Rpl34 (ribosomal protein L34) - Rat Genome Database

Name: Rpl34
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rpl34 (ribosomal protein L34) Rattus norvegicus

Analyze

Symbol:

Rpl34

Name:

ribosomal protein L34

RGD ID:

1309402

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPL34 (ribosomal protein L34); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

60S ribosomal protein L34; LOC362041; ribosomal protein L34-like 2; Rpl34l2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL34 (ribosomal protein L34)	HGNC	EggNOG, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rpl34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rpl34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPL34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl34 (ribosomal protein L34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RPL34 (ribosomal protein L34)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Rpl34 (ribosomal protein L34)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Rpl34-ps1 (ribosomal protein L34, pseudogene 1)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	rpl34 (ribosomal protein L34)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	rpl-34	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPL34A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPL34B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpL34a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpL34b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Rpl34-ps1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	219,284,373 - 219,288,108 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	219,284,382 - 219,288,111 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	226,947,383 - 226,951,117 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	224,847,059 - 224,850,792 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	219,704,686 - 219,708,420 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	235,850,281 - 235,854,021 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	235,850,334 - 235,852,708 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	254,401,907 - 254,418,755 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	228,146,286 - 228,150,017 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	228,133,025 - 228,196,483 (-)	NCBI
Celera	2	211,547,715 - 211,551,446 (-)	NCBI		Celera
Cytogenetic Map	2	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3',5'-cyclic UMP (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acetylsalicylic acid (ISO)

actinomycin D (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

chloropicrin (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibric acid (EXP)

copper(II) sulfate (ISO)

cylindrospermopsin (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenthion (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glafenine (EXP)

hydralazine (ISO)

isobutanol (ISO)

ivermectin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (EXP)

nimesulide (EXP)

paracetamol (EXP,ISO)

perfluorooctanoic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

senecionine (ISO)

sodium arsenite (EXP,ISO)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

trichloroethene (EXP)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

translation (IEA)

Cellular Component

cytosol (ISO)

cytosolic large ribosomal subunit (IBA,IDA,ISO)

cytosolic ribosome (ISO)

endoplasmic reticulum (IEA,ISO)

nucleolus (ISO)

ribonucleoprotein complex (IEA)

ribosome (IEA)

synapse (ISO)

Molecular Function

molecular_function (ND)

protein binding (IPI,ISO)

structural constituent of ribosome (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Structures of the human and Drosophila 80S ribosome.	Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles.	Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
8.	Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'.	Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.

Additional References at PubMed

PMID:2721685	PMID:12477932	PMID:12962325	PMID:18614015	PMID:20458337	PMID:24625528	PMID:25468996

Genomics

Comparative Map Data

Rpl34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	219,284,373 - 219,288,108 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	219,284,382 - 219,288,111 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	226,947,383 - 226,951,117 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	224,847,059 - 224,850,792 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	219,704,686 - 219,708,420 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	235,850,281 - 235,854,021 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	235,850,334 - 235,852,708 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	254,401,907 - 254,418,755 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	228,146,286 - 228,150,017 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	228,133,025 - 228,196,483 (-)	NCBI
Celera	2	211,547,715 - 211,551,446 (-)	NCBI		Celera
Cytogenetic Map	2	q43	NCBI

RPL34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	108,620,576 - 108,630,484 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	108,620,569 - 108,630,412 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	109,541,732 - 109,551,640 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	109,761,171 - 109,771,089 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	106,836,713 - 106,846,631 (+)	NCBI		Celera
Cytogenetic Map	4	q25	NCBI
HuRef	4	105,273,495 - 105,283,414 (+)	NCBI		HuRef
CHM1_1	4	109,518,568 - 109,528,486 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	111,923,483 - 111,933,392 (+)	NCBI		T2T-CHM13v2.0

Rpl34
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	130,520,476 - 130,524,047 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	130,520,480 - 130,524,047 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	130,726,827 - 130,730,398 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	130,726,831 - 130,730,398 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	130,429,749 - 130,433,226 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	130,715,986 - 130,719,479 (-)	NCBI		MGSCv36	mm8
Celera	3	137,242,619 - 137,246,096 (-)	NCBI		Celera
Cytogenetic Map	3	G3	NCBI

Rpl34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955496	1,374,959 - 1,378,971 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955496	1,374,959 - 1,378,971 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPL34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	111,694,188 - 111,698,808 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	111,692,820 - 111,698,808 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	101,122,939 - 101,127,616 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RPL34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	28,989,797 - 28,994,375 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	28,989,880 - 28,994,375 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	13,026,633 - 13,031,203 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	29,218,326 - 29,222,896 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	29,217,834 - 29,224,473 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl	25	18,724,120 - 18,724,473 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	29,213,106 - 29,217,596 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	28,957,186 - 28,961,757 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	10,894,388 - 10,899,012 (-)	NCBI		UU_Cfam_GSD_1.0

Rpl34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	12,105,229 - 12,108,804 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936818	71,077 - 78,082 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936818	74,523 - 78,037 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL34
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	113,467,782 - 113,471,982 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	113,467,779 - 113,472,058 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	121,707,364 - 121,711,637 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	56,549,635 - 56,553,831 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	35,175,054 - 35,179,279 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624830	994,682 - 1,003,200 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624830	999,316 - 1,003,223 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rpl34
8 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	136
Count of miRNA genes:	105
Interacting mature miRNAs:	113
Transcripts:	ENSRNOT00000005772, ENSRNOT00000009046, ENSRNOT00000057895
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	184165752	229165752	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	185876309	219753474	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	185876309	219753474	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	189599258	226936289	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	189599258	234599258	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	189599258	234599258	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	190613715	226808892	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	199341726	234244620	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	202446871	237938339	Rat
2299161	Iddm33	Insulin dependent diabetes mellitus QTL 33	2.98		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	206312063	220876787	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	215377404	237938339	Rat
1331767	Hrtrt12	Heart rate QTL 12	3.373		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	218414747	240841241	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High	2	10	14	14	3	14			18	16	26	1
Medium	1	33	43	27	16	27	8	11	56	19	15	10	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000005772 ⟹ ENSRNOP00000060949

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	235,850,334 - 235,852,708 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000009046 ⟹ ENSRNOP00000009046

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	219,284,382 - 219,288,111 (-)	Ensembl
Rnor_6.0 Ensembl	2	235,850,334 - 235,852,708 (-)	Ensembl

RefSeq Acc Id:

NM_001108567 ⟹ NP_001102037

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	219,284,376 - 219,288,108 (-)	NCBI
Rnor_6.0	2	235,850,290 - 235,854,021 (-)	NCBI
Rnor_5.0	2	254,401,907 - 254,418,755 (-)	NCBI
RGSC_v3.4	2	228,146,286 - 228,150,017 (-)	RGD
Celera	2	211,547,715 - 211,551,446 (-)	RGD

Sequence:

show sequence

CTTCCGGGGACGGTGCTTAGAGGCACTCAGGATGGTCCAGCGTTTGACATACCGTCGTAGGCTT
TCCTACAATACAGCCTCTAACAAAACTAGGCTGTCTCGAACCCCTGGCAACAGGATCGTTTACC
TTTACACCAAGAAGGTCGGGAAAGCACCTAAATCCGCATGTGGCGTGTGCCCAGGCAGACTGCG
AGGGGTCCGTGCTGTGAGACCCAAAGTCCTCATGAGATTGTCCAAGACAAAGAAGCACGTCAGC
AGGGCCTATGGTGGCTCCATGTGCGCCAAGTGTGTCCGGGACAGGATCAAGCGGGCTTTCCTTA
TCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCAAAATA
AATGGGCAGCTTTTTTAAGTAATAAAAATCAAGACTTCGTCTACGAAAAAAAAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_006233314 ⟹ XP_006233376

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	219,284,373 - 219,288,105 (-)	NCBI
Rnor_6.0	2	235,850,281 - 235,853,992 (-)	NCBI
Rnor_5.0	2	254,401,907 - 254,418,755 (-)	NCBI

Sequence:

show sequence

GGCCTGTTTCGGCTCTGTGGCTTTTCTGTTTACGATCCGTACCCATCCGAGGAGCTAGGCAGGC
GGGACGCCCTCGGGGTCGGTGCTGTAGCTGGGGTTAGTGGTGAGGGACGAGGAGAGGTGCATAC
CGGGCGGGTGGTCCGCTCGTAGTTTCGGAAAGCCCTCGATCGAACCAGCGCGTCCGAAGCGGCA
CTCAGGATGGTCCAGCGTTTGACATACCGTCGTAGGCTTTCCTACAATACAGCCTCTAACAAAA
CTAGGCTGTCTCGAACCCCTGGCAACAGGATCGTTTACCTTTACACCAAGAAGGTCGGGAAAGC
ACCTAAATCCGCATGTGGCGTGTGCCCAGGCAGACTGCGAGGGGTCCGTGCTGTGAGACCCAAA
GTCCTCATGAGATTGTCCAAGACAAAGAAGCACGTCAGCAGGGCCTATGGTGGCTCCATGTGCG
CCAAGTGTGTCCGGGACAGGATCAAGCGGGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAA
AGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCAAAATAAATGGGCAGCTTTTTTAAGTAATAA
AAATCAAGACTTCGTCTACGGTTCCGTTA

hide sequence

RefSeq Acc Id:

XM_039102721 ⟹ XP_038958649

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	219,284,373 - 219,287,707 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102037	(Get FASTA)	NCBI Sequence Viewer
	XP_006233376	(Get FASTA)	NCBI Sequence Viewer
	XP_038958649	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67113	(Get FASTA)	NCBI Sequence Viewer
	EDL82204	(Get FASTA)	NCBI Sequence Viewer
	EDL82205	(Get FASTA)	NCBI Sequence Viewer
	P11250	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001102037 ⟸ NM_001108567
- UniProtKB:	B2RZD4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVL MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK hide sequence

RefSeq Acc Id:	XP_006233376 ⟸ XM_006233314
- Peptide Label:	isoform X1
- UniProtKB:	B2RZD4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVL MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK hide sequence

RefSeq Acc Id:

ENSRNOP00000009046 ⟸ ENSRNOT00000009046

RefSeq Acc Id:

ENSRNOP00000060949 ⟸ ENSRNOT00000005772

RefSeq Acc Id:	XP_038958649 ⟸ XM_039102721
- Peptide Label:	isoform X1
- UniProtKB:	B2RZD4 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P11250-F1-model_v2	AlphaFold	P11250	1-117	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309402	AgrOrtholog
BioCyc Gene	G2FUF-51222	BioCyc
Ensembl Genes	ENSRNOG00000016387	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009046	ENTREZGENE
	ENSRNOP00000009046.5	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009046	ENTREZGENE
	ENSRNOT00000009046.9	UniProtKB/TrEMBL
Gene3D-CATH	6.20.340.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	6.20.370.70	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6889959	IMAGE-MGC_LOAD
InterPro	Ribosomal_L34Ae	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L34e_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362041	UniProtKB/TrEMBL
MGC_CLONE	MGC:189576	IMAGE-MGC_LOAD
NCBI Gene	362041	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L34	UniProtKB/Swiss-Prot
	60S RIBOSOMAL PROTEIN L34	UniProtKB/Swiss-Prot
	60S RIBOSOMAL PROTEIN L34	UniProtKB/TrEMBL
	60S RIBOSOMAL PROTEIN L34	UniProtKB/TrEMBL
Pfam	Ribosomal_L34e	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rpl34	PhenoGen
PRINTS	RIBOSOMALL34	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L34E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	B2RZD4	ENTREZGENE, UniProtKB/TrEMBL
	P11250	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-29	Rpl34	ribosomal protein L34	Rpl34l2	ribosomal protein L34-like 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-01-23	Rpl34l2	ribosomal protein L34-like 2	Rpl34	ribosomal protein L34	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Rpl34	ribosomal protein L34	Rpl34_predicted	ribosomal protein L34 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Rpl34_predicted	ribosomal protein L34 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

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