Tnrc6c (trinucleotide repeat containing adaptor 6C) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Tnrc6c (trinucleotide repeat containing adaptor 6C) Rattus norvegicus
Analyze
Symbol: Tnrc6c
Name: trinucleotide repeat containing adaptor 6C
RGD ID: 1310027
Description: Predicted to enable nucleic acid binding activity. Predicted to be involved in miRNA-mediated gene silencing; positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within several processes, including embryonic hemopoiesis; endoderm formation; and lung saccule development. Predicted to be located in cytosol. Predicted to be active in P-body and nucleoplasm. Orthologous to human TNRC6C (trinucleotide repeat containing adaptor 6C); PARTICIPATES IN microRNA pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC303774; RGD1310027; similar to KIAA1582 protein; trinucleotide repeat containing 6C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210102,908,958 - 102,979,543 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10102,868,828 - 102,978,194 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010106,698,359 - 106,763,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,712,127 - 106,762,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,337,197 - 106,403,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410107,829,754 - 107,854,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10101,489,423 - 101,539,688 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (TAS)
nucleoplasm  (IBA)
P-body  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21984185   PMID:22187428   PMID:23172285  


Genomics

Comparative Map Data
Tnrc6c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210102,908,958 - 102,979,543 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10102,868,828 - 102,978,194 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010106,698,359 - 106,763,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,712,127 - 106,762,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,337,197 - 106,403,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410107,829,754 - 107,854,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10101,489,423 - 101,539,688 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
TNRC6C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381777,957,557 - 78,108,835 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1777,958,703 - 78,108,822 (+)EnsemblGRCh38hg38GRCh38
GRCh371775,953,639 - 76,104,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,556,589 - 73,612,616 (+)NCBINCBI36Build 36hg18NCBI36
Build 341773,556,588 - 73,612,616NCBI
Celera1772,596,318 - 72,700,896 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,424,371 - 71,528,917 (+)NCBIHuRef
CHM1_11776,065,011 - 76,169,559 (+)NCBICHM1_1
T2T-CHM13v2.01778,851,592 - 79,002,521 (+)NCBIT2T-CHM13v2.0
Tnrc6c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,544,529 - 117,654,265 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,545,115 - 117,654,265 (+)EnsemblGRCm39 Ensembl
GRCm3811117,653,703 - 117,763,439 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,654,289 - 117,763,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,515,603 - 117,624,753 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,470,379 - 117,579,529 (+)NCBIMGSCv36mm8
Celera11129,397,726 - 129,507,237 (+)NCBICelera
Cytogenetic Map11E2NCBI
Tnrc6c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,440,555 - 4,559,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,440,555 - 4,579,642 (-)NCBIChiLan1.0ChiLan1.0
TNRC6C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11798,836,241 - 98,986,328 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,035,737 - 72,185,489 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11777,634,111 - 77,738,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,633,564 - 77,738,511 (+)Ensemblpanpan1.1panPan2
TNRC6C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.193,018,599 - 3,122,664 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl93,020,533 - 3,171,471 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,701,674 - 3,805,806 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,696,277 - 3,800,626 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,698,224 - 3,777,294 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,721,379 - 3,823,452 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,843,625 - 3,947,774 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,925,070 - 4,029,400 (-)NCBIUU_Cfam_GSD_1.0
Tnrc6c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,670,705 - 3,761,602 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,656,045 - 2,741,233 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365942,656,079 - 2,741,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNRC6C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,847,901 - 3,935,368 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,847,522 - 3,939,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNRC6C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,610,595 - 43,718,117 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1643,613,223 - 43,717,852 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607714,328,740 - 14,463,687 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnrc6c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248017,552,030 - 7,638,834 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248017,552,644 - 7,644,755 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnrc6c
254 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:71
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000040629
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)1090910316107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat

Markers in Region
RH132900  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210102,979,127 - 102,979,330 (+)MAPPERmRatBN7.2
Rnor_6.010106,763,926 - 106,764,128NCBIRnor6.0
Rnor_5.010106,402,682 - 106,402,884UniSTSRnor5.0
Celera10101,539,975 - 101,540,177UniSTS
Cytogenetic Map10q32.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 30 22 6 19 6 4 4 74 32 41 11 4
Low 1 13 35 35 35 4 7 3 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000040629   ⟹   ENSRNOP00000049430
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10102,868,828 - 102,978,194 (+)Ensembl
Rnor_6.0 Ensembl10106,712,127 - 106,762,043 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106642   ⟹   ENSRNOP00000085529
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10102,870,005 - 102,978,194 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107522   ⟹   ENSRNOP00000083952
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10102,870,055 - 102,978,194 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117677   ⟹   ENSRNOP00000077867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10102,868,828 - 102,978,194 (+)Ensembl
RefSeq Acc Id: XM_017597752   ⟹   XP_017453241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210102,908,958 - 102,977,046 (+)NCBI
Rnor_6.010106,712,126 - 106,761,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597754   ⟹   XP_017453243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210102,908,958 - 102,979,543 (+)NCBI
Rnor_6.010106,698,359 - 106,761,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039087486   ⟹   XP_038943414
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210102,923,703 - 102,977,046 (+)NCBI
RefSeq Acc Id: XM_039087487   ⟹   XP_038943415
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210102,908,958 - 102,979,543 (+)NCBI
RefSeq Acc Id: XM_039087488   ⟹   XP_038943416
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210102,936,986 - 102,979,543 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_017453243   ⟸   XM_017597754
- Peptide Label: isoform X1
- UniProtKB: D3ZRA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453241   ⟸   XM_017597752
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000049430   ⟸   ENSRNOT00000040629
RefSeq Acc Id: XP_038943415   ⟸   XM_039087487
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y248 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943414   ⟸   XM_039087486
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038943416   ⟸   XM_039087488
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000085529   ⟸   ENSRNOT00000106642
RefSeq Acc Id: ENSRNOP00000083952   ⟸   ENSRNOT00000107522
RefSeq Acc Id: ENSRNOP00000077867   ⟸   ENSRNOT00000117677
Protein Domains
UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRA6-F1-model_v2 AlphaFold D3ZRA6 1-1683 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310027 AgrOrtholog
BioCyc Gene G2FUF-22545 BioCyc
Ensembl Genes ENSRNOG00000022395 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000049430 ENTREZGENE
  ENSRNOP00000049430.6 UniProtKB/TrEMBL
  ENSRNOP00000077867 ENTREZGENE
  ENSRNOP00000077867.1 UniProtKB/TrEMBL
  ENSRNOP00000083952 ENTREZGENE
  ENSRNOP00000083952.1 UniProtKB/TrEMBL
  ENSRNOP00000085529.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040629 ENTREZGENE
  ENSRNOT00000040629.6 UniProtKB/TrEMBL
  ENSRNOT00000106642.1 UniProtKB/TrEMBL
  ENSRNOT00000107522 ENTREZGENE
  ENSRNOT00000107522.1 UniProtKB/TrEMBL
  ENSRNOT00000117677 ENTREZGENE
  ENSRNOT00000117677.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro Argonaute_hook_dom UniProtKB/TrEMBL
  GW182_M_dom UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  TNR6C_UBA UniProtKB/TrEMBL
  TNRC6_PABC-bd UniProtKB/TrEMBL
  TNRC6C_RRM UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  UBA/transl_elong_EF1B_N_euk UniProtKB/TrEMBL
KEGG Report rno:303774 UniProtKB/TrEMBL
NCBI Gene 303774 ENTREZGENE
PANTHER PTHR13020:SF9 UniProtKB/TrEMBL
  TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 UniProtKB/TrEMBL
Pfam Ago_hook UniProtKB/TrEMBL
  M_domain UniProtKB/TrEMBL
  TNRC6-PABC_bdg UniProtKB/TrEMBL
PhenoGen Tnrc6c PhenoGen
PROSITE UBA UniProtKB/TrEMBL
SMART UBA UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt A0A8I5Y248 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GBB3_RAT UniProtKB/TrEMBL
  A0A8I6GD00_RAT UniProtKB/TrEMBL
  D3ZRA6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Tnrc6c  trinucleotide repeat containing adaptor 6C  Tnrc6c  trinucleotide repeat containing 6C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-22 Tnrc6c  trinucleotide repeat containing 6C  RGD1310027  similar to KIAA1582 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310027  similar to KIAA1582 protein   RGD1310027_predicted  similar to KIAA1582 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310027_predicted  similar to KIAA1582 protein (predicted)  LOC303774_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303774_predicted  similar to KIAA1582 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL