSeq Acc Id: NM_001427299   ⟹   NP_001414228
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,589 (-)NCBI
RefSeq Acc Id: XM_017598097   ⟹   XP_017453586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,624 (-)NCBI
mRatBN7.21137,167,256 - 37,225,172 (-)NCBI
Rnor_6.01138,294,040 - 38,354,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598100   ⟹   XP_017453589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,678,696 (-)NCBI
mRatBN7.21137,167,256 - 37,209,333 (-)NCBI
Rnor_6.01138,294,040 - 38,339,031 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088802   ⟹   XP_038944730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,478 (-)NCBI
mRatBN7.21137,164,608 - 37,222,093 (-)NCBI
RefSeq Acc Id: XM_039088803   ⟹   XP_038944731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,477 (-)NCBI
mRatBN7.21137,167,256 - 37,222,092 (-)NCBI
RefSeq Acc Id: XM_039088804   ⟹   XP_038944732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,476 (-)NCBI
mRatBN7.21137,167,256 - 37,222,092 (-)NCBI
RefSeq Acc Id: XM_039088805   ⟹   XP_038944733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,477 (-)NCBI
mRatBN7.21137,167,256 - 37,222,094 (-)NCBI
RefSeq Acc Id: XM_039088807   ⟹   XP_038944735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,615 (-)NCBI
mRatBN7.21137,167,256 - 37,225,172 (-)NCBI
RefSeq Acc Id: XM_039088808   ⟹   XP_038944736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,658,232 (-)NCBI
mRatBN7.21137,167,256 - 37,188,869 (-)NCBI
RefSeq Acc Id: XM_063270569   ⟹   XP_063126639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,624 (-)NCBI
RefSeq Acc Id: XM_063270570   ⟹   XP_063126640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,624 (-)NCBI
RefSeq Acc Id: XM_063270571   ⟹   XP_063126641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,475 (-)NCBI
RefSeq Acc Id: XM_063270572   ⟹   XP_063126642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,633,973 - 50,691,476 (-)NCBI
RefSeq Acc Id: XP_017453586   ⟸   XM_017598097
- Peptide Label: isoform X2
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453589   ⟸   XM_017598100
- Peptide Label: isoform X10
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000041592   ⟸   ENSRNOT00000046318
RefSeq Acc Id: XP_038944730   ⟸   XM_039088802
- Peptide Label: isoform X1
- UniProtKB: D3ZQ99 (UniProtKB/TrEMBL),   A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944735   ⟸   XM_039088807
- Peptide Label: isoform X1
- UniProtKB: D3ZQ99 (UniProtKB/TrEMBL),   A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944733   ⟸   XM_039088805
- Peptide Label: isoform X5
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944732   ⟸   XM_039088804
- Peptide Label: isoform X6
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944731   ⟸   XM_039088803
- Peptide Label: isoform X3
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944736   ⟸   XM_039088808
- Peptide Label: isoform X11
RefSeq Acc Id: ENSRNOP00000084210   ⟸   ENSRNOT00000114092
RefSeq Acc Id: XP_063126640   ⟸   XM_063270570
- Peptide Label: isoform X7
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126639   ⟸   XM_063270569
- Peptide Label: isoform X4
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414228   ⟸   NM_001427299
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126642   ⟸   XM_063270572
- Peptide Label: isoform X9
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126641   ⟸   XM_063270571
- Peptide Label: isoform X8
- UniProtKB: A6IQH4 (UniProtKB/TrEMBL),   A0A8I5ZYR1 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   SET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQ99-F1-model_v2 AlphaFold D3ZQ99 1-1148 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310055 AgrOrtholog
BioCyc Gene G2FUF-21675 BioCyc
Ensembl Genes ENSRNOG00000001620 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046318.6 UniProtKB/TrEMBL
  ENSRNOT00000114092.1 UniProtKB/TrEMBL
Gene3D-CATH 2.170.270.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro PRDM15_PR-SET UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 304054 ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  PR_SET DOMAIN 15 UniProtKB/TrEMBL
  PROTEIN ESCARGOT UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam PRDM2_PR UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_4 UniProtKB/TrEMBL
PhenoGen Prdm15 PhenoGen
PROSITE SET UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001620 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZYR1 ENTREZGENE, UniProtKB/TrEMBL
  A6IQH4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQ99 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-27 Prdm15  PR/SET domain 15  Prdm15  PR domain 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-03 Prdm15  PR domain 15  Prdm15  PR domain containing 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Prdm15  PR domain containing 15   Prdm15_predicted  PR domain containing 15 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Prdm15_predicted  PR domain containing 15 (predicted)      Symbol and Name status set to approved 70820 APPROVED