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Gene: Trim16 (tripartite motif-containing 16) Rattus norvegicus
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Symbol: Trim16
Name: tripartite motif-containing 16
Description: Predicted to have DNA binding activity; NACHT domain binding activity; and interleukin-1 binding activity. Predicted to be involved in several processes, including histone acetylation; positive regulation of interleukin-1 beta secretion; and positive regulation of retinoic acid receptor signaling pathway. Predicted to localize to the PML body; cytosol; and plasma membrane. Orthologous to several human genes including TRIM16 (tripartite motif containing 16); INTERACTS WITH acrylamide; aflatoxin B1; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC303214; MGC93671; tripartite motif protein 16; tripartite motif-containing protein 16
Orthologs:
Homo sapiens (human) : TRIM16 (tripartite motif containing 16)  HGNC  Alliance
Mus musculus (house mouse) : Trim16 (tripartite motif-containing 16)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim16 (tripartite motif containing 16)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM16 (tripartite motif containing 16)
Canis lupus familiaris (dog) : TRIM16 (tripartite motif containing 16)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim16 (tripartite motif containing 16)
Sus scrofa (pig) : TRIM16 (tripartite motif containing 16)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01049,231,660 - 49,254,653 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1049,231,730 - 49,254,621 (+)Ensembl
Rnor_5.01049,011,305 - 49,033,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,987,004 - 49,009,696 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11049,000,664 - 49,021,215 (+)NCBI
Celera1046,731,462 - 46,754,204 (+)NCBICelera
Cytogenetic Map10q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Candidate Gene Status
Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Trim16
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309749
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.