Col8a1 (collagen type VIII alpha 1 chain)

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Gene: Col8a1 (collagen type VIII alpha 1 chain) Rattus norvegicus

Analyze

Symbol:

Col8a1

Name:

collagen type VIII alpha 1 chain

RGD ID:

1309361

Description:

Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in endodermal cell differentiation and extracellular matrix organization. Predicted to act upstream of or within camera-type eye morphogenesis; endothelial cell proliferation; and positive regulation of cell-substrate adhesion. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human COL8A1 (collagen type VIII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-amino-2-deoxy-D-glucopyranose; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

collagen alpha-1(VIII) chain; collagen, type VIII, alpha 1; LOC304021; procollagen, type VIII, alpha 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	42,776,851 - 42,906,432 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	42,777,628 - 42,906,424 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	51,533,937 - 51,662,714 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	44,195,524 - 44,324,293 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	43,324,116 - 43,452,883 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	44,877,690 - 45,006,203 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	44,877,859 - 45,007,891 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	48,073,158 - 48,201,421 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	43,604,994 - 43,733,870 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	43,785,922 - 43,791,642 (+)	NCBI
Celera	11	42,573,892 - 42,702,340 (+)	NCBI		Celera
Cytogenetic Map	11	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Congenital Abnormalities (ISO)

diastolic heart failure (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-amino-2-deoxy-D-glucopyranose (EXP)

3,4-dichloroaniline (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP,ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucosamine (EXP)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-D-glucosamine (EXP)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylparaben (ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

calcitriol (ISO)

calcium dichloride (ISO)

CGP 52608 (ISO)

choline (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

dextran sulfate (ISO)

diallyl trisulfide (ISO)

diazinon (EXP)

Didecyldimethylammonium (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

geldanamycin (ISO)

genistein (ISO)

glycidol (EXP)

indometacin (ISO)

L-methionine (ISO)

lead diacetate (EXP)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

mercury dibromide (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methylparaben (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

permethrin (ISO)

phenylmercury acetate (ISO)

phorbol 13-acetate 12-myristate (ISO)

phthalaldehyde (ISO)

poly(vinylpyrrolidone) (EXP)

potassium chromate (ISO)

potassium dichromate (ISO)

progesterone (ISO)

Rebamipide (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (EXP)

silver(0) (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triclosan (ISO)

trimellitic anhydride (ISO)

triticonazole (EXP)

troglitazone (ISO)

valproic acid (ISO)

vancomycin (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

camera-type eye morphogenesis (ISO)

endodermal cell differentiation (ISO)

endothelial cell proliferation (ISO)

extracellular matrix organization (IBA)

positive regulation of cell-substrate adhesion (ISO)

Cellular Component

collagen-containing extracellular matrix (IBA)

extracellular space (IBA)

Molecular Function

extracellular matrix structural constituent conferring tensile strength (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

syndecan signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16051690	PMID:18757743	PMID:19168440	PMID:20551380	PMID:23154389	PMID:23376485	PMID:23979707	PMID:24006456	PMID:27068509	PMID:27559042	PMID:30361391

Genomics

Comparative Map Data

Col8a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	42,776,851 - 42,906,432 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	42,777,628 - 42,906,424 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	51,533,937 - 51,662,714 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	44,195,524 - 44,324,293 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	43,324,116 - 43,452,883 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	44,877,690 - 45,006,203 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	44,877,859 - 45,007,891 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	48,073,158 - 48,201,421 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	43,604,994 - 43,733,870 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	43,785,922 - 43,791,642 (+)	NCBI
Celera	11	42,573,892 - 42,702,340 (+)	NCBI		Celera
Cytogenetic Map	11	q12	NCBI

COL8A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	99,638,594 - 99,799,217 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	99,638,475 - 99,799,226 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	99,357,438 - 99,518,061 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	100,840,144 - 100,997,848 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	100,840,143 - 100,997,848	NCBI
Celera	3	97,746,575 - 97,904,287 (+)	NCBI		Celera
Cytogenetic Map	3	q12.1	NCBI
HuRef	3	96,725,773 - 96,884,050 (+)	NCBI		HuRef
CHM1_1	3	99,320,440 - 99,478,624 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	102,343,632 - 102,504,274 (+)	NCBI		T2T-CHM13v2.0

Col8a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	57,444,619 - 57,575,100 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	57,444,621 - 57,575,100 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	57,624,256 - 57,754,737 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	57,624,258 - 57,754,737 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	57,624,369 - 57,754,850 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	57,548,056 - 57,553,783 (-)	NCBI		MGSCv36	mm8
Celera	16	57,949,273 - 58,079,512 (-)	NCBI		Celera
Cytogenetic Map	16	C1.1	NCBI
cM Map	16	34.22	NCBI

Col8a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	1,187,550 - 1,335,794 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	1,187,550 - 1,335,794 (+)	NCBI	ChiLan1.0	ChiLan1.0

COL8A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	3	97,589,413 - 97,749,735 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	96,732,445 - 96,892,726 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	103,416,557 - 103,573,617 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	103,521,159 - 103,573,617 (+)	Ensembl	panpan1.1		panPan2

COL8A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	6,285,742 - 6,428,172 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	6,285,415 - 6,425,414 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1

Col8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	150,545,175 - 150,692,760 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936630	3,443,068 - 3,590,516 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936630	3,443,085 - 3,590,430 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL8A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	159,216,144 - 159,374,576 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	159,216,138 - 159,374,718 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	169,086,122 - 169,094,141 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL8A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	81,094,127 - 81,242,801 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	81,091,493 - 81,242,763 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	85,334,932 - 85,484,882 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col8a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624789	12,962,144 - 13,130,492 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Col8a1
505 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	14
Count of miRNA genes:	9
Interacting mature miRNAs:	14
Transcripts:	ENSRNOT00000060838
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
1641927	Alcrsp10	Alcohol response QTL 10			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	11	8436674	53436674	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	16472047	44285911	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	22959403	67959403	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	23280456	68280456	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	23280456	68280456	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	27672410	82846715	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	29528418	60324829	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	29528418	82566702	Rat
2298551	Neuinf10	Neuroinflammation QTL 10	3.7		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	11	31239134	78851519	Rat
70180	BpQTLcluster10	Blood pressure QTL cluster 10	3.19		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	11	34918041	79918041	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	40946188	82566702	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		1			1						1
Low	3	42	37	21	18	21	8	11	72	35	33	11	8
Below cutoff			12	12		12			2		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000060838 ⟹ ENSRNOP00000057564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	42,777,628 - 42,906,424 (+)	Ensembl
Rnor_6.0 Ensembl	11	44,877,859 - 45,007,891 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113782 ⟹ ENSRNOP00000089355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	42,777,628 - 42,906,255 (+)	Ensembl

RefSeq Acc Id:

NM_001107100 ⟹ NP_001100570

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	42,777,628 - 42,906,255 (+)	NCBI
Rnor_6.0	11	44,877,918 - 45,006,052 (+)	NCBI
Rnor_5.0	11	48,073,158 - 48,201,421 (+)	NCBI
RGSC_v3.4	11	43,604,994 - 43,733,870 (+)	RGD
Celera	11	42,573,892 - 42,702,340 (+)	RGD

Sequence:

show sequence

GCGCAGAGGATCAGAGCCCTTCCACGGTCCTCTCCGTGGGAGCCCAAGTCCCTGTCTCCCAGAT
CTTACATGCTCAAGAAGCTGTTCTGTAAATAAAGTAAACCCTGTGAAGAGACGGGACCCAGCCC
CATTGGTATTACAAGAAGAGTCAAACAAGGACTTTGGTCCTCAATTCTACTGGCCAGCCAAGCC
TAAATGTGATGGCTGTGCCACCCAGGCCTCTACAGCTGCTGGGAATACTGTTCATCCTTTCCCT
GAGCTCCGTCAGACTCGCTCAGGCCGGTGCCTACTATGGAATCAAGCCTCTGCCACCTCAAATC
CCTCCTCAGATACCACCACAAATTCCACAGTACCAGCCCTTGGGCCAGCAAGTACCTCATATGC
CTTTGGGCAAGGATGGCCTTTCCATGGGCAAGGAGATGCCCCACATGCAGTATGGCAAAGAGTA
CCCACACCTACCCCAGTATATGAAGGAAATCCAACCTGTGCCAAGAGTGGGCAAGGAAGTGGTG
CCCAAAAAAGGCAAAGAAATACCATTAGCCAGTTTGCGAGGAGAACAAGGTCCCCGTGGAGAAC
CTGGACCAAGAGGACCACCTGGGCCACCAGGTTTGCCAGGTCACGGAATGCCTGGAATCAAAGG
AAAGCCAGGGCCCCAGGGATACCCAGGGATTGGAAAGCCGGGTATGCCTGGAATGCCTGGGAAG
CCAGGAGCCATGGGAATGCCGGGGGCAAAAGGCGAAATTGGACCCAAAGGGGAAATCGGACCTA
TGGGAATCCCAGGGCCACAAGGACCTCCAGGACCCCATGGACTTCCTGGCATTGGGAAACCGGG
TGGGCCAGGGTTACCAGGGCAACCAGGAGCAAAAGGTGAGAGAGGGCCCAAAGGACCACCAGGA
CCTCCCGGCCTACAGGGTCCCAAAGGAGAGAAGGGCTTCGGGATGCCTGGCTTGCCGGGTCTCA
AGGGTCCGCCAGGTATGCATGGCCCTCCTGGCCCAGTTGGGCTACCAGGAGTAGGAAAACCAGG
AGTGACTGGCTTTCCTGGACCCCAGGGTCCCTTGGGGAAGCCAGGGCCTCCAGGGGAACCTGGA
CCACAAGGCCTTATTGGTGTGCCAGGCGTTCAAGGACCTCCTGGGATGCCTGGAGTTGGAAAGC
CAGGTCAGGATGGGATCCCTGGCCAACCAGGATTTCCAGGTGGTAAAGGGGAACAGGGATTACC
AGGGTTGCCTGGACCCCCAGGCCTCCCAGGGGTCGGAAAACCAGGCTTCCCAGGACCCAAAGGG
GACCGGGGTATTGGGGGTGTTCCTGGGGCTCTTGGGCCAAGGGGAGAAAAGGGGCCAGTAGGTG
CTCCTGGAATAGGGGGTCCCCCTGGAGAGCCAGGCCTACCCGGAATTCCAGGTCCCATGGGCCC
TCCAGGAGCTATTGGTTTCCCTGGACCCAAAGGAGAAGGTGGAATTGTAGGACCACAGGGTCCA
CCAGGTCCCAAGGGAGAGCCAGGCCTCCAGGGCTTCCCTGGGAAGCCAGGTTTTCTTGGTGAAG
TAGGTCCCCCTGGCATGAGGGGTTTGCCCGGTCCTATAGGACCCAAGGGAGAAGCTGGTCACAA
AGGATTGCCTGGACTTCCTGGTGTTCCAGGGCTGCTTGGACCCAAAGGAGAACCTGGCATACCC
GGGGATCAGGGTCTACAGGGGCCCCCAGGTATTCCAGGGATTGCGGGACCTAGTGGCCCTATTG
GACCCCCTGGGATTCCAGGCCCCAAAGGAGAACCAGGCCTCCCAGGGCCCCCTGGGTTCCCTGG
TGTAGGGAAGCCAGGAGTAGCAGGACTTCATGGTCCCCCGGGGAAACCTGGTGCCCTTGGACCT
CAAGGCCAACCTGGCCTTCCTGGGCCACCAGGCCCTCCAGGCCCCCCAGGCCCCCCAGCTGTGA
TGCCCCCTACACCATCACCCCAGGGAGAGTATCTACCAGATATGGGACTAGGAATTGATGGAGT
GAAGCCTCCACATGCCTATGCGGGCAAAAAGGGCAAGAACGGAGGGCCCTATGAGATGCCCGCG
TTTACTGCCGAGCTGACTGTACCTTTCCCACCGGTGGGGGCCCCAGTGAAGTTTGACAAGCTCC
TATACAATGGAAGACAGAACTACAACCCGCAGACGGGAGTCTTCACCTGCGAAGTCCCGGGTGT
CTACTACTTTGCTTACCATGTTCACTGCAAGGGAGGCAACGTCTGGGTTGCTCTCTTCAAGAAC
AACGAGCCCATGATGTACACATACGACGAGTACAAGAAGGGCTTTCTGGACCAGGCATCTGGAA
GCGCAGTACTGCTGCTCCGGCCCGGAGACCGGGTGTTCCTCCAAATGCCTTCAGAACAGGCTGC
TGGACTCTATGCTGGGCAATATGTCCACTCCTCCTTTTCAGGATATTTATTGTATCCCATGTAA

hide sequence

RefSeq Acc Id:

XM_006248208 ⟹ XP_006248270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	42,776,851 - 42,906,432 (+)	NCBI
Rnor_6.0	11	44,877,690 - 45,006,203 (+)	NCBI
Rnor_5.0	11	48,073,158 - 48,201,421 (+)	NCBI

Sequence:

show sequence

CTTTCTCTACTCTCCCGCCTTGTTTCCACTCCAGTCTCCTCTCCGCCGCCCTCCAAAGTCCCTG
GCTCTCCCCACTCCTGCAAGCTCTACCCTTTCTGCCCCTCCCCAGACAAGTGTCCAGCTCCACG
GGGGCAGCCCGCCCGCCGCCCTGCTCTATCCCTGCCCACCTACTGTGAGGAGCAGCTCCGCCCA
CCTGTCCATAAAAGCCAAGTGCAAGTTACCCGCAGAGCGCAGAGGATCAGAGCCCTTCCACGGT
CCTCTCCGTGGGAGCCCAAGTCCCTGTCTCCCAGATCTTACATGCTCAAGAAGCTGTTCTGTAA
ATAAAGTAAACCCTGTGAAGAGACGGGACCCAGCCCCATTGGTATTACAAGAAGAGTCAAACAA
GGACTTTGGTCCTCAATTCTACTGGCCAGCCAAGCCTAAATGTGATGGCTGTGCCACCCAGGCC
TCTACAGCTGCTGGGAATACTGTTCATCCTTTCCCTGAGCTCCGTCAGACTCGCTCAGGCCGGT
GCCTACTATGGAATCAAGCCTCTGCCACCTCAAATCCCTCCTCAGATACCACCACAAATTCCAC
AGTACCAGCCCTTGGGCCAGCAAGTACCTCATATGCCTTTGGGCAAGGATGGCCTTTCCATGGG
CAAGGAGATGCCCCACATGCAGTATGGCAAAGAGTACCCACACCTACCCCAGTATATGAAGGAA
ATCCAACCTGTGCCAAGAGTGGGCAAGGAAGTGGTGCCCAAAAAAGGCAAAGGAGAAATACCAT
TAGCCAGTTTGCGAGGAGAACAAGGTCCCCGTGGAGAACCTGGACCAAGAGGACCACCTGGGCC
ACCAGGTTTGCCAGGTCACGGAATGCCTGGAATCAAAGGAAAGCCAGGGCCCCAGGGATACCCA
GGGATTGGAAAGCCGGGTATGCCTGGAATGCCTGGGAAGCCAGGAGCCATGGGAATGCCGGGGG
CAAAAGGCGAAATTGGACCCAAAGGGGAAATCGGACCTATGGGAATCCCAGGGCCACAAGGACC
TCCAGGACCCCATGGACTTCCTGGCATTGGGAAACCGGGTGGGCCAGGGTTACCAGGGCAACCA
GGAGCAAAAGGTGAGAGAGGGCCCAAAGGACCACCAGGACCTCCCGGCCTACAGGGTCCCAAAG
GAGAGAAGGGCTTCGGGATGCCTGGCTTGCCGGGTCTCAAGGGTCCGCCAGGTATGCATGGCCC
TCCTGGCCCAGTTGGGCTACCAGGAGTAGGAAAACCAGGAGTGACTGGCTTTCCTGGACCCCAG
GGTCCCTTGGGGAAGCCAGGGCCTCCAGGGGAACCTGGACCACAAGGCCTTATTGGTGTGCCAG
GCGTTCAAGGACCTCCTGGGATGCCTGGAGTTGGAAAGCCAGGTCAGGATGGGATCCCTGGCCA
ACCAGGATTTCCAGGTGGTAAAGGGGAACAGGGATTACCAGGGTTGCCTGGACCCCCAGGCCTC
CCAGGGGTCGGAAAACCAGGCTTCCCAGGACCCAAAGGGGACCGGGGTATTGGGGGTGTTCCTG
GGGCTCTTGGGCCAAGGGGAGAAAAGGGGCCAGTAGGTGCTCCTGGAATAGGGGGTCCCCCTGG
AGAGCCAGGCCTACCCGGAATTCCAGGTCCCATGGGCCCTCCAGGAGCTATTGGTTTCCCTGGA
CCCAAAGGAGAAGGTGGAATTGTAGGACCACAGGGTCCACCAGGTCCCAAGGGAGAGCCAGGCC
TCCAGGGCTTCCCTGGGAAGCCAGGTTTTCTTGGTGAAGTAGGTCCCCCTGGCATGAGGGGTTT
GCCCGGTCCTATAGGACCCAAGGGAGAAGCTGGTCACAAAGGATTGCCTGGACTTCCTGGTGTT
CCAGGGCTGCTTGGACCCAAAGGAGAACCTGGCATACCCGGGGATCAGGGTCTACAGGGGCCCC
CAGGTATTCCAGGGATTGCGGGACCTAGTGGCCCTATTGGACCCCCTGGGATTCCAGGCCCCAA
AGGAGAACCAGGCCTCCCAGGGCCCCCTGGGTTCCCTGGTGTAGGGAAGCCAGGAGTAGCAGGA
CTTCATGGTCCCCCGGGGAAACCTGGTGCCCTTGGACCTCAAGGCCAACCTGGCCTTCCTGGGC
CACCAGGCCCTCCAGGCCCCCCAGGCCCCCCAGCTGTGATGCCCCCTACACCATCACCCCAGGG
AGAGTATCTACCAGATATGGGACTAGGAATTGATGGAGTGAAGCCTCCACATGCCTATGCGGGC
AAAAAGGGCAAGAACGGAGGGCCCTATGAGATGCCCGCGTTTACTGCCGAGCTGACTGTACCTT
TCCCACCGGTGGGGGCCCCAGTGAAGTTTGACAAGCTCCTATACAATGGAAGACAGAACTACAA
CCCGCAGACGGGAGTCTTCACCTGCGAAGTCCCGGGTGTCTACTACTTTGCTTACCATGTTCAC
TGCAAGGGAGGCAACGTCTGGGTTGCTCTCTTCAAGAACAACGAGCCCATGATGTACACATACG
ACGAGTACAAGAAGGGCTTTCTGGACCAGGCATCTGGAAGCGCAGTACTGCTGCTCCGGCCCGG
AGACCGGGTGTTCCTCCAAATGCCTTCAGAACAGGCTGCTGGACTCTATGCTGGGCAATATGTC
CACTCCTCCTTTTCAGGATATTTATTGTATCCCATGTAAAAAAAAAATAAGGAAAGGAAAATAA
TTAAGAGATTTAATAGAAGAAAAGAAAATGACACACCAAAAAAAAAAATCCATTTGAAAACAAT
GCTTCGAAACATTTATAGTAGTTGGAAAGTTATATTTAAGTGAAAGTTTGGACCATCATGTA

hide sequence

RefSeq Acc Id:

XM_017598011 ⟹ XP_017453500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	42,776,915 - 42,906,432 (+)	NCBI
Rnor_6.0	11	44,877,690 - 45,006,203 (+)	NCBI

Sequence:

show sequence

CTTTCTCTACTCTCCCGCCTTGTTTCCACTCCAGTCTCCTCTCCGCCGCCCTCCAAAGTCCCTG
GCTCTCCCCACTCCTGCAAGCTCTACCCTTTCTGCCCCTCCCCAGACAAGTGTCCAGCTCCACG
GGGGCAGCCCGCCCGCCGCCCTGCTCTATCCCTGCCCACCTACTGTGAGGAGCAGCTCCGCCCA
CCTGTCCATAAAAGCCAAGTGCAAGTTACCCGCAGAGCGCAGAGGATCAGAGCCCTTCCACGGT
CCTCTCCGTGGGAGCCCAAGTCCCTGTCTCCCAGATCTTACATGCTCAAGAAGCTGTTCTGTAA
ATAAAGTAAACCCTGTGAAGAGACGGGACCCAGCCCCATTGGTATTACAAGAAGAGTCAAACAA
GGACTTTGGTCCTCAATTCTACTGGCCAGCCAAGCCTAAATGTATTTATGACAACCATAAGCGT
CCAGAAAAACATTTAACAGGTGATGGCTGTGCCACCCAGGCCTCTACAGCTGCTGGGAATACTG
TTCATCCTTTCCCTGAGCTCCGTCAGACTCGCTCAGGCCGGTGCCTACTATGGAATCAAGCCTC
TGCCACCTCAAATCCCTCCTCAGATACCACCACAAATTCCACAGTACCAGCCCTTGGGCCAGCA
AGTACCTCATATGCCTTTGGGCAAGGATGGCCTTTCCATGGGCAAGGAGATGCCCCACATGCAG
TATGGCAAAGAGTACCCACACCTACCCCAGTATATGAAGGAAATCCAACCTGTGCCAAGAGTGG
GCAAGGAAGTGGTGCCCAAAAAAGGCAAAGGAGAAATACCATTAGCCAGTTTGCGAGGAGAACA
AGGTCCCCGTGGAGAACCTGGACCAAGAGGACCACCTGGGCCACCAGGTTTGCCAGGTCACGGA
ATGCCTGGAATCAAAGGAAAGCCAGGGCCCCAGGGATACCCAGGGATTGGAAAGCCGGGTATGC
CTGGAATGCCTGGGAAGCCAGGAGCCATGGGAATGCCGGGGGCAAAAGGCGAAATTGGACCCAA
AGGGGAAATCGGACCTATGGGAATCCCAGGGCCACAAGGACCTCCAGGACCCCATGGACTTCCT
GGCATTGGGAAACCGGGTGGGCCAGGGTTACCAGGGCAACCAGGAGCAAAAGGTGAGAGAGGGC
CCAAAGGACCACCAGGACCTCCCGGCCTACAGGGTCCCAAAGGAGAGAAGGGCTTCGGGATGCC
TGGCTTGCCGGGTCTCAAGGGTCCGCCAGGTATGCATGGCCCTCCTGGCCCAGTTGGGCTACCA
GGAGTAGGAAAACCAGGAGTGACTGGCTTTCCTGGACCCCAGGGTCCCTTGGGGAAGCCAGGGC
CTCCAGGGGAACCTGGACCACAAGGCCTTATTGGTGTGCCAGGCGTTCAAGGACCTCCTGGGAT
GCCTGGAGTTGGAAAGCCAGGTCAGGATGGGATCCCTGGCCAACCAGGATTTCCAGGTGGTAAA
GGGGAACAGGGATTACCAGGGTTGCCTGGACCCCCAGGCCTCCCAGGGGTCGGAAAACCAGGCT
TCCCAGGACCCAAAGGGGACCGGGGTATTGGGGGTGTTCCTGGGGCTCTTGGGCCAAGGGGAGA
AAAGGGGCCAGTAGGTGCTCCTGGAATAGGGGGTCCCCCTGGAGAGCCAGGCCTACCCGGAATT
CCAGGTCCCATGGGCCCTCCAGGAGCTATTGGTTTCCCTGGACCCAAAGGAGAAGGTGGAATTG
TAGGACCACAGGGTCCACCAGGTCCCAAGGGAGAGCCAGGCCTCCAGGGCTTCCCTGGGAAGCC
AGGTTTTCTTGGTGAAGTAGGTCCCCCTGGCATGAGGGGTTTGCCCGGTCCTATAGGACCCAAG
GGAGAAGCTGGTCACAAAGGATTGCCTGGACTTCCTGGTGTTCCAGGGCTGCTTGGACCCAAAG
GAGAACCTGGCATACCCGGGGATCAGGGTCTACAGGGGCCCCCAGGTATTCCAGGGATTGCGGG
ACCTAGTGGCCCTATTGGACCCCCTGGGATTCCAGGCCCCAAAGGAGAACCAGGCCTCCCAGGG
CCCCCTGGGTTCCCTGGTGTAGGGAAGCCAGGAGTAGCAGGACTTCATGGTCCCCCGGGGAAAC
CTGGTGCCCTTGGACCTCAAGGCCAACCTGGCCTTCCTGGGCCACCAGGCCCTCCAGGCCCCCC
AGGCCCCCCAGCTGTGATGCCCCCTACACCATCACCCCAGGGAGAGTATCTACCAGATATGGGA
CTAGGAATTGATGGAGTGAAGCCTCCACATGCCTATGCGGGCAAAAAGGGCAAGAACGGAGGGC
CCTATGAGATGCCCGCGTTTACTGCCGAGCTGACTGTACCTTTCCCACCGGTGGGGGCCCCAGT
GAAGTTTGACAAGCTCCTATACAATGGAAGACAGAACTACAACCCGCAGACGGGAGTCTTCACC
TGCGAAGTCCCGGGTGTCTACTACTTTGCTTACCATGTTCACTGCAAGGGAGGCAACGTCTGGG
TTGCTCTCTTCAAGAACAACGAGCCCATGATGTACACATACGACGAGTACAAGAAGGGCTTTCT
GGACCAGGCATCTGGAAGCGCAGTACTGCTGCTCCGGCCCGGAGACCGGGTGTTCCTCCAAATG
CCTTCAGAACAGGCTGCTGGACTCTATGCTGGGCAATATGTCCACTCCTCCTTTTCAGGATATT
TATTGTATCCCATGTAAAAAAAAAATAAGGAAAGGAAAATAATTAAGAGATTTAATAGAAGAAA
AGAAAATGACACACCAAAAAAAAAAATCCATTTGAAAACAATGCTTCGAAACATTTATAGTAGT
TGGAAAGTTATATTTAAGTGAAAGTTTGGACCATCATGTA

hide sequence

RefSeq Acc Id:

XM_039088381 ⟹ XP_038944309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	42,776,914 - 42,906,432 (+)	NCBI

RefSeq Acc Id:

XM_039088382 ⟹ XP_038944310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	42,776,914 - 42,906,432 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100570	(Get FASTA)	NCBI Sequence Viewer
	XP_006248270	(Get FASTA)	NCBI Sequence Viewer
	XP_017453500	(Get FASTA)	NCBI Sequence Viewer
	XP_038944309	(Get FASTA)	NCBI Sequence Viewer
	XP_038944310	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11025	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001100570 ⟸ NM_001107100
- Peptide Label:	precursor
- UniProtKB:	A0A8I6AA24 (UniProtKB/TrEMBL), A6IQM2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVPPRPLQLLGILFILSLSSVRLAQAGAYYGIKPLPPQIPPQIPPQIPQYQPLGQQVPHMPLG KDGLSMGKEMPHMQYGKEYPHLPQYMKEIQPVPRVGKEVVPKKGKEIPLASLRGEQGPRGEPGP RGPPGPPGLPGHGMPGIKGKPGPQGYPGIGKPGMPGMPGKPGAMGMPGAKGEIGPKGEIGPMGI PGPQGPPGPHGLPGIGKPGGPGLPGQPGAKGERGPKGPPGPPGLQGPKGEKGFGMPGLPGLKGP PGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGPPGEPGPQGLIGVPGVQGPPGMPGVGKPGQ DGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGGVPGALGPRGEKGPVGAPG IGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGP PGMRGLPGPIGPKGEAGHKGLPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIAGPSGPIGPP GIPGPKGEPGLPGPPGFPGVGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPP TPSPQGEYLPDMGLGIDGVKPPHAYAGKKGKNGGPYEMPAFTAELTVPFPPVGAPVKFDKLLYN GRQNYNPQTGVFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAV LLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM hide sequence

RefSeq Acc Id:	XP_006248270 ⟸ XM_006248208
- Peptide Label:	isoform X1
- UniProtKB:	D4AC70 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVPPRPLQLLGILFILSLSSVRLAQAGAYYGIKPLPPQIPPQIPPQIPQYQPLGQQVPHMPLG KDGLSMGKEMPHMQYGKEYPHLPQYMKEIQPVPRVGKEVVPKKGKGEIPLASLRGEQGPRGEPG PRGPPGPPGLPGHGMPGIKGKPGPQGYPGIGKPGMPGMPGKPGAMGMPGAKGEIGPKGEIGPMG IPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKGERGPKGPPGPPGLQGPKGEKGFGMPGLPGLKG PPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGPPGEPGPQGLIGVPGVQGPPGMPGVGKPG QDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGGVPGALGPRGEKGPVGAP GIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVG PPGMRGLPGPIGPKGEAGHKGLPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIAGPSGPIGP PGIPGPKGEPGLPGPPGFPGVGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMP PTPSPQGEYLPDMGLGIDGVKPPHAYAGKKGKNGGPYEMPAFTAELTVPFPPVGAPVKFDKLLY NGRQNYNPQTGVFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSA VLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM hide sequence

RefSeq Acc Id:	XP_017453500 ⟸ XM_017598011
- Peptide Label:	isoform X1
- UniProtKB:	D4AC70 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVPPRPLQLLGILFILSLSSVRLAQAGAYYGIKPLPPQIPPQIPPQIPQYQPLGQQVPHMPLG KDGLSMGKEMPHMQYGKEYPHLPQYMKEIQPVPRVGKEVVPKKGKGEIPLASLRGEQGPRGEPG PRGPPGPPGLPGHGMPGIKGKPGPQGYPGIGKPGMPGMPGKPGAMGMPGAKGEIGPKGEIGPMG IPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKGERGPKGPPGPPGLQGPKGEKGFGMPGLPGLKG PPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGPPGEPGPQGLIGVPGVQGPPGMPGVGKPG QDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGGVPGALGPRGEKGPVGAP GIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVG PPGMRGLPGPIGPKGEAGHKGLPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIAGPSGPIGP PGIPGPKGEPGLPGPPGFPGVGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMP PTPSPQGEYLPDMGLGIDGVKPPHAYAGKKGKNGGPYEMPAFTAELTVPFPPVGAPVKFDKLLY NGRQNYNPQTGVFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSA VLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM hide sequence

RefSeq Acc Id:

ENSRNOP00000057564 ⟸ ENSRNOT00000060838

RefSeq Acc Id:	XP_038944309 ⟸ XM_039088381
- Peptide Label:	isoform X1
- UniProtKB:	D4AC70 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944310 ⟸ XM_039088382
- Peptide Label:	isoform X1
- UniProtKB:	D4AC70 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000089355 ⟸ ENSRNOT00000113782

Protein Domains

C1q

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AC70-F1-model_v2	AlphaFold	D4AC70	1-744	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309361	AgrOrtholog
BioCyc Gene	G2FUF-21547	BioCyc
Ensembl Genes	ENSRNOG00000039668	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000057564	ENTREZGENE
	ENSRNOP00000057564.4	UniProtKB/TrEMBL
	ENSRNOP00000089355	ENTREZGENE
	ENSRNOP00000089355.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000060838	ENTREZGENE
	ENSRNOT00000060838.5	UniProtKB/TrEMBL
	ENSRNOT00000113782	ENTREZGENE
	ENSRNOT00000113782.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.40	UniProtKB/TrEMBL
InterPro	C1q	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	Tumour_necrosis_fac-like	UniProtKB/TrEMBL
KEGG Report	rno:304021	UniProtKB/TrEMBL
NCBI Gene	304021	ENTREZGENE
PANTHER	COLLAGEN ALPHA	UniProtKB/TrEMBL
	COLLAGEN ALPHA-1(IV) CHAIN	UniProtKB/TrEMBL
	COLLAGEN ALPHA-2(IV) CHAIN	UniProtKB/TrEMBL
Pfam	C1q	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
PhenoGen	Col8a1	PhenoGen
PRINTS	COMPLEMNTC1Q	UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/TrEMBL
SMART	C1Q	UniProtKB/TrEMBL
Superfamily-SCOP	TNF_like	UniProtKB/TrEMBL
UniProt	A0A8I6AA24	ENTREZGENE, UniProtKB/TrEMBL
	A6IQM2	ENTREZGENE, UniProtKB/TrEMBL
	D4AC70	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-27	Col8a1	collagen type VIII alpha 1 chain	Col8a1	collagen, type VIII, alpha 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-25	Col8a1	collagen, type VIII, alpha 1	Col8a1_predicted	procollagen, type VIII, alpha 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Col8a1_predicted	procollagen, type VIII, alpha 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)