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Gene: Col8a1 (collagen type VIII alpha 1 chain) Rattus norvegicus
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Symbol: Col8a1
Name: collagen type VIII alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in several processes, including camera-type eye morphogenesis; endodermal cell differentiation; and positive regulation of cell-substrate adhesion. Predicted to localize to the extracellular matrix and extracellular space. Orthologous to human COL8A1 (collagen type VIII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2-amino-2-deoxy-D-glucopyranose; 6-propyl-2-thiouracil; aldehydo-D-glucosamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(VIII) chain; collagen, type VIII, alpha 1; LOC304021; procollagen, type VIII, alpha 1
Orthologs:
Homo sapiens (human) : COL8A1 (collagen type VIII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col8a1 (collagen, type VIII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col8a1 (collagen type VIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL8A1 (collagen type VIII alpha 1 chain)
Canis lupus familiaris (dog) : COL8A1 (collagen type VIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col8a1 (collagen type VIII alpha 1 chain)
Sus scrofa (pig) : COL8A1 (collagen type VIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01144,877,690 - 45,006,203 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,877,859 - 45,007,891 (+)Ensembl
Rnor_5.01148,073,158 - 48,201,421 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,604,994 - 43,733,870 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11143,785,922 - 43,791,642 (+)NCBI
Celera1142,573,892 - 42,702,340 (+)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col8a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309361
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.