Aopep (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 17 | 1,817,001 - 2,133,008 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 17 | 1,811,281 - 2,127,316 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 17 | 1,811,980 - 2,127,331 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 17 | 1,829,980 - 2,145,965 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 17 | 3,372,578 - 3,688,561 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 17 | 1,827,430 - 2,143,418 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 17 | 507,389 - 825,062 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 17 | 507,377 - 821,582 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 17 | 550,168 - 550,965 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Rnor_5.0 | 17 | 568,777 - 814,393 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 17 | 7,353,426 - 7,624,936 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 17 | 7,353,425 - 7,624,936 (-) | NCBI | | | | | Celera | 17 | 446,696 - 707,342 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | p14 | NCBI | | | | |
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AOPEP (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 9 | 94,726,699 - 95,150,224 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 94,726,604 - 95,151,793 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 97,488,981 - 97,849,441 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 9 | 96,528,815 - 96,889,262 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 9 | 94,568,548 - 94,928,995 | NCBI | | | | | Celera | 9 | 67,929,905 - 68,290,531 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q22.32 | NCBI | | | | | HuRef | 9 | 67,097,489 - 67,459,053 (+) | NCBI | | HuRef | | | CHM1_1 | 9 | 97,635,390 - 97,995,978 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 106,896,013 - 107,317,676 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Aopep (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 13 | 63,112,707 - 63,473,910 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 63,112,707 - 63,473,910 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 62,964,893 - 63,326,096 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 62,964,893 - 63,326,096 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 13 | 63,116,294 - 63,400,964 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 13 | 62,974,516 - 63,309,939 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 13 | 64,682,940 - 64,953,836 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | B3 | NCBI | | | | | cM Map | 13 | 32.8 | NCBI | | | | |
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Aopep (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 | NW_004955422 | 21,680,488 - 22,020,935 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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AOPEP (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 11 | 44,299,187 - 44,728,355 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 9 | 44,301,567 - 44,730,736 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 9 | 65,825,138 - 66,188,001 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 9 | 93,953,844 - 94,315,510 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 9 | 93,986,951 - 94,311,201 (+) | Ensembl | panpan1.1 | | panPan2 | |
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AOPEP (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 1 | 71,770,687 - 72,009,374 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 71,677,068 - 72,009,395 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 72,438,651 - 72,771,366 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 71,981,049 - 72,313,890 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 71,981,051 - 72,313,868 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 71,792,454 - 72,124,878 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 71,556,523 - 71,890,575 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 72,262,807 - 72,595,715 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Aopep (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404944 | 4,466,607 - 4,745,317 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936626 | 3,667,123 - 3,970,433 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936626 | 3,704,474 - 3,973,913 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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AOPEP (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 10 | 27,078,113 - 27,472,310 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 10 | 27,078,115 - 27,472,347 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 10 | 31,342,998 - 31,670,377 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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AOPEP (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 12 | 108,007,895 - 108,360,361 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 12 | 108,171,743 - 108,360,041 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666038 | 96,390,611 - 96,723,601 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Aopep (Heterocephalus glaber - naked mole-rat) |
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