 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
Welcome {{ username}}
Message Center
{{ messageCount }} Messages
Watched Genes
{{$index + 1}}. {{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Watched Ontology Terms
{{gene.symbol}}: {{ gene.description }}
Save List to My RGD
| Create Name: | |
| Description: |
|
| Save what matters to you |
| {{ loginError }} |
| Sign in with your RGD account |
| Create New Account | Recover Password |
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be send to {{ username }}
Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
 |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
|
Gene-Chemical Interaction Annotations
|
|
|
Gene Ontology AnnotationsBiological Process
|
|
Cellular Component
|
|
Molecular Function
|
|
References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | GOA data from the GO Consortium |
| 3. | MGD data from the GO Consortium |
| 4. | RGD automated data pipeline |
| 5. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 6. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Adgrb3 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ADGRB3 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Adgrb3 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Adgrb3 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ADGRB3 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ADGRB3 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Adgrb3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ADGRB3 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ADGRB3 (Chlorocebus sabaeus - African green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Adgrb3 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| D9Rat158 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| D9Got243 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| RH137778 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| BE097545 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| BF399142 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| BF405766 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| BE121311 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| RH137855 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| BE119751 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| AW531581 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| AU049030 |
|
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
||||||||
Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 64 | 2 | |||||||||||
| Low | 4 | 8 | 4 | 2 | 2 | 10 | 22 | 27 | 4 | 2 | |||
| Below cutoff | 3 | 29 | 29 | 21 | 15 | 21 | 6 | 7 | 2 | 10 | 4 | 6 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001106898 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_017596334 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07067116 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07067117 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067118 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067119 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067120 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067124 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07067125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058878 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058879 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058880 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058881 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058882 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058883 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058884 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058885 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058886 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058887 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058888 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058890 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058891 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058892 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058893 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058894 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058895 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058896 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058897 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058898 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058899 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01058900 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473987 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000016194 ⟹ ENSRNOP00000016194 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | NM_001106898 ⟹ NP_001100368 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
|
||||||||||||||||||||
| Sequence: |
TTTTTTTTTTGCTTTTTGTATGCATGCATTATTTTTTCCAATCATAAATCTTGATATTTGAAGChide sequence |
| RefSeq Acc Id: | XM_017596334 ⟹ XP_017451823 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
AACAGCTTCCCGACGTCGCCAGCCCAGGATTTTACCCCCAGCTCCTCAGCCGCGCTCCGTCCAThide sequence |
Protein Sequences| Protein RefSeqs | NP_001100368 | (Get FASTA) | NCBI Sequence Viewer |
| XP_017451823 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDM18608 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001100368 ⟸ NM_001106898 |
| - UniProtKB: | D4A831 (UniProtKB/TrEMBL) |
| - Sequence: |
MKAVRNLLIYIFSTYLLVMFGFNAAQDFWCSTLVKGVIYGSYSVSEMFPKNFTNCTWTLENPDPhide sequence |
| RefSeq Acc Id: | XP_017451823 ⟸ XM_017596334 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MKAVRNLLIYIFSTYLLVMFGFNAAQDFWCSTLVKGVIYGSYSVSEMFPKNFTNCTWTLENPDPhide sequence |
| RefSeq Acc Id: | ENSRNOP00000016194 ⟸ ENSRNOT00000016194 |
Protein Domains
CUB G_PROTEIN_RECEP_F2_3 G_PROTEIN_RECEP_F2_4 GPS
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1309703 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000012045 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000016194 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000016194 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.20.100.10 | UniProtKB/TrEMBL |
| 4.10.1240.10 | UniProtKB/TrEMBL | |
| InterPro | CUB_dom | UniProtKB/TrEMBL |
| GAIN_dom_N | UniProtKB/TrEMBL | |
| GPCR_2-like | UniProtKB/TrEMBL | |
| GPCR_2_brain-spec_angio_inhib | UniProtKB/TrEMBL | |
| GPCR_2_extracell_dom_sf | UniProtKB/TrEMBL | |
| GPCR_2_extracellular_dom | UniProtKB/TrEMBL | |
| GPCR_2_secretin-like | UniProtKB/TrEMBL | |
| GPCR_2_secretin-like_CS | UniProtKB/TrEMBL | |
| GPS_dom | UniProtKB/TrEMBL | |
| Thrombospondin_1_rpt | UniProtKB/TrEMBL | |
| TSP1_rpt_sf | UniProtKB/TrEMBL | |
| KEGG Report | rno:301309 | UniProtKB/TrEMBL |
| NCBI Gene | 301309 | ENTREZGENE |
| Pfam | 7tm_2 | UniProtKB/TrEMBL |
| GAIN | UniProtKB/TrEMBL | |
| GPS | UniProtKB/TrEMBL | |
| HRM | UniProtKB/TrEMBL | |
| TSP_1 | UniProtKB/TrEMBL | |
| PhenoGen | Adgrb3 | PhenoGen |
| PRINTS | BAIPRECURSOR | UniProtKB/TrEMBL |
| GPCRSECRETIN | UniProtKB/TrEMBL | |
| PROSITE | CUB | UniProtKB/TrEMBL |
| G_PROTEIN_RECEP_F2_2 | UniProtKB/TrEMBL | |
| G_PROTEIN_RECEP_F2_3 | UniProtKB/TrEMBL | |
| G_PROTEIN_RECEP_F2_4 | UniProtKB/TrEMBL | |
| GPS | UniProtKB/TrEMBL | |
| TSP1 | UniProtKB/TrEMBL | |
| SMART | GPS | UniProtKB/TrEMBL |
| HormR | UniProtKB/TrEMBL | |
| TSP1 | UniProtKB/TrEMBL | |
| Superfamily-SCOP | TSP1 | UniProtKB/TrEMBL |
| UniGene | Rn.204758 | ENTREZGENE |
| UniProt | D4A831 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2015-03-16 | Adgrb3 | adhesion G protein-coupled receptor B3 | Bai3 | brain-specific angiogenesis inhibitor 3 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | Bai3 | brain-specific angiogenesis inhibitor 3 | Bai3_predicted | brain-specific angiogenesis inhibitor 3 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-12 | Bai3_predicted | brain-specific angiogenesis inhibitor 3 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
 |
| More on Adgrb3 | |
|
Alliance Gene |
|
NCBI Gene |
|
Ensembl Gene |
|
|
JBrowse: rn5 rn6 |
|
NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1309703 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-06-09 |
| Status: | ACTIVE |
