Cmss1 (cms1 ribosomal small subunit homolog) - Rat Genome Database

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Gene: Cmss1 (cms1 ribosomal small subunit homolog) Rattus norvegicus
Analyze
Symbol: Cmss1
Name: cms1 ribosomal small subunit homolog
RGD ID: 1309437
Description: Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cms1 ribosomal small subunit homolog (yeast); hypothetical protein LOC288176; LOC288176; MGC108788; RGD1309437; similar to RIKEN cDNA 2610528E23; uncharacterized protein C3orf26 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,403,620 - 56,701,751 (+)NCBIGRCr8
mRatBN7.21142,934,390 - 43,232,624 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,934,440 - 43,232,624 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1151,691,140 - 51,988,856 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01144,352,719 - 44,650,457 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,481,315 - 43,779,056 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01145,031,627 - 45,330,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,304,068 - 45,330,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,227,651 - 48,526,022 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,763,988 - 44,068,609 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11143,821,576 - 44,126,198 (+)NCBI
Celera1142,729,243 - 43,026,886 (+)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
90S preribosome  (IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Cmss1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,403,620 - 56,701,751 (+)NCBIGRCr8
mRatBN7.21142,934,390 - 43,232,624 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,934,440 - 43,232,624 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1151,691,140 - 51,988,856 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01144,352,719 - 44,650,457 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,481,315 - 43,779,056 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01145,031,627 - 45,330,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,304,068 - 45,330,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,227,651 - 48,526,022 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,763,988 - 44,068,609 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11143,821,576 - 44,126,198 (+)NCBI
Celera1142,729,243 - 43,026,886 (+)NCBICelera
Cytogenetic Map11q12NCBI
CMSS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38399,817,862 - 100,181,732 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl399,817,837 - 100,181,732 (+)EnsemblGRCh38hg38GRCh38
GRCh37399,536,706 - 99,900,576 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,019,371 - 101,380,137 (+)NCBINCBI36Build 36hg18NCBI36
Celera397,925,790 - 98,288,081 (+)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef396,904,913 - 97,265,639 (+)NCBIHuRef
CHM1_1399,499,704 - 99,860,531 (+)NCBICHM1_1
T2T-CHM13v2.03102,522,903 - 102,887,068 (+)NCBIT2T-CHM13v2.0
Cmss1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391657,122,362 - 57,427,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1657,122,363 - 57,427,227 (-)EnsemblGRCm39 Ensembl
GRCm381657,301,999 - 57,606,867 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1657,302,000 - 57,606,864 (-)EnsemblGRCm38mm10GRCm38
MGSCv371657,302,113 - 57,606,980 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361657,223,358 - 57,527,989 (-)NCBIMGSCv36mm8
Celera1657,628,292 - 57,931,867 (-)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1634.22NCBI
Cmss1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554271,668,471 - 1,734,494 (+)NCBIChiLan1.0ChiLan1.0
CMSS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2297,763,434 - 98,123,856 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1397,768,320 - 98,128,639 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0396,911,423 - 97,271,711 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13103,594,246 - 103,954,435 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3103,917,730 - 103,954,435 (+)Ensemblpanpan1.1panPan2
CMSS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1336,442,721 - 6,818,394 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl336,443,035 - 6,818,171 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha336,442,013 - 6,973,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0336,424,979 - 6,956,940 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl336,425,053 - 6,566,276 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl336,582,244 - 6,956,717 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1336,310,047 - 6,845,079 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0336,360,807 - 6,892,880 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0336,844,108 - 7,222,833 (+)NCBIUU_Cfam_GSD_1.0
UU_Cfam_GSD_1.0336,644,494 - 6,786,927 (+)NCBIUU_Cfam_GSD_1.0
Cmss1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602150,212,734 - 150,531,849 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366303,110,843 - 3,429,608 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366303,109,765 - 3,429,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMSS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,800,142 - 159,192,107 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,798,780 - 159,192,153 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213168,488,979 - 168,533,672 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CMSS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12280,703,785 - 81,075,083 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2280,703,774 - 80,736,647 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604185,501,176 - 85,871,318 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmss1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478913,535,965 - 13,567,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478913,160,508 - 13,567,354 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cmss1
964 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:22
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000031464
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat

Markers in Region
D11Got38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,978,140 - 42,978,390 (+)MAPPERmRatBN7.2
Rnor_6.01145,075,378 - 45,075,627NCBIRnor6.0
Rnor_5.01148,271,341 - 48,271,590UniSTSRnor5.0
RH 3.4 Map11325.9RGD
RH 3.4 Map11325.9UniSTS
RH 2.0 Map11290.5RGD
Cytogenetic Map11q12UniSTS
D11Got41  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,150,411 - 43,150,624 (+)MAPPERmRatBN7.2
Rnor_6.01145,248,275 - 45,248,487NCBIRnor6.0
Rnor_6.01145,597,574 - 45,597,786NCBIRnor6.0
Rnor_5.01148,786,968 - 48,787,180UniSTSRnor5.0
Rnor_5.01148,443,978 - 48,444,190UniSTSRnor5.0
RGSC_v3.41143,984,975 - 43,985,187RGDRGSC3.4
RGSC_v3.41143,984,975 - 43,985,187UniSTSRGSC3.4
RGSC_v3.11144,042,564 - 44,042,776RGD
Celera1142,944,755 - 42,944,967UniSTS
RH 3.4 Map11319.2RGD
RH 3.4 Map11319.2UniSTS
RH 2.0 Map11306.8RGD
Cytogenetic Map11q12UniSTS
D11Uwm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,978,119 - 42,978,261 (+)MAPPERmRatBN7.2
Rnor_6.01145,075,357 - 45,075,498NCBIRnor6.0
Rnor_5.01148,271,320 - 48,271,461UniSTSRnor5.0
Cytogenetic Map11q12UniSTS
RH129929  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,232,361 - 43,232,562 (+)MAPPERmRatBN7.2
Rnor_6.01145,330,219 - 45,330,419NCBIRnor6.0
Rnor_5.01148,525,760 - 48,525,960UniSTSRnor5.0
RGSC_v3.41144,068,347 - 44,068,547UniSTSRGSC3.4
Celera1143,026,624 - 43,026,824UniSTS
RH 3.4 Map11322.6UniSTS
Cytogenetic Map11q12UniSTS
BF389142  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,938,440 - 42,938,623 (+)MAPPERmRatBN7.2
Rnor_6.01145,035,667 - 45,035,849NCBIRnor6.0
Rnor_5.01148,231,715 - 48,231,897UniSTSRnor5.0
RGSC_v3.41143,767,962 - 43,768,145UniSTSRGSC3.4
Celera1142,733,213 - 42,733,395UniSTS
RH 3.4 Map11323.7UniSTS
Cytogenetic Map11q12UniSTS
BE110684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,092,519 - 43,092,616 (+)MAPPERmRatBN7.2
Rnor_6.01145,190,571 - 45,190,667NCBIRnor6.0
Rnor_5.01148,386,274 - 48,386,370UniSTSRnor5.0
RGSC_v3.41143,926,947 - 43,927,043UniSTSRGSC3.4
Celera1142,886,985 - 42,887,081UniSTS
RH 3.4 Map11320.8UniSTS
Cytogenetic Map11q12UniSTS
BI293688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,994,151 - 42,994,336 (+)MAPPERmRatBN7.2
Rnor_6.01145,091,379 - 45,091,563NCBIRnor6.0
Rnor_5.01148,287,082 - 48,287,266UniSTSRnor5.0
RGSC_v3.41143,827,085 - 43,827,269UniSTSRGSC3.4
Celera1142,788,776 - 42,788,960UniSTS
RH 3.4 Map11330.8UniSTS
Cytogenetic Map11q12UniSTS
AI175437  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,937,379 - 42,937,499 (+)MAPPERmRatBN7.2
Rnor_6.01145,034,606 - 45,034,725NCBIRnor6.0
Rnor_5.01148,230,654 - 48,230,773UniSTSRnor5.0
RGSC_v3.41143,766,897 - 43,767,016UniSTSRGSC3.4
Celera1142,732,152 - 42,732,271UniSTS
RH 3.4 Map11324.5UniSTS
Cytogenetic Map11q12UniSTS
fj02a09.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,212,826 - 43,213,450 (+)MAPPERmRatBN7.2
mRatBN7.21143,212,846 - 43,213,450 (+)MAPPERmRatBN7.2
Rnor_6.01145,310,703 - 45,311,306NCBIRnor6.0
Rnor_6.01145,310,683 - 45,311,306NCBIRnor6.0
Rnor_5.01148,506,244 - 48,506,847UniSTSRnor5.0
Rnor_5.01148,506,224 - 48,506,847UniSTSRnor5.0
RGSC_v3.41144,048,811 - 44,049,434UniSTSRGSC3.4
RGSC_v3.41144,048,831 - 44,049,434UniSTSRGSC3.4
Celera1143,007,111 - 43,007,714UniSTS
Celera1143,007,091 - 43,007,714UniSTS
Cytogenetic Map11q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 24 33 26 13 26 1 74 27 40 3
Low 1 19 24 15 6 15 8 10 8 1 8 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000031464   ⟹   ENSRNOP00000031451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,205,402 - 43,232,624 (+)Ensembl
Rnor_6.0 Ensembl1145,304,068 - 45,330,481 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106111   ⟹   ENSRNOP00000094701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1142,934,440 - 43,232,624 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106324   ⟹   ENSRNOP00000097253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1142,994,424 - 43,232,606 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109440   ⟹   ENSRNOP00000077303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,111,614 - 43,232,624 (+)Ensembl
RefSeq Acc Id: NM_001013866   ⟹   NP_001013888
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,620 - 56,701,751 (+)NCBI
mRatBN7.21142,934,471 - 43,232,624 (+)NCBI
Rnor_6.01145,031,697 - 45,330,481 (+)NCBI
Rnor_5.01148,227,651 - 48,526,022 (+)NCBI
RGSC_v3.41143,763,988 - 44,068,609 (+)RGD
Celera1142,729,243 - 43,026,886 (+)RGD
Sequence:
RefSeq Acc Id: XM_063270410   ⟹   XP_063126480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,739 - 56,701,739 (+)NCBI
RefSeq Acc Id: NP_001013888   ⟸   NM_001013866
- UniProtKB: Q5FVR6 (UniProtKB/Swiss-Prot),   A6IQM4 (UniProtKB/TrEMBL),   A0A0H2UHT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000031451   ⟸   ENSRNOT00000031464
RefSeq Acc Id: ENSRNOP00000097253   ⟸   ENSRNOT00000106324
RefSeq Acc Id: ENSRNOP00000094701   ⟸   ENSRNOT00000106111
RefSeq Acc Id: ENSRNOP00000077303   ⟸   ENSRNOT00000109440
RefSeq Acc Id: XP_063126480   ⟸   XM_063270410
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVR6-F1-model_v2 AlphaFold Q5FVR6 1-276 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309437 AgrOrtholog
BioCyc Gene G2FUF-21546 BioCyc
Ensembl Genes ENSRNOG00000027888 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055013298 UniProtKB/Swiss-Prot
  ENSRNOG00060012564 UniProtKB/Swiss-Prot
  ENSRNOG00065002050 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000031464.5 UniProtKB/TrEMBL
  ENSRNOT00000106111 ENTREZGENE
  ENSRNOT00000106111.1 UniProtKB/Swiss-Prot
  ENSRNOT00000106324.1 UniProtKB/TrEMBL
  ENSRNOT00000109440.1 UniProtKB/TrEMBL
  ENSRNOT00055022858 UniProtKB/Swiss-Prot
  ENSRNOT00060021346 UniProtKB/Swiss-Prot
  ENSRNOT00065002697 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321402 IMAGE-MGC_LOAD
InterPro Cms1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:288176 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108788 IMAGE-MGC_LOAD
NCBI Gene 288176 ENTREZGENE
PANTHER PROTEIN CMSS1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24030 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CMS1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cmss1 PhenoGen
RatGTEx ENSRNOG00000027888 RatGTEx
  ENSRNOG00055013298 RatGTEx
  ENSRNOG00060012564 RatGTEx
  ENSRNOG00065002050 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHT9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y650_RAT UniProtKB/TrEMBL
  A0A8I6ANA9_RAT UniProtKB/TrEMBL
  A6IQM4 ENTREZGENE, UniProtKB/TrEMBL
  CMS1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-15 Cmss1  cms1 ribosomal small subunit homolog  Cmss1  cms1 ribosomal small subunit homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Cmss1  cms1 ribosomal small subunit homolog (yeast)  RGD1309437  similar to RIKEN cDNA 2610528E23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309437  similar to RIKEN cDNA 2610528E23  RGD1309437_predicted  similar to RIKEN cDNA 2610528E23 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309437_predicted  similar to RIKEN cDNA 2610528E23 (predicted)  LOC288176_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288176_predicted  similar to RIKEN cDNA 2610528E23 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL