Anxa11 (annexin A11) - Rat Genome Database

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Gene: Anxa11 (annexin A11) Rattus norvegicus
Analyze
Symbol: Anxa11
Name: annexin A11
RGD ID: 1309911
Description: Predicted to enable several functions, including S100 protein binding activity; calcium-dependent protein binding activity; and phospholipid binding activity. Predicted to be involved in cytokinetic process; phagocytosis; and response to calcium ion. Predicted to be located in several cellular components, including cytoplasmic vesicle; midbody; and nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 23. Orthologous to human ANXA11 (annexin A11); INTERACTS WITH 2,6-dinitrotoluene; 6-propyl-2-thiouracil; azoxystrobin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC290527
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2161,412,373 - 1,457,814 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,410,756 - 1,457,797 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,419,261 - 1,464,112 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0162,565,107 - 2,609,952 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0161,425,873 - 1,470,708 (+)NCBIRnor_WKY
Rnor_6.0163,867,193 - 3,912,043 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,867,208 - 3,912,148 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,833,103 - 3,878,044 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,449,907 - 1,496,053 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,449,906 - 1,496,051 (+)NCBI
Celera161,390,640 - 1,433,964 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
imidacloprid  (EXP)
indometacin  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lithium chloride  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
permethrin  (EXP)
phenol red  (ISO)
phenylmercury acetate  (ISO)
propanal  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
thiabendazole  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:7508441   PMID:9188810   PMID:11883939   PMID:12445460   PMID:12477932   PMID:12577318   PMID:12601007   PMID:12689336   PMID:12805373   PMID:15197175   PMID:16127703   PMID:19056867  
PMID:19724273   PMID:19946888   PMID:20458337   PMID:22681889   PMID:23376485   PMID:23533145   PMID:32344647  


Genomics

Comparative Map Data
Anxa11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2161,412,373 - 1,457,814 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,410,756 - 1,457,797 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,419,261 - 1,464,112 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0162,565,107 - 2,609,952 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0161,425,873 - 1,470,708 (+)NCBIRnor_WKY
Rnor_6.0163,867,193 - 3,912,043 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,867,208 - 3,912,148 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,833,103 - 3,878,044 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,449,907 - 1,496,053 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,449,906 - 1,496,051 (+)NCBI
Celera161,390,640 - 1,433,964 (+)NCBICelera
Cytogenetic Map16p16NCBI
ANXA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381080,150,889 - 80,205,808 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1080,150,889 - 80,205,572 (-)EnsemblGRCh38hg38GRCh38
GRCh371081,910,645 - 81,965,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361081,904,860 - 81,955,308 (-)NCBINCBI36Build 36hg18NCBI36
Build 341081,904,859 - 81,955,308NCBI
Celera1075,905,819 - 75,956,262 (-)NCBICelera
Cytogenetic Map10q22.3NCBI
HuRef1075,758,329 - 75,808,818 (-)NCBIHuRef
CHM1_11082,197,836 - 82,248,391 (-)NCBICHM1_1
T2T-CHM13v2.01081,020,012 - 81,074,920 (-)NCBIT2T-CHM13v2.0
Anxa11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391425,842,575 - 25,887,228 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1425,842,580 - 25,887,228 (+)EnsemblGRCm39 Ensembl
GRCm381425,842,127 - 25,886,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1425,842,156 - 25,886,804 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1426,016,431 - 26,025,837 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1426,156,036 - 26,163,648 (+)EnsemblGRCm38mm10GRCm38
MGSCv371426,661,641 - 26,706,290 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361424,675,354 - 24,719,982 (+)NCBIMGSCv36mm8
Celera1422,159,813 - 22,204,193 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1415.06NCBI
Anxa11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543713,119,782 - 13,161,536 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543713,119,782 - 13,161,196 (-)NCBIChiLan1.0ChiLan1.0
ANXA11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11078,724,086 - 78,775,034 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1078,724,086 - 78,775,037 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01076,065,939 - 76,116,400 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ANXA11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1429,250,164 - 29,266,713 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl429,224,247 - 29,266,008 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha429,350,368 - 29,390,213 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,527,662 - 29,567,504 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1429,397,682 - 29,437,457 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0429,600,086 - 29,639,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0429,954,194 - 29,994,048 (+)NCBIUU_Cfam_GSD_1.0
Anxa11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,738,569 - 51,782,296 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936521231,294 - 275,138 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANXA11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1481,835,194 - 81,879,372 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11481,835,205 - 81,879,565 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,448,390 - 88,490,746 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANXA11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1951,608,886 - 51,655,514 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl951,608,938 - 51,656,225 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604811,949,393 - 11,996,183 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anxa11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475412,463,864 - 12,507,185 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475412,463,883 - 12,506,604 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH128674  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,457,565 - 1,457,750 (-)MAPPERmRatBN7.2
Rnor_6.0163,867,257 - 3,867,441NCBIRnor6.0
Rnor_5.0163,833,167 - 3,833,351UniSTSRnor5.0
RGSC_v3.4161,495,820 - 1,496,004UniSTSRGSC3.4
Celera161,433,731 - 1,433,915UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH143467  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,436,542 - 1,436,651 (-)MAPPERmRatBN7.2
Rnor_6.0163,888,355 - 3,888,463NCBIRnor6.0
Rnor_5.0163,854,265 - 3,854,373UniSTSRnor5.0
RGSC_v3.4161,474,798 - 1,474,906UniSTSRGSC3.4
Celera161,412,709 - 1,412,817UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH143925  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,412,515 - 1,412,632 (-)MAPPERmRatBN7.2
Rnor_6.0163,912,362 - 3,912,478NCBIRnor6.0
Rnor_5.0163,878,272 - 3,878,388UniSTSRnor5.0
RGSC_v3.4161,449,472 - 1,449,588UniSTSRGSC3.4
Celera161,390,205 - 1,390,321UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
STS-AA018252  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0163,852,036 - 3,853,472NCBIRnor5.0
RGSC_v3.4161,475,699 - 1,477,134UniSTSRGSC3.4
Celera161,413,610 - 1,415,045UniSTS
Cytogenetic Map16p16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:380
Count of miRNA genes:210
Interacting mature miRNAs:238
Transcripts:ENSRNOT00000014941
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 38 35 41 11 8
Low 36
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014941   ⟹   ENSRNOP00000014940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,410,756 - 1,457,797 (+)Ensembl
Rnor_6.0 Ensembl163,867,208 - 3,912,148 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106567   ⟹   ENSRNOP00000087377
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,412,851 - 1,451,094 (+)Ensembl
RefSeq Acc Id: NM_001011918   ⟹   NP_001011918
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,412,951 - 1,457,799 (+)NCBI
Rnor_6.0163,867,208 - 3,912,043 (-)NCBI
Rnor_5.0163,833,103 - 3,878,044 (-)NCBI
RGSC_v3.4161,449,907 - 1,496,053 (+)RGD
Celera161,390,640 - 1,433,964 (+)RGD
Sequence:
RefSeq Acc Id: XM_017600010   ⟹   XP_017455499
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,428,535 - 1,457,814 (+)NCBI
Rnor_6.0163,867,193 - 3,896,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094245   ⟹   XP_038950173
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,412,373 - 1,447,807 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001011918 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455499 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950173 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83812 (Get FASTA)   NCBI Sequence Viewer  
  EDL75087 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001011918   ⟸   NM_001011918
- UniProtKB: Q5XI77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455499   ⟸   XM_017600010
- Peptide Label: isoform X1
- UniProtKB: Q5XI77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000014940   ⟸   ENSRNOT00000014941
RefSeq Acc Id: XP_038950173   ⟸   XM_039094245
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000087377   ⟸   ENSRNOT00000106567

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI77-F1-model_v2 AlphaFold Q5XI77 1-503 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699905
Promoter ID:EPDNEW_R10429
Type:initiation region
Name:Anxa11_1
Description:annexin A11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0163,912,070 - 3,912,130EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 3878041 3878042 C T snv SBH/Ygl (RGD), SBH/Ygl (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 3843951 3843952 C T snv SBH/Ygl (KNAW), SBH/Ygl (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 1485220 1485221 G A snv SBH/Ygl (ICL)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309911 AgrOrtholog
BioCyc Gene G2FUF-12265 BioCyc
Ensembl Genes ENSRNOG00000010984 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014940 ENTREZGENE
  ENSRNOP00000014940.5 UniProtKB/TrEMBL
  ENSRNOP00000087377.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014941 ENTREZGENE
  ENSRNOT00000014941.7 UniProtKB/TrEMBL
  ENSRNOT00000106567.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110191 IMAGE-MGC_LOAD
InterPro Annexin UniProtKB/TrEMBL
  Annexin_repeat UniProtKB/TrEMBL
  Annexin_repeat_CS UniProtKB/TrEMBL
  Annexin_sf UniProtKB/TrEMBL
  AnnexinXI_N UniProtKB/TrEMBL
KEGG Report rno:290527 UniProtKB/TrEMBL
MGC_CLONE MGC:94870 IMAGE-MGC_LOAD
NCBI Gene 290527 ENTREZGENE
PANTHER PTHR10502:SF29 UniProtKB/TrEMBL
Pfam Annexin UniProtKB/TrEMBL
PhenoGen Anxa11 PhenoGen
PRINTS ANNEXIN UniProtKB/TrEMBL
  ANNEXINXI UniProtKB/TrEMBL
PROSITE ANNEXIN UniProtKB/TrEMBL
  ANNEXIN_2 UniProtKB/TrEMBL
SMART ANX UniProtKB/TrEMBL
Superfamily-SCOP SSF47874 UniProtKB/TrEMBL
UniProt A0A8I6A5R0_RAT UniProtKB/TrEMBL
  F7FLB7_RAT UniProtKB/TrEMBL
  Q5XI77 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Anxa11  annexin A11  Anxa11_predicted  annexin A11 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Anxa11_predicted  annexin A11 (predicted)      Symbol and Name status set to approved 70820 APPROVED