Hnrnpdl (heterogeneous nuclear ribonucleoprotein D-like)

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Gene: Hnrnpdl (heterogeneous nuclear ribonucleoprotein D-like) Rattus norvegicus

Analyze

Symbol:

Hnrnpdl

Name:

heterogeneous nuclear ribonucleoprotein D-like

RGD ID:

1309950

Description:

Predicted to have nucleic acid binding activity. Predicted to be involved in regulation of gene expression. Predicted to localize to nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

hnRNP D-like; hnRNP DL; hnRNP-DL; hnRPD-like protein; Hnrpdl; LOC305178; MGC125262

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI
Rnor_6.0 Ensembl	14	11,198,896 - 11,202,669 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	14	11,199,114 - 11,204,670 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	14	11,142,952 - 11,148,504 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	10,861,054 - 10,864,322 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	10,860,747 - 10,865,255 (+)	NCBI
Celera	14	9,659,535 - 9,662,803 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant limb-girdle muscular dystrophy type 3 (ISO)

chromosome 4q21 deletion syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

acetylsalicylic acid (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

Aroclor 1254 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

diallyl trisulfide (ISO)

dibutyl phthalate (EXP,ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

irinotecan (ISO)

lovastatin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

morphine (ISO)

N-methyl-4-phenylpyridinium (ISO)

nitroprusside (ISO)

ouabain (ISO)

ozone (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

pyrogallol (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

Soman (EXP)

succimer (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

topotecan (ISO)

Tributyltin oxide (ISO)

troglitazone (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vincristine (ISO)

warfarin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of gene expression (IBA,ISO)

Cellular Component

cytoplasm (IEA)

nucleoplasm (IBA,ISO)

nucleus (IEA,ISO)

Molecular Function

DNA binding (IEA)

double-stranded DNA binding (ISO)

poly(A) binding (IBA,ISO)

poly(G) binding (IBA,ISO)

protein binding (ISO)

RNA binding (IBA,IEA)

single-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline
4.	RGD automated data pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9538234	PMID:10717477	PMID:12477932	PMID:22658674	PMID:22681889	PMID:23376485	PMID:25931508	PMID:26316108	PMID:29476059

Genomics

Comparative Map Data

Hnrnpdl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI
Rnor_6.0 Ensembl	14	11,198,896 - 11,202,669 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	14	11,199,114 - 11,204,670 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	14	11,142,952 - 11,148,504 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	10,861,054 - 10,864,322 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	10,860,747 - 10,865,255 (+)	NCBI
Celera	14	9,659,535 - 9,662,803 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

HNRNPDL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	82,422,565 - 82,430,462 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	4	82,422,564 - 82,430,408 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	82,422,564 - 82,430,462 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	83,343,717 - 83,351,615 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	83,563,371 - 83,570,402 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	4	80,635,634 - 80,642,665 (-)	NCBI
Cytogenetic Map	4	q21.22	NCBI
HuRef	4	79,085,093 - 79,092,735 (-)	NCBI		HuRef
CHM1_1	4	83,320,226 - 83,327,863 (-)	NCBI		CHM1_1

Hnrnpdl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	100,181,436 - 100,187,769 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	5	100,181,436 - 100,187,523 (-)	Ensembl
GRCm38	5	100,033,577 - 100,039,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	100,033,577 - 100,039,664 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	100,462,596 - 100,468,241 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	100,275,023 - 100,279,179 (-)	NCBI			mm8
Celera	5	97,347,081 - 97,352,727 (-)	NCBI		Celera
Cytogenetic Map	5	E4	NCBI
cM Map	5	48.46	NCBI

Hnrnpdl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	6,512,399 - 6,522,377 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	6,515,509 - 6,522,081 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPDL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	47,621,973 - 47,628,893 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	47,621,973 - 47,628,885 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	41,771,512 - 41,777,135 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

HNRNPDL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	6,401,266 - 6,408,006 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	6,402,762 - 6,407,845 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	35,473,221 - 35,479,998 (+)	NCBI
ROS_Cfam_1.0	32	6,424,627 - 6,431,432 (-)	NCBI
UMICH_Zoey_3.1	32	6,496,916 - 6,503,771 (-)	NCBI
UNSW_CanFamBas_1.0	32	6,361,500 - 6,368,282 (-)	NCBI
UU_Cfam_GSD_1.0	32	33,594,663 - 33,601,440 (+)	NCBI

Hnrnpdl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_ltri_2	NW_024405285	5,901,016 - 5,906,269 (+)	NCBI
SpeTri2.0	NW_004936738	2,063,109 - 2,068,099 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPDL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	135,802,894 - 135,809,866 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	135,802,530 - 135,809,871 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	145,172,725 - 145,177,162 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPDL
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	30,804,807 - 30,810,539 (-)	NCBI
ChlSab1.1 Ensembl	7	30,805,749 - 30,810,720 (-)	Ensembl

Hnrnpdl
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624757	8,488,619 - 8,495,498 (+)	NCBI

Position Markers

RH143237

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	6,475,551 - 6,475,799	NCBI	Rnor6.0
Rnor_5.0	9	5,522,043 - 5,522,291	UniSTS	Rnor5.0
Celera	9	4,513,889 - 4,514,137	UniSTS
Cytogenetic Map	14	p22	UniSTS

HNRPDL

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	11,200,654 - 11,202,118	NCBI	Rnor6.0
Rnor_5.0	14	11,144,489 - 11,145,953	UniSTS	Rnor5.0
RGSC_v3.4	14	10,862,304 - 10,863,768	UniSTS	RGSC3.4
Celera	14	9,660,785 - 9,662,249	UniSTS
Cytogenetic Map	14	p22	UniSTS

HNRPDL

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	11,199,489 - 11,200,591	NCBI	Rnor6.0
Rnor_5.0	14	11,143,324 - 11,144,426	UniSTS	Rnor5.0
RGSC_v3.4	14	10,861,139 - 10,862,241	UniSTS	RGSC3.4
Celera	14	9,659,620 - 9,660,722	UniSTS
Cytogenetic Map	14	p22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	4833233	26466248	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	2227825	19230541	Rat
71115	Niddm15	Non-insulin dependent diabetes mellitus QTL 15	4.8		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	2227825	12680613	Rat
619619	Rf4	Renal disease susceptibility QTL 4	4.1	0.002	total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	14	1	34403399	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	10539977	55539977	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	4833233	33040042	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	9756435	72854397	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	10729268	61873323	Rat
2300159	Bmd61	Bone mineral density QTL 61	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	27597761	Rat
2300183	Bmd60	Bone mineral density QTL 60	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	27597761	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	42766285	Rat
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	4833233	23004027	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	4833233	19909932	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	14	4833233	19909932	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	10539977	55539977	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	41333960	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	41333960	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	40
Count of miRNA genes:	34
Interacting mature miRNAs:	40
Transcripts:	ENSRNOT00000003106
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_359349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_359350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000003106 ⟹ ENSRNOP00000003106

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	11,199,404 - 11,202,669 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079767 ⟹ ENSRNOP00000075589

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	11,198,896 - 11,202,325 (+)	Ensembl

RefSeq Acc Id:

NM_001033696 ⟹ NP_001028868

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,383 - 9,561,651 (+)	NCBI
Rnor_6.0	14	11,199,404 - 11,202,672 (+)	NCBI
Rnor_5.0	14	11,142,952 - 11,148,504 (+)	NCBI
RGSC_v3.4	14	10,861,054 - 10,864,322 (+)	RGD
Celera	14	9,659,535 - 9,662,803 (+)	RGD

Sequence:

show sequence

TTTAAATCTAGCTCCATACAACGCTCCGCCGCCGCTGCCCCCGGGACCCGGACTGCGCGCCAGC
ACCCCCTTGCCGACGGCTCCGCCACCATGGAGGACATGAATGAGTACAGCAACATAGAGGAGTT
CGCAGAGGGATCCAAGATCAACGCGAGCAAGAACCAGCAGGATGACGGGTACCGCACGCTCCGC
TCTTCCCCTCCCCCAGAGCCCCGCGCGCGCCCTTCGTCCCTCTGGAGCCGCGCGCGCTGCCCCC
AGTCTTTCCCCGAGTCGATTCTCCGCGTGCCCGCTGGACCCCAGTAGCTTCCCCACTAGCGGAA
ATAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGATCTGACTGAATATTTGTC
TCGGTTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCACTGGAAGATCAAGAGGA
TTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTGGATAAGGTTTTGGAACTGAAGGAACACA
AACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAGGGGAAAGAACCCCCTAA
AAAGGTTTTTGTGGGTGGATTGAGTCCAGATACTTCAGAAGAACAAATTAAAGAATATTTTGGA
GCCTTCGGAGAGATAGAAAACATTGAGCTGCCCATGGATACGAAGACTAATGAGAGAAGAGGAT
TCTGTTTTATCACATACACAGACGAAGAGCCAGTAAAGAAACTGTTAGAAAGCAGATACCATCA
GATAGGCTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTGTACAGGCAGCAGCAG
CAGCAACAGAAAGGTGGAAGAGGGGCTGCGGCTGGTGGAAGAGGTGGTGCTAGGGGACGCGGAA
GAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTA
TAATAGTGCCTATGGTGATGAGAGCTATAGTGGCTATGGCGGCTATGACTATACGGGGTATAAC
TATGGGAGCTATGGATATGGACAGGGATATACAGACTACAGCGGTCAGCAGAGCACTTATGGCA
AGGCATCCCGAGGGGGTGGCAATCACCAGAACAATTACCAGCCCTACTAAAGGAGGACGCTGGG
AGAGCAGCGGGAACTTCATTGCAGGCCGTGTGTCACCCTGACCACGTCTATCTCTGGGGGTCGC
ACGTTGCGGGCAGAGCGCAAGGCATACACCAGAAAACGCTGTCCTGTGGTATGGTCTCTTCCAA
CTTCATGTACCAGCGTAAAGATTAAAGTGGAAAACCAGAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250662 ⟹ XP_006250724

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI
Rnor_6.0	14	11,199,114 - 11,204,670 (+)	NCBI
Rnor_5.0	14	11,142,952 - 11,148,504 (+)	NCBI

Sequence:

show sequence

TGCTCCTCACCCGGAGCCCCGCGATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATT
GTTCCCCTCGGCTCCCGCTACTTTAGCCTCCCGCAGCCTTTCCCATTGGCGGCCGCGGGCTCCG
CGGCAGCTCGCCCCTCTCCTCCCTTCGCTCGCTTCCAGCTCTTCCCGGCAGGGGGCGCGCCGGA
CCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCAGCTATAAAGGGAGG
GCGCAGGCGGCGGCCGGATCTCTTCCGCCGCCATTTTAAATCTAGCTCCATACAACGCTCCGCC
GCCGCTGCCCCCGGGACCCGGACTGCGCGCCAGCACCCCCTTGCCGACGGCTCCGCCACCATGG
AGGACATGAATGAGTACAGCAACATAGAGGAGTTCGCAGAGGGATCCAAGATCAACGCGAGCAA
GAACCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGAT
CTGACTGAATATTTGTCTCGGTTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCA
CTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTGGATAAGGTTTT
GGAACTGAAGGAACACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAG
GGGAAAGAACCCCCTAAAAAGGTTTTTGTGGGTGGATTGAGTCCAGATACTTCAGAAGAACAAA
TTAAAGAATATTTTGGAGCCTTCGGAGAGATAGAAAACATTGAGCTGCCCATGGATACGAAGAC
TAATGAGAGAAGAGGATTCTGTTTTATCACATACACAGACGAAGAGCCAGTAAAGAAACTGTTA
GAAAGCAGATACCATCAGATAGGCTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGG
TGTACAGGCAGCAGCAGCAGCAACAGAAAGGTGGAAGAGGGGCTGCGGCTGGTGGAAGAGGTGG
TGCTAGGGGACGCGGAAGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGAT
CAAGGATATGGAAATTATAATAGTGCCTATGGTGATGAGAGCTATAGTGGCTATGGCGGCTATG
ACTATACGGGGTATAACTATGGGAGCTATGGATATGGACAGGGATATACAGACTACAGCGGTCA
GCAGAGCACTTATGGCAAGGCATCCCGAGGGGGTGGCAATCACCAGAACAATTACCAGCCCTAC
TAAAGGAGGACGCTGGGAGAGCAGCGGGAACTTCATTGCAGGCCGTGTGTCACCCTGACCACGT
CTATCTCTGGGGGTCGCACGTTGCGGGCAGAGCGCAAGGCATACACCAGAAAACGCTGTCCTGT
GGTATGGTCTCTTCCAACTTCATGTACCAGCGTAAAGATTAAAGTGGAAAACCAGACTTTGGCT
GCTTTTTTAATCTTTTTGGAGACTAAGTGTCTAAACTTAACTTAAATGGTTTTTTACAGGAGTT
AAAGTACATAAATGCCTTTTTACAGCTTAATCATTTTGGTCTTCTGTTTAGTGTTGTATTTCAA
TTGTGGAGCCTCATTTTAAGTGTTCATTCTTTAAGATTTAATGCTTGCTTTTTCTTTTTATAGC
TAATAGTGAAATCTACAAACCAAAACAAGAACTTTTAAATCTGGGATGTAAGTTAAAGATCATA
TGCACAAAGCAATTGGCTCTCACTATGTGTCCTAACTATGGCAGCTGCCGGGAATTCATTGGTA
GCACTCCAGTTGGCTCACCTGATGCTTCTGGTTGGCCCTCACCTGTTAGACTCATAACAGGGAA
GATTGCATTCCCATGTTCTAAGTTGAATCCGTTCAGTGTCGTTGGAACTCCAGCGAGTTTCAAT
CCCCAAACTGTGCTTTGCTGGTCACTATGCATGTGATCTTTAATTGAAGTGAGGACTTAAAGCA
GTTCATGAAAGTGGACCTTTTACAAGCTTGTGGGGACCGCACACATCTAATGGGTGTTTTGTTT
TTGTTTTAGGAGGTGTAAAGAAACCATCTTACAGGACGACATTGAAGGTTGCTTGATCTTCTGT
TGACCTAAGATGATTATTTTGTAAAGACTTTGTAGTGTACATGACACAATTGTGTCCCACTGTA
CATAGCTGCCAATTAGTTCCTTTGTTAATCTGTCCTTTGTTCCTTCCCTGTGTTATGACTCAAT
GTGGATTTGTGTTTATACAAATTTTTATTTGTGTGACTTCATGTTCAACCTCAAATAAATGCTT
CCTTATGTGATTGTTTTTCTGCGTCAGGTACTGCATAGTTCTGTGGAAATGTAATTTTATAAAG
AAGCAATAACTTAAGGCGCAGCTTGTTTTGTAGGGGGTATTGGTCCACAGAAGAGACTGCTCAT
GGTATCTCCTTGTCTCTGGTTTCTGTGGGTGTTATTCTGTACTTAAAGTCTAATGCTTTTTCTC
TGTTGATTCCTTCCACACCTTTGGAATAATGTTTCCCCCTGGGTATCTGGAGACTGACACTAGT
CTGTTTTGATTGGTGACACGTGGTGTGCTTTTGGATTATGGTTCTAAGGGAAGCACCTTGCTGG
GCTAGGCTGTACCTCACTGGCAAGTATTCTTTGCCGGAGCACAAATGATGCCCTTGTTTCTGTC
CCTCACTGTTGAAATGAACCTGTTGGCTACCACAAAGCTTGTCAGTTGACTACCTTTGCTCTAT
GCCTATCTGACAAACCATGTGTAATTCACAGATGACTTTAAAGAGCTGGTGGTTTGTCTGTTAG
ATCAGAGGTAAATGCAGAGGAAGAACGCTGTCCAACTGGTGCCCAGATCATCAGTTTCATCTGG
GATTAGCCACTAAGTGGGTGCAGTGGGGTGAGTTTGTCCCACCACAGTACCTGAGCTAAACAGA
ACAGTTTGATATTGAGGCGGGGTGGGGGGGGCGAGTTGTGGAAAGTTACATGGTGTGTATCTTG
TGGTGCATTTAAAACTTTAAGGATTTAACAGTAATACAGGCTTTGGGTTTTTTCGGGAAATGTT
GGGCTTAGAGGTCTCCACGGTTCCACAAAAGCTTCTGGGTTTGGGGGGTATGTTTAGAGTGCCT
GGTCTTAGACCAGTGTAAGCTTTTTATACTGATACCTTTTTTTAAATGCCTACGACTTTGTTCC
ATGATATTTGTACTTGCTAGCAAGGCTGTCAAGTTACCATGCCTTGGCCTGATTTTCCTCTGGC
CTGGTACCAGTGTTGGCCATTAAAAAAGAACTGTTTGTTTCAACTTGCAGCCAGAAAGTAGAAG
GGAGATCATTTCACATTGTTAGTAGGTACAGTATCCAGAGAAAGATACCTGTGAGTTCAAGCTT
ACAATTAGGTGACAAGTTGACATTGAGATTGTCATTTCCCCTGATCAAAATGAATAAAGTCTTT
TTAAAA

hide sequence

RefSeq Acc Id:

XM_006250663 ⟹ XP_006250725

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI
Rnor_6.0	14	11,199,114 - 11,204,670 (+)	NCBI
Rnor_5.0	14	11,142,952 - 11,148,504 (+)	NCBI

Sequence:

show sequence

TGCTCCTCACCCGGAGCCCCGCGATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATT
GTTCCCCTCGGCTCCCGCTACTTTAGCCTCCCGCAGCCTTTCCCATTGGCGGCCGCGGGCTCCG
CGGCAGCTCGCCCCTCTCCTCCCTTCGCTCGCTTCCAGCTCTTCCCGGCAGGGGGCGCGCCGGA
CCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCAGCTATAAAGGGAGG
GCGCAGGCGGCGGCCGGATCTCTTCCGCCGCCATTTTAAATCTAGCTCCATACAACGCTCCGCC
GCCGCTGCCCCCGGGACCCGGACTGCGCGCCAGCACCCCCTTGCCGACGGCTCCGCCACCATGG
AGGACATGAATGAGTACAGCAACATAGAGGAGTTCGCAGAGGGATCCAAGATCAACGCGAGCAA
GAACCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGAT
CTGACTGAATATTTGTCTCGGTTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCA
CTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTGGATAAGGTTTT
GGAACTGAAGGAACACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAG
GGGAAAGAACCCCCTAAAAAGGTTTTTGTGGGTGGATTGAGTCCAGATACTTCAGAAGAACAAA
TTAAAGAATATTTTGGAGCCTTCGGAGAGATAGAAAACATTGAGCTGCCCATGGATACGAAGAC
TAATGAGAGAAGAGGATTCTGTTTTATCACATACACAGACGAAGAGCCAGTAAAGAAACTGTTA
GAAAGCAGATACCATCAGATAGGCTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGG
TGTACAGGCAGCAGCAGCAGCAACAGAAAGGTGGAAGAGGGGCTGCGGCTGGTGGAAGAGGTGG
TGCTAGGGGACGCGGAAGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGAT
CAAGGATATGGAAATTATAATAGTGCCTATGGTGATGAGAGCTATAGTGGCTATGGCGGCTATG
ACTATACGGGGTATAACTATGGGAGCTATGGATATGGACAGGGATATACAGACTACAGCGGTCA
GCAGAGCACTTATGGCAAGGCATCCCGAGGGGGTGGCAATCACCAGAACAATTACCAGCCCTAC
TAAAGGAGGACGCTGGGAGAGCAGGAGGTGTAAAGAAACCATCTTACAGGACGACATTGAAGGT
TGCTTGATCTTCTGTTGACCTAAGATGATTATTTTGTAAAGACTTTGTAGTGTACATGACACAA
TTGTGTCCCACTGTACATAGCTGCCAATTAGTTCCTTTGTTAATCTGTCCTTTGTTCCTTCCCT
GTGTTATGACTCAATGTGGATTTGTGTTTATACAAATTTTTATTTGTGTGACTTCATGTTCAAC
CTCAAATAAATGCTTCCTTATGTGATTGTTTTTCTGCGTCAGGTACTGCATAGTTCTGTGGAAA
TGTAATTTTATAAAGAAGCAATAACTTAAGGCGCAGCTTGTTTTGTAGGGGGTATTGGTCCACA
GAAGAGACTGCTCATGGTATCTCCTTGTCTCTGGTTTCTGTGGGTGTTATTCTGTACTTAAAGT
CTAATGCTTTTTCTCTGTTGATTCCTTCCACACCTTTGGAATAATGTTTCCCCCTGGGTATCTG
GAGACTGACACTAGTCTGTTTTGATTGGTGACACGTGGTGTGCTTTTGGATTATGGTTCTAAGG
GAAGCACCTTGCTGGGCTAGGCTGTACCTCACTGGCAAGTATTCTTTGCCGGAGCACAAATGAT
GCCCTTGTTTCTGTCCCTCACTGTTGAAATGAACCTGTTGGCTACCACAAAGCTTGTCAGTTGA
CTACCTTTGCTCTATGCCTATCTGACAAACCATGTGTAATTCACAGATGACTTTAAAGAGCTGG
TGGTTTGTCTGTTAGATCAGAGGTAAATGCAGAGGAAGAACGCTGTCCAACTGGTGCCCAGATC
ATCAGTTTCATCTGGGATTAGCCACTAAGTGGGTGCAGTGGGGTGAGTTTGTCCCACCACAGTA
CCTGAGCTAAACAGAACAGTTTGATATTGAGGCGGGGTGGGGGGGGCGAGTTGTGGAAAGTTAC
ATGGTGTGTATCTTGTGGTGCATTTAAAACTTTAAGGATTTAACAGTAATACAGGCTTTGGGTT
TTTTCGGGAAATGTTGGGCTTAGAGGTCTCCACGGTTCCACAAAAGCTTCTGGGTTTGGGGGGT
ATGTTTAGAGTGCCTGGTCTTAGACCAGTGTAAGCTTTTTATACTGATACCTTTTTTTAAATGC
CTACGACTTTGTTCCATGATATTTGTACTTGCTAGCAAGGCTGTCAAGTTACCATGCCTTGGCC
TGATTTTCCTCTGGCCTGGTACCAGTGTTGGCCATTAAAAAAGAACTGTTTGTTTCAACTTGCA
GCCAGAAAGTAGAAGGGAGATCATTTCACATTGTTAGTAGGTACAGTATCCAGAGAAAGATACC
TGTGAGTTCAAGCTTACAATTAGGTGACAAGTTGACATTGAGATTGTCATTTCCCCTGATCAAA
ATGAATAAAGTCTTTTTAAAA

hide sequence

RefSeq Acc Id:

XM_008770024 ⟹ XP_008768246

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI
Rnor_6.0	14	11,199,114 - 11,204,670 (+)	NCBI

Sequence:

show sequence

TGCTCCTCACCCGGAGCCCCGCGATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATT
GTTCCCCTCGGCTCCCGCTACTTTAGCCTCCCGCAGCCTTTCCCATTGGCGGCCGCGGGCTCCG
CGGCAGCTCGCCCCTCTCCTCCCTTCGCTCGCTTCCAGCTCTTCCCGGCAGGGGGCGCGCCGGA
CCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCAGCTATAAAGGGAGG
GCGCAGGCGGCGGCCGGATCTCTTCCGCCGCCATTTTAAATCTAGCTCCATACAACGCTCCGCC
GCCGCTGCCCCCGGGACCCGGACTGCGCGCCAGCACCCCCTTGCCGACGGCTCCGCCACCATGG
AGGACATGAATGAGTACAGCAACATAGAGGAGTTCGCAGAGGGATCCAAGATCAACGCGAGCAA
GAACCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGAT
CTGACTGAATATTTGTCTCGGTTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCA
CTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTGGATAAGGTTTT
GGAACTGAAGGAACACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAG
GGGAAAGAACCCCCTAAAAAGGTTTTTGTGGGTGGATTGAGTCCAGATACTTCAGAAGAACAAA
TTAAAGAATATTTTGGAGCCTTCGGAGAGATAGAAAACATTGAGCTGCCCATGGATACGAAGAC
TAATGAGAGAAGAGGATTCTGTTTTATCACATACACAGACGAAGAGCCAGTAAAGAAACTGTTA
GAAAGCAGATACCATCAGATAGGCTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGG
TGTACAGGCAGCAGCAGCAGCAACAGAAAGGTGGAAGAGGGGCTGCGGCTGGTGGAAGAGGTGG
TGCTAGGGGACGCGGAAGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGAT
CAAGGATATGGAAATTATAATAGTGCCTATGGTGATGAGAGCTATAGTGGCTATGGCGGCTATG
ACTATACGGGGTATAACTATGGGAGCTATGGATATGGACAGGGATATACAGACTACAGCGGTCA
GCAGAGCACTTATGGCAAGGCATCCCGAGGGGGTGGCAATCACCAGAACAATTACCAGCCCTAC
TAAAGGAGGACGCTGGGAGAGCAGGTGTGTGAGGCTACAGGAAAACATTGGCAATGGCTAATTT
AACTTAAAGATGAATAGACAAATGAACGATATGAGTAAACTATGTTGCGTAGTCCTTGCTAAAT
TGTTAATGTGTAATCGCTTTATAAGCCTGTTTTGCCTAAAGTGTCTATAGATCTTTAACTTTAA
GGTTTTACCTCACCTTTTTTAGAATTACAGAAAAACTTAAGAGTTTTTCTGTTTGCTTTGTGTA
CCAGGAGGTGTAGAGGAATAATTAAACTTTTTTAGAACTATTAACAGGTAAAGTACTGAAATGG
GTACAACTTAAGGAAAACCAGAATGTTGTCTTCTAACTCTGACATTATACCTTGTTTGTACCCG
CCAGCGGGAACTTCATTGCAGGCCGTGTGTCACCCTGACCACGTCTATCTCTGGGGGTCGCACG
TTGCGGGCAGAGCGCAAGGCATACACCAGAAAACGCTGTCCTGTGGTATGGTCTCTTCCAACTT
CATGTACCAGCGTAAAGATTAAAGTGGAAAACCAGACTTTGGCTGCTTTTTTAATCTTTTTGGA
GACTAAGTGTCTAAACTTAACTTAAATGGTTTTTTACAGGAGTTAAAGTACATAAATGCCTTTT
TACAGCTTAATCATTTTGGTCTTCTGTTTAGTGTTGTATTTCAATTGTGGAGCCTCATTTTAAG
TGTTCATTCTTTAAGATTTAATGCTTGCTTTTTCTTTTTATAGCTAATAGTGAAATCTACAAAC
CAAAACAAGAACTTTTAAATCTGGGATGTAAGTTAAAGATCATATGCACAAAGCAATTGGCTCT
CACTATGTGTCCTAACTATGGCAGCTGCCGGGAATTCATTGGTAGCACTCCAGTTGGCTCACCT
GATGCTTCTGGTTGGCCCTCACCTGTTAGACTCATAACAGGGAAGATTGCATTCCCATGTTCTA
AGTTGAATCCGTTCAGTGTCGTTGGAACTCCAGCGAGTTTCAATCCCCAAACTGTGCTTTGCTG
GTCACTATGCATGTGATCTTTAATTGAAGTGAGGACTTAAAGCAGTTCATGAAAGTGGACCTTT
TACAAGCTTGTGGGGACCGCACACATCTAATGGGTGTTTTGTTTTTGTTTTAGGAGGTGTAAAG
AAACCATCTTACAGGACGACATTGAAGGTTGCTTGATCTTCTGTTGACCTAAGATGATTATTTT
GTAAAGACTTTGTAGTGTACATGACACAATTGTGTCCCACTGTACATAGCTGCCAATTAGTTCC
TTTGTTAATCTGTCCTTTGTTCCTTCCCTGTGTTATGACTCAATGTGGATTTGTGTTTATACAA
ATTTTTATTTGTGTGACTTCATGTTCAACCTCAAATAAATGCTTCCTTATGTGATTGTTTTTCT
GCGTCAGGTACTGCATAGTTCTGTGGAAATGTAATTTTATAAAGAAGCAATAACTTAAGGCGCA
GCTTGTTTTGTAGGGGGTATTGGTCCACAGAAGAGACTGCTCATGGTATCTCCTTGTCTCTGGT
TTCTGTGGGTGTTATTCTGTACTTAAAGTCTAATGCTTTTTCTCTGTTGATTCCTTCCACACCT
TTGGAATAATGTTTCCCCCTGGGTATCTGGAGACTGACACTAGTCTGTTTTGATTGGTGACACG
TGGTGTGCTTTTGGATTATGGTTCTAAGGGAAGCACCTTGCTGGGCTAGGCTGTACCTCACTGG
CAAGTATTCTTTGCCGGAGCACAAATGATGCCCTTGTTTCTGTCCCTCACTGTTGAAATGAACC
TGTTGGCTACCACAAAGCTTGTCAGTTGACTACCTTTGCTCTATGCCTATCTGACAAACCATGT
GTAATTCACAGATGACTTTAAAGAGCTGGTGGTTTGTCTGTTAGATCAGAGGTAAATGCAGAGG
AAGAACGCTGTCCAACTGGTGCCCAGATCATCAGTTTCATCTGGGATTAGCCACTAAGTGGGTG
CAGTGGGGTGAGTTTGTCCCACCACAGTACCTGAGCTAAACAGAACAGTTTGATATTGAGGCGG
GGTGGGGGGGGCGAGTTGTGGAAAGTTACATGGTGTGTATCTTGTGGTGCATTTAAAACTTTAA
GGATTTAACAGTAATACAGGCTTTGGGTTTTTTCGGGAAATGTTGGGCTTAGAGGTCTCCACGG
TTCCACAAAAGCTTCTGGGTTTGGGGGGTATGTTTAGAGTGCCTGGTCTTAGACCAGTGTAAGC
TTTTTATACTGATACCTTTTTTTAAATGCCTACGACTTTGTTCCATGATATTTGTACTTGCTAG
CAAGGCTGTCAAGTTACCATGCCTTGGCCTGATTTTCCTCTGGCCTGGTACCAGTGTTGGCCAT
TAAAAAAGAACTGTTTGTTTCAACTTGCAGCCAGAAAGTAGAAGGGAGATCATTTCACATTGTT
AGTAGGTACAGTATCCAGAGAAAGATACCTGTGAGTTCAAGCTTACAATTAGGTGACAAGTTGA
CATTGAGATTGTCATTTCCCCTGATCAAAATGAATAAAGTCTTTTTAAAA

hide sequence

RefSeq Acc Id:

XM_039091837 ⟹ XP_038947765

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,374 - 9,563,654 (+)	NCBI

RefSeq Acc Id:

XM_039091838 ⟹ XP_038947766

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,374 - 9,563,654 (+)	NCBI

RefSeq Acc Id:

XR_005492930

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI

RefSeq Acc Id:

XR_359349

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI
Rnor_6.0	14	11,199,114 - 11,204,670 (+)	NCBI
Rnor_5.0	14	11,142,952 - 11,148,504 (+)	NCBI

Sequence:

show sequence

TGCTCCTCACCCGGAGCCCCGCGATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATT
GTTCCCCTCGGCTCCCGCTACTTTAGCCTCCCGCAGCCTTTCCCATTGGCGGCCGCGGGCTCCG
CGGCAGCTCGCCCCTCTCCTCCCTTCGCTCGCTTCCAGCTCTTCCCGGCAGGGGGCGCGCCGGA
CCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCAGCTATAAAGGGAGG
GCGCAGGCGGCGGCCGGATCTCTTCCGCCGCCATTTTAAATCTAGCTCCATACAACGCTCCGCC
GCCGCTGCCCCCGGGACCCGGACTGCGCGCCAGCACCCCCTTGCCGACGGCTCCGCCACCATGG
AGGACATGAATGAGTACAGCAACATAGAGGAGTTCGCAGAGGGATCCAAGATCAACGCGAGCAA
GAACCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGAT
CTGACTGAATATTTGTCTCGGTTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCA
CTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTGGATAAGGTTTT
GGAACTGAAGGAACACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAG
GGGAAAGAACCCCCTAAAAAGGTTTTTGTGGGTGGATTGAGTCCAGATACTTCAGAAGAACAAA
TTAAAGAATATTTTGGAGCCTTCGGAGAGATAGAAAACATTGAGCTGCCCATGGATACGAAGAC
TAATGAGAGAAGAGGATTCTGTTTTATCACATACACAGACGAAGAGCCAGTAAAGAAACTGTTA
GAAAGCAGATACCATCAGATAGGCTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGG
TGTACAGGCAGCAGCAGCAGCAACAGAAAGGTGGAAGAGGGGCTGCGGCTGGTGGAAGAGGTGG
TGCTAGGGGACGCGGAAGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGAT
CAAGGATATGGAAATTATAATAGTGCCTATGGTGATGAGAGCTATAGTGGCTATGGCGGCTATG
ACTATACGGGGTATAACTATGGGAGCTATGGATATGGACAGGGATATACAGACTACAGCGGTCA
GCAGAGCACTTATGGCAAGGCATCCCGAGGGGGTGGCAATCACCAGAACAATTACCAGCCCTAC
TAAAGGAGGACGCTGGGAGAGCAGGTGTGTGAGGCTACAGGAAAACATTGGCAATGGCTAATTT
AACTTAAAGATGAATAGACAAATGAACGATATGAGTAAACTATGTTGCGTAGTCCTTGCTAAAT
TGTTAATGTGTAATCGCTTTATAAGCCTGTTTTGCCTAAAGTGTCTATAGATCTTTAACTTTAA
GGTTTTACCTCACCTTTTTTAGAATTACAGAAAAACTTAAGAGTTTTTCTGTTTGCTTTGTGTA
CCAGGAGGTGTAGAGGAATAATTAAACTTTTTTAGAACTATTAACAGGTAAAGTACTGAAATGG
GTACAACTTAAGGAAAACCAGAATGTTGTCTTCTAACTCTGACATTATACCTTGTTTGTACCCG
CCAGCGGGAACTTCATTGCAGGCCGTGTGTCACCCTGACCACGTCTATCTCTGGGGGTCGCACG
TTGCGGGCAGAGCGCAAGGCATACACCAGAAAACGCTGTCCTGTGGAGGTGTAAAGAAACCATC
TTACAGGACGACATTGAAGGTTGCTTGATCTTCTGTTGACCTAAGATGATTATTTTGTAAAGAC
TTTGTAGTGTACATGACACAATTGTGTCCCACTGTACATAGCTGCCAATTAGTTCCTTTGTTAA
TCTGTCCTTTGTTCCTTCCCTGTGTTATGACTCAATGTGGATTTGTGTTTATACAAATTTTTAT
TTGTGTGACTTCATGTTCAACCTCAAATAAATGCTTCCTTATGTGATTGTTTTTCTGCGTCAGG
TACTGCATAGTTCTGTGGAAATGTAATTTTATAAAGAAGCAATAACTTAAGGCGCAGCTTGTTT
TGTAGGGGGTATTGGTCCACAGAAGAGACTGCTCATGGTATCTCCTTGTCTCTGGTTTCTGTGG
GTGTTATTCTGTACTTAAAGTCTAATGCTTTTTCTCTGTTGATTCCTTCCACACCTTTGGAATA
ATGTTTCCCCCTGGGTATCTGGAGACTGACACTAGTCTGTTTTGATTGGTGACACGTGGTGTGC
TTTTGGATTATGGTTCTAAGGGAAGCACCTTGCTGGGCTAGGCTGTACCTCACTGGCAAGTATT
CTTTGCCGGAGCACAAATGATGCCCTTGTTTCTGTCCCTCACTGTTGAAATGAACCTGTTGGCT
ACCACAAAGCTTGTCAGTTGACTACCTTTGCTCTATGCCTATCTGACAAACCATGTGTAATTCA
CAGATGACTTTAAAGAGCTGGTGGTTTGTCTGTTAGATCAGAGGTAAATGCAGAGGAAGAACGC
TGTCCAACTGGTGCCCAGATCATCAGTTTCATCTGGGATTAGCCACTAAGTGGGTGCAGTGGGG
TGAGTTTGTCCCACCACAGTACCTGAGCTAAACAGAACAGTTTGATATTGAGGCGGGGTGGGGG
GGGCGAGTTGTGGAAAGTTACATGGTGTGTATCTTGTGGTGCATTTAAAACTTTAAGGATTTAA
CAGTAATACAGGCTTTGGGTTTTTTCGGGAAATGTTGGGCTTAGAGGTCTCCACGGTTCCACAA
AAGCTTCTGGGTTTGGGGGGTATGTTTAGAGTGCCTGGTCTTAGACCAGTGTAAGCTTTTTATA
CTGATACCTTTTTTTAAATGCCTACGACTTTGTTCCATGATATTTGTACTTGCTAGCAAGGCTG
TCAAGTTACCATGCCTTGGCCTGATTTTCCTCTGGCCTGGTACCAGTGTTGGCCATTAAAAAAG
AACTGTTTGTTTCAACTTGCAGCCAGAAAGTAGAAGGGAGATCATTTCACATTGTTAGTAGGTA
CAGTATCCAGAGAAAGATACCTGTGAGTTCAAGCTTACAATTAGGTGACAAGTTGACATTGAGA
TTGTCATTTCCCCTGATCAAAATGAATAAAGTCTTTTTAAAA

hide sequence

RefSeq Acc Id:

XR_359350

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	9,558,079 - 9,563,654 (+)	NCBI
Rnor_6.0	14	11,199,114 - 11,204,670 (+)	NCBI
Rnor_5.0	14	11,142,952 - 11,148,504 (+)	NCBI

Sequence:

show sequence

TGCTCCTCACCCGGAGCCCCGCGATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATT
GTTCCCCTCGGCTCCCGCTACTTTAGCCTCCCGCAGCCTTTCCCATTGGCGGCCGCGGGCTCCG
CGGCAGCTCGCCCCTCTCCTCCCTTCGCTCGCTTCCAGCTCTTCCCGGCAGGGGGCGCGCCGGA
CCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCAGCTATAAAGGGAGG
GCGCAGGCGGCGGCCGGATCTCTTCCGCCGCCATTTTAAATCTAGCTCCATACAACGCTCCGCC
GCCGCTGCCCCCGGGACCCGGACTGCGCGCCAGCACCCCCTTGCCGACGGCTCCGCCACCATGG
AGGACATGAATGAGTACAGCAACATAGAGGAGTTCGCAGAGGGATCCAAGATCAACGCGAGCAA
GAACCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGAT
CTGACTGAATATTTGTCTCGGTTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCA
CTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTGGATAAGGTTTT
GGAACTGAAGGAACACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAG
GGGAAAGAACCCCCTAAAAAGGTTTTTGTGGGTGGATTGAGTCCAGATACTTCAGAAGAACAAA
TTAAAGAATATTTTGGAGCCTTCGGAGAGATAGAAAACATTGAGCTGCCCATGGATACGAAGAC
TAATGAGAGAAGAGGATTCTGTTTTATCACATACACAGACGAAGAGCCAGTAAAGAAACTGTTA
GAAAGCAGATACCATCAGATAGGCTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGG
TGTACAGGCAGCAGCAGCAGCAACAGAAAGGTGGAAGAGGGGCTGCGGCTGGTGGAAGAGGTGG
TGCTAGGGGACGCGGAAGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGAT
CAAGGATATGGAAATTATAATAGTGCCTATGGTGATGAGAGCTATAGTGGCTATGGCGGCTATG
ACTATACGGGGTATAACTATGGGAGCTATGGATATGGACAGGGATATACAGACTACAGCGGTCA
GCAGAGCACTTATGGCAAGGCATCCCGAGGGGGTGGCAATCACCAGAACAATTACCAGCCCTAC
TAAAGGAGGACGCTGGGAGAGCAGCGGGAACTTCATTGCAGGCCGTGTGTCACCCTGACCACGT
CTATCTCTGGGGGTCGCACGTTGCGGGCAGAGCGCAAGGCATACACCAGAAAACGCTGTCCTGT
GGAGGTGTAAAGAAACCATCTTACAGGACGACATTGAAGGTTGCTTGATCTTCTGTTGACCTAA
GATGATTATTTTGTAAAGACTTTGTAGTGTACATGACACAATTGTGTCCCACTGTACATAGCTG
CCAATTAGTTCCTTTGTTAATCTGTCCTTTGTTCCTTCCCTGTGTTATGACTCAATGTGGATTT
GTGTTTATACAAATTTTTATTTGTGTGACTTCATGTTCAACCTCAAATAAATGCTTCCTTATGT
GATTGTTTTTCTGCGTCAGGTACTGCATAGTTCTGTGGAAATGTAATTTTATAAAGAAGCAATA
ACTTAAGGCGCAGCTTGTTTTGTAGGGGGTATTGGTCCACAGAAGAGACTGCTCATGGTATCTC
CTTGTCTCTGGTTTCTGTGGGTGTTATTCTGTACTTAAAGTCTAATGCTTTTTCTCTGTTGATT
CCTTCCACACCTTTGGAATAATGTTTCCCCCTGGGTATCTGGAGACTGACACTAGTCTGTTTTG
ATTGGTGACACGTGGTGTGCTTTTGGATTATGGTTCTAAGGGAAGCACCTTGCTGGGCTAGGCT
GTACCTCACTGGCAAGTATTCTTTGCCGGAGCACAAATGATGCCCTTGTTTCTGTCCCTCACTG
TTGAAATGAACCTGTTGGCTACCACAAAGCTTGTCAGTTGACTACCTTTGCTCTATGCCTATCT
GACAAACCATGTGTAATTCACAGATGACTTTAAAGAGCTGGTGGTTTGTCTGTTAGATCAGAGG
TAAATGCAGAGGAAGAACGCTGTCCAACTGGTGCCCAGATCATCAGTTTCATCTGGGATTAGCC
ACTAAGTGGGTGCAGTGGGGTGAGTTTGTCCCACCACAGTACCTGAGCTAAACAGAACAGTTTG
ATATTGAGGCGGGGTGGGGGGGGCGAGTTGTGGAAAGTTACATGGTGTGTATCTTGTGGTGCAT
TTAAAACTTTAAGGATTTAACAGTAATACAGGCTTTGGGTTTTTTCGGGAAATGTTGGGCTTAG
AGGTCTCCACGGTTCCACAAAAGCTTCTGGGTTTGGGGGGTATGTTTAGAGTGCCTGGTCTTAG
ACCAGTGTAAGCTTTTTATACTGATACCTTTTTTTAAATGCCTACGACTTTGTTCCATGATATT
TGTACTTGCTAGCAAGGCTGTCAAGTTACCATGCCTTGGCCTGATTTTCCTCTGGCCTGGTACC
AGTGTTGGCCATTAAAAAAGAACTGTTTGTTTCAACTTGCAGCCAGAAAGTAGAAGGGAGATCA
TTTCACATTGTTAGTAGGTACAGTATCCAGAGAAAGATACCTGTGAGTTCAAGCTTACAATTAG
GTGACAAGTTGACATTGAGATTGTCATTTCCCCTGATCAAAATGAATAAAGTCTTTTTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028868	(Get FASTA)	NCBI Sequence Viewer
	XP_006250724	(Get FASTA)	NCBI Sequence Viewer
	XP_006250725	(Get FASTA)	NCBI Sequence Viewer
	XP_008768246	(Get FASTA)	NCBI Sequence Viewer
	XP_038947765	(Get FASTA)	NCBI Sequence Viewer
	XP_038947766	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04684	(Get FASTA)	NCBI Sequence Viewer
	EDL99586	(Get FASTA)	NCBI Sequence Viewer
	EDL99587	(Get FASTA)	NCBI Sequence Viewer
	EDL99588	(Get FASTA)	NCBI Sequence Viewer
	EDL99589	(Get FASTA)	NCBI Sequence Viewer
	Q3SWU3	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001028868 ⟸ NM_001033696

- UniProtKB:

Q3SWU3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTGTARSALPLPQSPARALRPSGAARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSK
KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKA
LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK
LLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNY
YDQGYGNYNSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGGGNHQNNYQ
PY

hide sequence

RefSeq Acc Id:	XP_006250724 ⟸ XM_006250662
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRAPRQLAPLLPSLASSSSRQGARRTQRHVTAQ QPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAPGTRTARQHPLADGSATMEDMNEYSN IEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ QKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGDESYSGYGGYDYTGYNYG SYGYGQGYTDYSGQQSTYGKASRGGGNHQNNYQPY hide sequence

RefSeq Acc Id:	XP_006250725 ⟸ XM_006250663
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRAPRQLAPLLPSLASSSSRQGARRTQRHVTAQ QPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAPGTRTARQHPLADGSATMEDMNEYSN IEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ QKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGDESYSGYGGYDYTGYNYG SYGYGQGYTDYSGQQSTYGKASRGGGNHQNNYQPY hide sequence

RefSeq Acc Id:	XP_008768246 ⟸ XM_008770024
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRAPRQLAPLLPSLASSSSRQGARRTQRHVTAQ QPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAPGTRTARQHPLADGSATMEDMNEYSN IEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ QKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGDESYSGYGGYDYTGYNYG SYGYGQGYTDYSGQQSTYGKASRGGGNHQNNYQPY hide sequence

RefSeq Acc Id:

ENSRNOP00000075589 ⟸ ENSRNOT00000079767

RefSeq Acc Id:

ENSRNOP00000003106 ⟸ ENSRNOT00000003106

RefSeq Acc Id:	XP_038947765 ⟸ XM_039091837
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038947766 ⟸ XM_039091838
- Peptide Label:	isoform X2

Protein Domains

RRM

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699198

Promoter ID:

EPDNEW_R9722

Type:

single initiation site

Name:

Hnrnpdl_1

Description:

heterogeneous nuclear ribonucleoprotein D-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	11,199,389 - 11,199,449	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
14	11144925	11144926	C	T	snv	Crl:SD (UDEL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309950	AgrOrtholog
Ensembl Genes	ENSRNOG00000002270	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000003106	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000075589	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003106	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000079767	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7461444	IMAGE-MGC_LOAD
InterPro	hnRPDL_RRM1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:305178	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125262	IMAGE-MGC_LOAD
NCBI Gene	305178	ENTREZGENE
Pfam	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hnrnpdl	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2KAZ7	ENTREZGENE, UniProtKB/TrEMBL
	HNRDL_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-01	Hnrnpdl	heterogeneous nuclear ribonucleoprotein D-like	Hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	Hnrpdl_predicted	heterogeneous nuclear ribonucleoprotein D-like (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Hnrpdl_predicted	heterogeneous nuclear ribonucleoprotein D-like (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM