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Gene: Usp40 (ubiquitin specific peptidase 40) Rattus norvegicus
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Symbol: Usp40
Name: ubiquitin specific peptidase 40
Description: Predicted to have cysteine-type endopeptidase activity and thiol-dependent ubiquitin-specific protease activity. Predicted to be involved in protein deubiquitination and regulation of protein stability. Predicted to localize to the cytosol. Orthologous to human USP40 (ubiquitin specific peptidase 40); INTERACTS WITH (RS)-amphetamine; 1,3-dinitrobenzene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC316599; LRRGT00071; sorbitol dehydrogenase-like; ubiquitin carboxyl-terminal hydrolase 40; ubiquitin specific protease 40; ubiquitin thioesterase 40
Orthologs:
Homo sapiens (human) : USP40 (ubiquitin specific peptidase 40)  HGNC  Alliance
Mus musculus (house mouse) : Usp40 (ubiquitin specific peptidase 40)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Usp40 (ubiquitin specific peptidase 40)
Pan paniscus (bonobo/pygmy chimpanzee) : USP40 (ubiquitin specific peptidase 40)
Canis lupus familiaris (dog) : USP40 (ubiquitin specific peptidase 40)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Usp40 (ubiquitin specific peptidase 40)
Sus scrofa (pig) : USP40 (ubiquitin specific peptidase 40)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0995,072,096 - 95,143,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0994,791,208 - 94,862,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,897,870 - 86,968,850 (-)NCBIRGSC3.4rn4RGSC3.4
Celera986,169,618 - 86,240,347 (-)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Usp40
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309613
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.