Cd83 (CD83 molecule) - Rat Genome Database

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Gene: Cd83 (CD83 molecule) Rattus norvegicus
Analyze
Symbol: Cd83
Name: CD83 molecule
RGD ID: 1309677
Description: Predicted to act upstream of or within positive regulation of CD4-positive, alpha-beta T cell differentiation; regulation of cytokine production; and response to organic cyclic compound. Predicted to be located in external side of plasma membrane. Orthologous to human CD83 (CD83 molecule); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CD83 antigen; LOC361226
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,093,281 - 21,113,223 (-)NCBIGRCr8
mRatBN7.21720,887,309 - 20,907,009 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1720,887,309 - 20,907,083 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1720,778,668 - 20,798,022 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01722,382,336 - 22,401,688 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01720,705,739 - 20,725,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01724,416,651 - 24,435,790 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1724,416,651 - 24,435,790 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01726,364,944 - 26,384,002 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41726,705,646 - 26,725,470 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11726,708,487 - 26,728,221 (-)NCBI
Celera1720,585,869 - 20,605,266 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,10-phenanthroline  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-hexylcinnamaldehyde  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
alternariol  (ISO)
aluminium hydroxide  (ISO)
antirheumatic drug  (ISO)
aripiprazole  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atorvastatin calcium  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
betamethasone valerate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (EXP)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
entinostat  (ISO)
exemestane  (ISO)
ferric oxide  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
gentamycin  (EXP)
glycidol  (ISO)
GW 4064  (ISO)
helenalin  (ISO)
immunological adjuvant  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
inulin  (ISO)
isoflurane  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lamivudine  (ISO)
Lasiocarpine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
lupane  (ISO)
methotrexate  (ISO)
methylarsonic acid  (ISO)
methylisothiazolinone  (ISO)
muramyl dipeptide  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
o-anisidine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenanthridone  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phthalaldehyde  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resorcinol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 203580  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (ISO)
topotecan  (EXP)
tributylstannane  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zidovudine  (ISO)
zinc protoporphyrin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15322158   PMID:21079552   PMID:21873635   PMID:33171217  


Genomics

Comparative Map Data
Cd83
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,093,281 - 21,113,223 (-)NCBIGRCr8
mRatBN7.21720,887,309 - 20,907,009 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1720,887,309 - 20,907,083 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1720,778,668 - 20,798,022 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01722,382,336 - 22,401,688 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01720,705,739 - 20,725,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01724,416,651 - 24,435,790 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1724,416,651 - 24,435,790 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01726,364,944 - 26,384,002 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41726,705,646 - 26,725,470 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11726,708,487 - 26,728,221 (-)NCBI
Celera1720,585,869 - 20,605,266 (-)NCBICelera
Cytogenetic Map17p14NCBI
CD83
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38614,117,256 - 14,136,918 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl614,117,256 - 14,136,918 (+)EnsemblGRCh38hg38GRCh38
GRCh37614,117,487 - 14,137,149 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36614,225,844 - 14,245,128 (+)NCBINCBI36Build 36hg18NCBI36
Build 34614,225,743 - 14,245,086NCBI
Celera615,357,416 - 15,376,702 (+)NCBICelera
Cytogenetic Map6p23NCBI
HuRef614,062,667 - 14,082,325 (+)NCBIHuRef
CHM1_1614,119,656 - 14,139,317 (+)NCBICHM1_1
T2T-CHM13v2.0613,989,721 - 14,009,378 (+)NCBIT2T-CHM13v2.0
Cd83
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391343,938,661 - 43,956,608 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1343,938,251 - 43,956,608 (+)EnsemblGRCm39 Ensembl
GRCm381343,785,112 - 43,803,133 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1343,784,775 - 43,803,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv371343,880,476 - 43,898,501 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361343,796,175 - 43,814,104 (+)NCBIMGSCv36mm8
Celera1344,864,325 - 44,882,353 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.6NCBI
Cd83
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955465674,168 - 693,353 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955465676,006 - 692,770 (-)NCBIChiLan1.0ChiLan1.0
CD83
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2528,763,154 - 28,789,634 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1624,752,855 - 24,780,255 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0613,961,342 - 13,980,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1614,330,752 - 14,349,946 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl614,330,752 - 14,349,946 (+)Ensemblpanpan1.1panPan2
CD83
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13513,489,046 - 13,507,897 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3513,489,000 - 13,507,068 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3513,437,455 - 13,456,232 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03513,586,640 - 13,605,467 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3513,586,548 - 13,605,467 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13513,411,926 - 13,430,721 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03513,463,644 - 13,482,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03514,789,321 - 14,808,126 (+)NCBIUU_Cfam_GSD_1.0
Cd83
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,076,519 - 11,093,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936552637,043 - 656,452 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936552637,471 - 654,422 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD83
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl710,359,211 - 10,385,961 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1710,346,122 - 10,385,968 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2710,799,701 - 10,818,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD83
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,022,817 - 58,052,041 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1758,022,593 - 58,041,983 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604414,155,232 - 14,174,626 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd83
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,210,892 - 12,229,749 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475612,212,921 - 12,229,974 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cd83
181 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:123
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000024458
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)171398677321975515Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171533061323017269Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat

Markers in Region
RH131636  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21720,887,339 - 20,887,529 (-)MAPPERmRatBN7.2
Rnor_6.01724,435,570 - 24,435,759NCBIRnor6.0
Rnor_5.01726,383,782 - 26,383,971UniSTSRnor5.0
RGSC_v3.41726,705,677 - 26,705,866UniSTSRGSC3.4
Celera1720,585,900 - 20,586,089UniSTS
RH 3.4 Map17266.2UniSTS
Cytogenetic Map17p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000024458   ⟹   ENSRNOP00000024458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1720,887,309 - 20,906,703 (-)Ensembl
Rnor_6.0 Ensembl1724,416,651 - 24,435,790 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095432   ⟹   ENSRNOP00000094207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1720,887,309 - 20,907,083 (-)Ensembl
RefSeq Acc Id: NM_001108410   ⟹   NP_001101880
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,093,281 - 21,112,677 (-)NCBI
mRatBN7.21720,887,309 - 20,906,703 (-)NCBI
Rnor_6.01724,416,651 - 24,435,790 (+)NCBI
Rnor_5.01726,364,944 - 26,384,002 (+)NCBI
RGSC_v3.41726,705,646 - 26,725,470 (-)RGD
Celera1720,585,869 - 20,605,266 (-)RGD
Sequence:
RefSeq Acc Id: XM_017600599   ⟹   XP_017456088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,095,940 - 21,113,223 (-)NCBI
mRatBN7.21720,889,948 - 20,906,725 (-)NCBI
Rnor_6.01724,416,665 - 24,433,131 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001101880 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456088 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66582 (Get FASTA)   NCBI Sequence Viewer  
  EDL98190 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024458.4
  ENSRNOP00000094207.1
RefSeq Acc Id: NP_001101880   ⟸   NM_001108410
- Peptide Label: precursor
- UniProtKB: B2GV95 (UniProtKB/TrEMBL),   A6J740 (UniProtKB/TrEMBL),   A0A8I6ALP3 (UniProtKB/TrEMBL),   F7ERE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456088   ⟸   XM_017600599
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000024458   ⟸   ENSRNOT00000024458
Ensembl Acc Id: ENSRNOP00000094207   ⟸   ENSRNOT00000095432
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2GV95-F1-model_v2 AlphaFold B2GV95 1-196 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700387
Promoter ID:EPDNEW_R10911
Type:single initiation site
Name:Cd83_1
Description:CD83 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01724,416,724 - 24,416,784EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309677 AgrOrtholog
BioCyc Gene G2FUF-9815 BioCyc
Ensembl Genes ENSRNOG00000018092 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024458.6 UniProtKB/TrEMBL
  ENSRNOT00000095432.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7385133 IMAGE-MGC_LOAD
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
KEGG Report rno:361226 UniProtKB/TrEMBL
MGC_CLONE MGC:188297 IMAGE-MGC_LOAD
NCBI Gene 361226 ENTREZGENE
PANTHER CD83 ANTIGEN UniProtKB/TrEMBL
  CD83 ANTIGEN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Cd83 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018092 RatGTEx
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8I6ALP3 ENTREZGENE, UniProtKB/TrEMBL
  A6J740 ENTREZGENE, UniProtKB/TrEMBL
  B2GV95 ENTREZGENE
  F7ERE9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B2GV95 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Cd83  CD83 molecule  Cd83  CD83 antigen   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cd83  CD83 antigen   Cd83_predicted  CD83 antigen (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cd83_predicted  CD83 antigen (predicted)      Symbol and Name status set to approved 70820 APPROVED