Abhd14a (abhydrolase domain containing 14A) - Rat Genome Database

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Gene: Abhd14a (abhydrolase domain containing 14A) Rattus norvegicus
Analyze
Symbol: Abhd14a
Name: abhydrolase domain containing 14A
RGD ID: 1309721
Description: Predicted to enable hydrolase activity. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human ABHD14A (abhydrolase domain containing 14A); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: abhydrolase domain-containing protein 14A; alpha/beta hydrolase domain-containing protein 14A; Dorz1; down-regulated in Zic1 deficient cerebellar primordium; LOC300982; MGC95137; RGD1309721; similar to Dorz1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28107,079,139 - 107,089,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,079,144 - 107,086,985 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,702,116 - 112,709,957 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08110,901,292 - 110,909,133 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08108,744,072 - 108,751,915 (-)NCBIRnor_WKY
Rnor_6.08115,141,575 - 115,151,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,141,539 - 115,149,527 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,505,672 - 114,515,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,583,674 - 111,591,234 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18111,603,128 - 111,610,689 (-)NCBI
Celera8106,391,086 - 106,398,937 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14667578   PMID:15489334   PMID:23376485  


Genomics

Comparative Map Data
Abhd14a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28107,079,139 - 107,089,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,079,144 - 107,086,985 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,702,116 - 112,709,957 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08110,901,292 - 110,909,133 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08108,744,072 - 108,751,915 (-)NCBIRnor_WKY
Rnor_6.08115,141,575 - 115,151,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,141,539 - 115,149,527 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,505,672 - 114,515,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,583,674 - 111,591,234 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18111,603,128 - 111,610,689 (-)NCBI
Celera8106,391,086 - 106,398,937 (-)NCBICelera
Cytogenetic Map8q32NCBI
ABHD14A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,975,064 - 51,981,196 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl351,971,426 - 51,981,196 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,009,080 - 52,015,212 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,984,124 - 51,990,252 (+)NCBINCBI36Build 36hg18NCBI36
Celera351,988,316 - 51,994,490 (+)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,072,381 - 52,078,555 (+)NCBIHuRef
CHM1_1351,961,647 - 51,967,821 (+)NCBICHM1_1
T2T-CHM13v2.0352,007,983 - 52,014,115 (+)NCBIT2T-CHM13v2.0
Abhd14a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,317,250 - 106,328,402 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,317,250 - 106,324,877 (-)EnsemblGRCm39 Ensembl
GRCm389106,440,051 - 106,451,203 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,440,051 - 106,447,678 (-)EnsemblGRCm38mm10GRCm38
MGSCv379106,342,382 - 106,350,009 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,298,160 - 106,305,737 (-)NCBIMGSCv36mm8
Celera9106,067,433 - 106,074,853 (-)NCBICelera
Cytogenetic Map9F1NCBI
Abhd14a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,621,973 - 3,624,630 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,612,440 - 3,624,797 (+)NCBIChiLan1.0ChiLan1.0
ABHD14A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1353,143,401 - 53,150,962 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,144,802 - 53,158,941 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0351,915,031 - 51,922,653 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ABHD14A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,738,500 - 37,744,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,719,990 - 37,724,788 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,089,086 - 38,093,885 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12037,452,701 - 37,457,500 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,861,465 - 37,866,264 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,146,327 - 38,151,127 (-)NCBIUU_Cfam_GSD_1.0
Abhd14a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,560,619 - 66,566,437 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365293,321,129 - 3,326,928 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD14A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,104,425 - 34,111,941 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,104,359 - 34,111,953 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,300,540 - 37,308,301 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABHD14A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,342,950 - 13,350,539 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,344,474 - 13,351,053 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,556,350 - 153,563,874 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abhd14a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,792,302 - 5,797,724 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247305,791,302 - 5,797,726 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH130352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,079,168 - 107,079,372 (+)MAPPERmRatBN7.2
Rnor_6.08115,141,605 - 115,141,808NCBIRnor6.0
Rnor_5.08114,505,702 - 114,505,905UniSTSRnor5.0
RGSC_v3.48111,583,699 - 111,583,902UniSTSRGSC3.4
Celera8106,391,111 - 106,391,314UniSTS
RH 3.4 Map81140.1UniSTS
Cytogenetic Map8q32UniSTS
RH134272  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,083,117 - 107,083,314 (+)MAPPERmRatBN7.2
Rnor_6.08115,145,552 - 115,145,748NCBIRnor6.0
Rnor_5.08114,509,649 - 114,509,845UniSTSRnor5.0
RGSC_v3.48111,587,367 - 111,587,563UniSTSRGSC3.4
Celera8106,395,070 - 106,395,266UniSTS
RH 3.4 Map81139.0UniSTS
Cytogenetic Map8q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:117
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000016056
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 14 29 21 2
Low 3 43 55 41 19 41 8 11 60 6 20 9 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016056   ⟹   ENSRNOP00000016056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8107,079,144 - 107,086,985 (-)Ensembl
Rnor_6.0 Ensembl8115,141,580 - 115,149,419 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077514   ⟹   ENSRNOP00000073526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8115,141,539 - 115,149,527 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079470   ⟹   ENSRNOP00000074244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8115,141,744 - 115,145,810 (-)Ensembl
RefSeq Acc Id: NM_001009670   ⟹   NP_001009670
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,144 - 107,086,985 (-)NCBI
Rnor_6.08115,141,580 - 115,149,419 (-)NCBI
Rnor_5.08114,505,672 - 114,515,316 (-)NCBI
RGSC_v3.48111,583,674 - 111,591,234 (-)RGD
Celera8106,391,086 - 106,398,937 (-)RGD
Sequence:
RefSeq Acc Id: XM_006243717   ⟹   XP_006243779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,139 - 107,087,125 (-)NCBI
Rnor_6.08115,141,575 - 115,149,510 (-)NCBI
Rnor_5.08114,505,672 - 114,515,316 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766494   ⟹   XP_008764716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,139 - 107,089,004 (-)NCBI
Rnor_6.08115,141,575 - 115,151,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766498   ⟹   XP_008764720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,139 - 107,087,124 (-)NCBI
Rnor_6.08115,141,575 - 115,149,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766499   ⟹   XP_008764721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,139 - 107,087,125 (-)NCBI
Rnor_6.08115,141,575 - 115,149,510 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081205   ⟹   XP_038937133
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,139 - 107,085,390 (-)NCBI
RefSeq Acc Id: XM_039081206   ⟹   XP_038937134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,139 - 107,085,367 (-)NCBI
RefSeq Acc Id: XM_039081207   ⟹   XP_038937135
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,079,139 - 107,086,950 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001009670   ⟸   NM_001009670
- Peptide Label: precursor
- UniProtKB: Q5I0C4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243779   ⟸   XM_006243717
- Peptide Label: isoform X1
- UniProtKB: Q5I0C4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764716   ⟸   XM_008766494
- Peptide Label: isoform X1
- UniProtKB: Q5I0C4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764720   ⟸   XM_008766498
- Peptide Label: isoform X1
- UniProtKB: Q5I0C4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764721   ⟸   XM_008766499
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000074244   ⟸   ENSRNOT00000079470
RefSeq Acc Id: ENSRNOP00000016056   ⟸   ENSRNOT00000016056
RefSeq Acc Id: ENSRNOP00000073526   ⟸   ENSRNOT00000077514
RefSeq Acc Id: XP_038937135   ⟸   XM_039081207
- Peptide Label: isoform X1
- UniProtKB: Q5I0C4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038937133   ⟸   XM_039081205
- Peptide Label: isoform X1
- UniProtKB: Q5I0C4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038937134   ⟸   XM_039081206
- Peptide Label: isoform X1
- UniProtKB: Q5I0C4 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0C4-F1-model_v2 AlphaFold Q5I0C4 1-242 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696250
Promoter ID:EPDNEW_R6774
Type:single initiation site
Name:Abhd14a_2
Description:abhydrolase domain containing 14A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6775  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08115,149,426 - 115,149,486EPDNEW
RGD ID:13696261
Promoter ID:EPDNEW_R6775
Type:initiation region
Name:Abhd14a_1
Description:abhydrolase domain containing 14A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6774  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08115,149,545 - 115,149,605EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309721 AgrOrtholog
BioCyc Gene G2FUF-29238 BioCyc
Ensembl Genes ENSRNOG00000011936 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016056 ENTREZGENE
  ENSRNOP00000016056.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016056 ENTREZGENE
  ENSRNOT00000016056.7 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7128506 IMAGE-MGC_LOAD
InterPro AB_hydrolase UniProtKB/Swiss-Prot
  AB_hydrolase_1 UniProtKB/Swiss-Prot
KEGG Report rno:300982 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95137 IMAGE-MGC_LOAD
NCBI Gene 300982 ENTREZGENE
Pfam Abhydrolase_6 UniProtKB/Swiss-Prot
PhenoGen Abhd14a PhenoGen
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot
UniProt A0A8L2Q7K3_RAT UniProtKB/TrEMBL
  ABHEA_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Abhd14a  abhydrolase domain containing 14A  RGD1309721  similar to Dorz1  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1309721  similar to Dorz1  RGD1309721_predicted  similar to Dorz1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309721_predicted  similar to Dorz1 (predicted)  LOC300982_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC300982_predicted  similar to Dorz1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL