Depdc7 (DEP domain containing 7) - Rat Genome Database

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Gene: Depdc7 (DEP domain containing 7) Rattus norvegicus
Analyze
Symbol: Depdc7
Name: DEP domain containing 7
RGD ID: 1309720
Description: Predicted to be involved in intracellular signal transduction. Orthologous to human DEPDC7 (DEP domain containing 7); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DEP domain-containing protein 7; LOC295971; MGC114389; RGD1309720; similar to Hypothetical protein MGC19163
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83111,554,701 - 111,575,979 (-)NCBIGRCr8
mRatBN7.2391,099,111 - 91,121,152 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl391,099,835 - 91,121,124 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx394,593,936 - 94,615,320 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03103,193,004 - 103,214,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03101,023,067 - 101,044,339 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,665,714 - 94,687,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,665,717 - 94,686,989 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03101,290,424 - 101,311,721 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4390,054,620 - 90,075,902 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1389,951,047 - 89,972,330 (-)NCBI
Celera390,159,018 - 90,180,296 (-)NCBICelera
Cytogenetic Map3q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
cannabidiol  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dicrotophos  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
flutamide  (EXP)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
hydrogen sulfide  (ISO)
hydroquinone  (ISO)
leflunomide  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methoxyacetic acid  (ISO)
methylmercury chloride  (ISO)
Monobutylphthalate  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodimethylamine  (EXP)
nickel dichloride  (EXP)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Depdc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83111,554,701 - 111,575,979 (-)NCBIGRCr8
mRatBN7.2391,099,111 - 91,121,152 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl391,099,835 - 91,121,124 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx394,593,936 - 94,615,320 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03103,193,004 - 103,214,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03101,023,067 - 101,044,339 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,665,714 - 94,687,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,665,717 - 94,686,989 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03101,290,424 - 101,311,721 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4390,054,620 - 90,075,902 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1389,951,047 - 89,972,330 (-)NCBI
Celera390,159,018 - 90,180,296 (-)NCBICelera
Cytogenetic Map3q32NCBI
DEPDC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,015,878 - 33,033,582 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,015,876 - 33,033,582 (+)EnsemblGRCh38hg38GRCh38
GRCh371133,037,424 - 33,055,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361132,993,986 - 33,011,704 (+)NCBINCBI36Build 36hg18NCBI36
Celera1133,184,149 - 33,201,855 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1132,732,122 - 32,749,828 (+)NCBIHuRef
CHM1_11133,036,885 - 33,054,594 (+)NCBICHM1_1
T2T-CHM13v2.01133,151,462 - 33,169,161 (+)NCBIT2T-CHM13v2.0
Depdc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392104,552,129 - 104,573,202 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2104,552,129 - 104,573,223 (-)EnsemblGRCm39 Ensembl
GRCm382104,721,784 - 104,742,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,721,784 - 104,742,878 (-)EnsemblGRCm38mm10GRCm38
MGSCv372104,561,941 - 104,582,958 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362104,522,623 - 104,543,640 (-)NCBIMGSCv36mm8
Celera2105,957,706 - 105,980,467 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.91NCBI
Depdc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,165,138 - 13,189,693 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,167,191 - 13,189,080 (-)NCBIChiLan1.0ChiLan1.0
DEPDC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2935,239,370 - 35,257,102 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11135,244,074 - 35,261,798 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01132,992,593 - 33,010,342 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,877,807 - 32,895,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,877,807 - 32,895,493 (+)Ensemblpanpan1.1panPan2
DEPDC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11834,611,196 - 34,634,963 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1834,611,239 - 34,630,449 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1834,222,837 - 34,249,983 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01835,222,323 - 35,249,485 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1835,222,366 - 35,241,736 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11834,790,803 - 34,817,940 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01834,374,558 - 34,401,352 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01835,009,920 - 35,037,036 (-)NCBIUU_Cfam_GSD_1.0
Depdc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,760,447 - 31,782,608 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365334,886,185 - 4,907,370 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365334,886,185 - 4,907,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEPDC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl227,909,285 - 27,928,820 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1227,909,282 - 27,928,859 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2230,336,221 - 30,344,776 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DEPDC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1132,182,032 - 32,199,997 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl132,182,000 - 32,199,627 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038129,343,624 - 129,361,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Depdc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,180,258 - 14,205,511 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476714,185,332 - 14,204,632 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Depdc7
63 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:83
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000016677
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat

Markers in Region
RH131194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2391,101,156 - 91,101,369 (+)MAPPERmRatBN7.2
Rnor_6.0394,667,036 - 94,667,248NCBIRnor6.0
Rnor_5.03101,291,746 - 101,291,958UniSTSRnor5.0
RGSC_v3.4390,055,942 - 90,056,154UniSTSRGSC3.4
Celera390,160,340 - 90,160,552UniSTS
RH 3.4 Map3724.2UniSTS
Cytogenetic Map3q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 39 39 39 29 24 3
Low 3 43 18 2 19 2 8 9 74 6 17 8 8
Below cutoff 2

Sequence


RefSeq Acc Id: ENSRNOT00000016677   ⟹   ENSRNOP00000016677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,099,835 - 91,121,124 (-)Ensembl
Rnor_6.0 Ensembl394,665,717 - 94,686,989 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111299   ⟹   ENSRNOP00000082907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,099,835 - 91,120,991 (-)Ensembl
RefSeq Acc Id: NM_001029916   ⟹   NP_001025087
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83111,554,701 - 111,575,979 (-)NCBI
mRatBN7.2391,099,835 - 91,121,113 (-)NCBI
Rnor_6.0394,665,714 - 94,686,989 (-)NCBI
Rnor_5.03101,290,424 - 101,311,721 (-)NCBI
RGSC_v3.4390,054,620 - 90,075,902 (-)RGD
Celera390,159,018 - 90,180,296 (-)RGD
Sequence:
RefSeq Acc Id: XM_039104531   ⟹   XP_038960459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83111,554,714 - 111,575,808 (-)NCBI
mRatBN7.2391,099,848 - 91,120,698 (-)NCBI
RefSeq Acc Id: NP_001025087   ⟸   NM_001029916
- UniProtKB: Q4QR86 (UniProtKB/Swiss-Prot),   A6HNU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016677   ⟸   ENSRNOT00000016677
RefSeq Acc Id: XP_038960459   ⟸   XM_039104531
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZY15 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082907   ⟸   ENSRNOT00000111299
Protein Domains
DEP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QR86-F1-model_v2 AlphaFold Q4QR86 1-511 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692263
Promoter ID:EPDNEW_R2788
Type:single initiation site
Name:Depdc7_1
Description:DEP domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0394,687,000 - 94,687,060EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309720 AgrOrtholog
BioCyc Gene G2FUF-48531 BioCyc
Ensembl Genes ENSRNOG00000012262 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055024362 UniProtKB/Swiss-Prot
  ENSRNOG00060002211 UniProtKB/Swiss-Prot
  ENSRNOG00065016487 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000016677 ENTREZGENE
  ENSRNOT00000016677.6 UniProtKB/Swiss-Prot
  ENSRNOT00000111299.1 UniProtKB/TrEMBL
  ENSRNOT00055041893 UniProtKB/Swiss-Prot
  ENSRNOT00060003452 UniProtKB/Swiss-Prot
  ENSRNOT00065027436 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7442188 IMAGE-MGC_LOAD
InterPro DEP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:295971 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:114389 IMAGE-MGC_LOAD
NCBI Gene 295971 ENTREZGENE
PANTHER DEP DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEP DOMAIN-CONTAINING PROTEIN 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DEP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Depdc7 PhenoGen
PROSITE DEP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012262 RatGTEx
  ENSRNOG00055024362 RatGTEx
  ENSRNOG00060002211 RatGTEx
  ENSRNOG00065016487 RatGTEx
SMART DEP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZY15 ENTREZGENE, UniProtKB/TrEMBL
  A6HNU9 ENTREZGENE, UniProtKB/TrEMBL
  DEPD7_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Depdc7  DEP domain containing 7  RGD1309720  similar to Hypothetical protein MGC19163  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309720  similar to Hypothetical protein MGC19163  RGD1309720_predicted  similar to Hypothetical protein MGC19163 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309720_predicted  similar to Hypothetical protein MGC19163 (predicted)  LOC295971_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC295971_predicted  similar to Hypothetical protein MGC19163 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL