Cenpt (centromere protein T) - Rat Genome Database

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Gene: Cenpt (centromere protein T) Rattus norvegicus
Analyze
Symbol: Cenpt
Name: centromere protein T
RGD ID: 1309383
Description: Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be involved in chromosome segregation; kinetochore assembly; and mitotic cell cycle. Predicted to be located in kinetochore and nuclear body. Orthologous to human CENPT (centromere protein T); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CENP-T; LOC307805; MGC112755; RGD1309383; similar to RIKEN cDNA G630055P03 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,734,684 - 33,741,159 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1933,734,685 - 33,741,142 (-)Ensembl
Rnor_6.01937,813,284 - 37,819,782 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,812,751 - 37,819,789 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,680,055 - 48,686,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,680,014 - 35,686,455 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11935,684,895 - 35,691,336 (-)NCBI
Celera1933,162,346 - 33,168,786 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome, centromeric region  (ISO,ISS)
kinetochore  (IEA,ISO)
nuclear body  (IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:21529714   PMID:21695110  


Genomics

Comparative Map Data
Cenpt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,734,684 - 33,741,159 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1933,734,685 - 33,741,142 (-)Ensembl
Rnor_6.01937,813,284 - 37,819,782 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,812,751 - 37,819,789 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,680,055 - 48,686,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,680,014 - 35,686,455 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11935,684,895 - 35,691,336 (-)NCBI
Celera1933,162,346 - 33,168,786 (-)NCBICelera
Cytogenetic Map19q12NCBI
CENPT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,828,157 - 67,847,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1667,828,157 - 67,847,811 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,862,060 - 67,881,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,419,561 - 66,438,862 (-)NCBINCBI36hg18NCBI36
Celera1652,370,476 - 52,389,773 (-)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1653,735,010 - 53,754,438 (-)NCBIHuRef
CHM1_11669,270,266 - 69,289,543 (-)NCBICHM1_1
T2T-CHM13v2.01673,623,939 - 73,643,467 (-)NCBI
Cenpt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,571,297 - 106,581,678 (-)NCBIGRCm39mm39
GRCm39 Ensembl8106,571,305 - 106,579,910 (-)Ensembl
GRCm388105,844,669 - 105,855,086 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,844,673 - 105,853,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,368,578 - 108,375,908 (-)NCBIGRCm37mm9NCBIm37
MGSCv368108,733,807 - 108,741,137 (-)NCBImm8
Celera8110,072,453 - 110,079,784 (-)NCBICelera
Cytogenetic Map8D3NCBI
Cenpt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,862,206 - 8,867,771 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,862,221 - 8,867,881 (+)NCBIChiLan1.0ChiLan1.0
CENPT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11667,557,661 - 67,565,267 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,557,661 - 67,564,735 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01648,169,892 - 48,177,559 (-)NCBIMhudiblu_PPA_v0panPan3
CENPT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,641,261 - 81,647,047 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,641,426 - 81,647,039 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,631,054 - 81,636,750 (+)NCBI
ROS_Cfam_1.0582,076,463 - 82,082,161 (+)NCBI
ROS_Cfam_1.0 Ensembl582,076,538 - 82,082,153 (+)Ensembl
UMICH_Zoey_3.1581,902,886 - 81,908,582 (+)NCBI
UNSW_CanFamBas_1.0581,584,471 - 81,590,166 (+)NCBI
UU_Cfam_GSD_1.0582,226,961 - 82,232,656 (+)NCBI
Cenpt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,384,099 - 41,390,488 (+)NCBI
SpeTri2.0NW_00493647518,198,725 - 18,204,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,450,569 - 28,456,229 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,450,568 - 28,456,620 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,668,564 - 25,682,398 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CENPT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,604,893 - 59,611,140 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl559,605,149 - 59,614,206 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604722,331,590 - 22,338,090 (+)NCBIVero_WHO_p1.0
Cenpt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,532,732 - 18,538,326 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474618,530,574 - 18,538,437 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
BF400842  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,737,714 - 33,737,913 (+)MAPPERmRatBN7.2
Rnor_6.01937,816,315 - 37,816,513NCBIRnor6.0
Rnor_5.01948,683,086 - 48,683,284UniSTSRnor5.0
RGSC_v3.41935,683,046 - 35,683,244UniSTSRGSC3.4
Celera1933,165,377 - 33,165,575UniSTS
RH 3.4 Map19276.21UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:75
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000036702
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 28 22 11 22 30 18 35
Low 1 11 19 11 8 11 4 4 31 11 6 11 4
Below cutoff 6 10 8 8 4 7 13 6 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000036702   ⟹   ENSRNOP00000029297
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,734,685 - 33,741,138 (-)Ensembl
Rnor_6.0 Ensembl1937,812,751 - 37,819,789 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108733   ⟹   ENSRNOP00000093818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,734,685 - 33,741,138 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117353   ⟹   ENSRNOP00000088660
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,734,685 - 33,741,142 (-)Ensembl
RefSeq Acc Id: NM_001024257   ⟹   NP_001019428
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,741,124 (-)NCBI
Rnor_6.01937,813,284 - 37,819,724 (-)NCBI
Rnor_5.01948,680,055 - 48,686,554 (-)NCBI
RGSC_v3.41935,680,014 - 35,686,455 (-)RGD
Celera1933,162,346 - 33,168,786 (-)RGD
Sequence:
RefSeq Acc Id: XM_006255494   ⟹   XP_006255556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,741,159 (-)NCBI
Rnor_6.01937,813,284 - 37,819,780 (-)NCBI
Rnor_5.01948,680,055 - 48,686,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097735   ⟹   XP_038953663
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,741,159 (-)NCBI
RefSeq Acc Id: XM_039097736   ⟹   XP_038953664
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,741,159 (-)NCBI
RefSeq Acc Id: XM_039097738   ⟹   XP_038953666
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,741,159 (-)NCBI
RefSeq Acc Id: XM_039097739   ⟹   XP_038953667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,739,349 (-)NCBI
RefSeq Acc Id: XM_039097740   ⟹   XP_038953668
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,741,144 (-)NCBI
RefSeq Acc Id: XM_039097741   ⟹   XP_038953669
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,736,803 - 33,741,159 (-)NCBI
RefSeq Acc Id: XR_005496655
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,734,684 - 33,741,159 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001019428   ⟸   NM_001024257
- UniProtKB: Q561R1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006255556   ⟸   XM_006255494
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000029297   ⟸   ENSRNOT00000036702
RefSeq Acc Id: XP_038953666   ⟸   XM_039097738
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038953664   ⟸   XM_039097736
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038953663   ⟸   XM_039097735
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953668   ⟸   XM_039097740
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038953667   ⟸   XM_039097739
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038953669   ⟸   XM_039097741
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000093818   ⟸   ENSRNOT00000108733
RefSeq Acc Id: ENSRNOP00000088660   ⟸   ENSRNOT00000117353

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q561R1-F1-model_v2 AlphaFold Q561R1 1-518 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701088
Promoter ID:EPDNEW_R11612
Type:multiple initiation site
Name:Cenpt_1
Description:centromere protein T
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,819,742 - 37,819,802EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 37815440 37815441 C T snv ACI/EurMcwi (MCW), WKY/N (2020), SBH/Ygl (MCW), SBN/Ygl (MCW), ACI/N (MCW), WKY/N (MCW), ACI/EurMcwi (RGD), GK/Ox (RGD), LE/Stm (RGD), SBH/Ygl (RGD), SBN/Ygl (RGD), SHR/NHsd (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), COP/CrCrl (MCW & UW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 48682211 48682212 C T snv ACI/EurMcwi (MCW), BDIX.Cg-Tal/NemOda (KyushuU), SBH/Ygl (MCW), SBN/Ygl (MCW), ACI/N (KNAW), ACI/EurMcwi (KNAW), DA/BklArbNsi (KNAW), GK/Ox (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), SBH/Ygl (KNAW), SBN/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), SDLEF7/Barth (UDEL), LE/Stm (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), COP/CrCrl (MCW & UW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 35682171 35682172 C T snv ACI/EurMcwi (MCW), DA/BklArbNsi (ICAHN), ACI/N (KNAW), LE/Stm (KNAW), WKY/N (KNAW), SHR/OlaIpcv (KNAW), COP/CrCrl (MCW & UW), ACI/EurMcwi (ICL), GK/Ox (ICL), LE/Stm (ICL), SBH/Ygl (ICL), SBN/Ygl (ICL), SHR/OlaIpcv (ICL), SHR/NHsd (ICL), WKY/NCrl (ICL), WKY/Gcrc (ICL), WKY/NHsd (ICL), LCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich), SHR/OlaIpcv (ICL)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 33736840 33736841 C T snv ACI/EurMcwi (2019), WKY/N (2020), DA/OlaHsd (2019), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), ACI/N (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309383 AgrOrtholog
BioCyc Gene G2FUF-5807 BioCyc
Ensembl Genes ENSRNOG00000024178 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029297 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000088660.1 UniProtKB/TrEMBL
  ENSRNOP00000093818.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036702 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000108733.1 UniProtKB/TrEMBL
  ENSRNOT00000117353.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7388929 IMAGE-MGC_LOAD
InterPro CENP-T UniProtKB/Swiss-Prot
  CENP-T/H4_C UniProtKB/Swiss-Prot
  CENP-T_N UniProtKB/Swiss-Prot
  Histone-fold UniProtKB/Swiss-Prot
KEGG Report rno:307805 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112755 IMAGE-MGC_LOAD
NCBI Gene 307805 ENTREZGENE
PANTHER PTHR46904 UniProtKB/Swiss-Prot
Pfam CENP-T_C UniProtKB/Swiss-Prot
  CENP-T_N UniProtKB/Swiss-Prot
PhenoGen Cenpt PhenoGen
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot
UniProt A0A8I6AA72_RAT UniProtKB/TrEMBL
  A0A8I6GKT8_RAT UniProtKB/TrEMBL
  CENPT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Cenpt  centromere protein T  RGD1309383  similar to RIKEN cDNA G630055P03 gene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309383  similar to RIKEN cDNA G630055P03 gene  RGD1309383_predicted  similar to RIKEN cDNA G630055P03 gene (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309383_predicted  similar to RIKEN cDNA G630055P03 gene (predicted)  LOC307805_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307805_predicted  similar to RIKEN cDNA G630055P03 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL