Rnf10 (ring finger protein 10) - Rat Genome Database

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Gene: Rnf10 (ring finger protein 10) Rattus norvegicus
Analyze
Symbol: Rnf10
Name: ring finger protein 10
RGD ID: 1309282
Description: Enables transcription cis-regulatory region binding activity. Involved in positive regulation of transcription by RNA polymerase II; postsynapse to nucleus signaling pathway; and regulation of nervous system development. Located in nucleus. Is active in glutamatergic synapse. Is extrinsic component of postsynaptic density membrane. Orthologous to human RNF10 (ring finger protein 10); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC288710
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,341,717 - 41,375,505 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,341,717 - 41,375,504 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,508,613 - 42,542,554 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01243,122,279 - 43,156,219 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01242,182,832 - 42,216,776 (+)NCBIRnor_WKY
Rnor_6.01247,103,313 - 47,137,096 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,103,314 - 47,138,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,896,967 - 48,930,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,609,879 - 42,643,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,473,266 - 42,507,049 (+)NCBI
Celera1242,961,374 - 42,995,153 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Ring finger protein 10 is a novel synaptonuclear messenger encoding activation of NMDA receptors in hippocampus. Dinamarca MC, etal., Elife. 2016 Mar 15;5:e12430. doi: 10.7554/eLife.12430.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A novel function of RING finger protein 10 in transcriptional regulation of the myelin-associated glycoprotein gene and myelin formation in Schwann cells. Hoshikawa S, etal., PLoS One. 2008;3(10):e3464. doi: 10.1371/journal.pone.0003464. Epub 2008 Oct 21.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16335786   PMID:24105792   PMID:29723537   PMID:31069631   PMID:31173254  


Genomics

Comparative Map Data
Rnf10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,341,717 - 41,375,505 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,341,717 - 41,375,504 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,508,613 - 42,542,554 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01243,122,279 - 43,156,219 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01242,182,832 - 42,216,776 (+)NCBIRnor_WKY
Rnor_6.01247,103,313 - 47,137,096 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,103,314 - 47,138,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,896,967 - 48,930,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,609,879 - 42,643,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,473,266 - 42,507,049 (+)NCBI
Celera1242,961,374 - 42,995,153 (+)NCBICelera
Cytogenetic Map12q16NCBI
RNF10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,534,356 - 120,577,588 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12120,533,480 - 120,577,588 (+)EnsemblGRCh38hg38GRCh38
GRCh3712120,972,159 - 121,015,391 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,456,515 - 119,499,780 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412119,434,874 - 119,478,077NCBI
Celera12120,606,443 - 120,649,686 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12117,981,628 - 118,024,812 (+)NCBIHuRef
CHM1_112120,940,932 - 120,984,162 (+)NCBICHM1_1
T2T-CHM13v2.012120,523,536 - 120,566,717 (+)NCBIT2T-CHM13v2.0
Rnf10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,379,829 - 115,410,980 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,379,471 - 115,410,957 (-)EnsemblGRCm39 Ensembl
GRCm385115,241,770 - 115,272,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,241,412 - 115,272,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv375115,691,779 - 115,722,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,502,770 - 115,533,893 (-)NCBIMGSCv36mm8
Celera5112,340,985 - 112,370,451 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.01NCBI
Rnf10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,074,344 - 11,119,752 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,074,118 - 11,119,771 (-)NCBIChiLan1.0ChiLan1.0
RNF10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112121,491,665 - 121,533,548 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,492,170 - 121,532,623 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012118,117,486 - 118,160,341 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RNF10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,426,220 - 16,461,478 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,426,234 - 16,547,119 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,429,396 - 16,465,372 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,693,386 - 16,728,782 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,693,372 - 16,728,782 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,653,398 - 16,689,445 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,729,688 - 16,765,114 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,771,763 - 16,807,186 (+)NCBIUU_Cfam_GSD_1.0
Rnf10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,891,072 - 145,928,330 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668389,343 - 427,258 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936668389,961 - 427,213 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,481,249 - 40,519,886 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,481,239 - 40,521,998 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,969,793 - 42,989,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,888,359 - 115,930,790 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,893,457 - 115,930,848 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,166,194 - 129,210,481 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474713,094,084 - 13,134,360 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf10
129 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:40
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000064910
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat

Markers in Region
RH129378  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21241,375,240 - 41,375,437 (+)MAPPERmRatBN7.2
Rnor_6.01247,136,832 - 47,137,028NCBIRnor6.0
Rnor_5.01248,930,521 - 48,930,717UniSTSRnor5.0
RGSC_v3.41242,643,398 - 42,643,594UniSTSRGSC3.4
Celera1242,994,889 - 42,995,085UniSTS
RH 3.4 Map12777.02UniSTS
Cytogenetic Map12q16UniSTS
RH144528  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21241,348,285 - 41,348,429 (+)MAPPERmRatBN7.2
Rnor_6.01247,109,879 - 47,110,022NCBIRnor6.0
Rnor_5.01248,903,568 - 48,903,711UniSTSRnor5.0
RGSC_v3.41242,616,445 - 42,616,588UniSTSRGSC3.4
Celera1242,967,946 - 42,968,089UniSTS
RH 3.4 Map12777.93UniSTS
Cytogenetic Map12q16UniSTS
BF397929  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21241,344,867 - 41,345,006 (+)MAPPERmRatBN7.2
Rnor_6.01247,106,462 - 47,106,600NCBIRnor6.0
Rnor_5.01248,900,151 - 48,900,289UniSTSRnor5.0
RGSC_v3.41242,613,028 - 42,613,166UniSTSRGSC3.4
Celera1242,964,529 - 42,964,667UniSTS
RH 3.4 Map12774.12UniSTS
Cytogenetic Map12q16UniSTS
BF405038  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21241,364,144 - 41,364,263 (+)MAPPERmRatBN7.2
Rnor_6.01247,125,736 - 47,125,854NCBIRnor6.0
Rnor_5.01248,919,425 - 48,919,543UniSTSRnor5.0
RGSC_v3.41242,632,302 - 42,632,420UniSTSRGSC3.4
Celera1242,983,803 - 42,983,921UniSTS
Cytogenetic Map12q16UniSTS
RH135502  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21241,375,378 - 41,375,471 (+)MAPPERmRatBN7.2
Rnor_6.01247,136,970 - 47,137,062NCBIRnor6.0
Rnor_5.01248,930,659 - 48,930,751UniSTSRnor5.0
RGSC_v3.41242,643,536 - 42,643,628UniSTSRGSC3.4
Celera1242,995,027 - 42,995,119UniSTS
Cytogenetic Map12q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064910   ⟹   ENSRNOP00000063855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1241,341,717 - 41,375,504 (+)Ensembl
Rnor_6.0 Ensembl1247,103,314 - 47,138,128 (+)Ensembl
RefSeq Acc Id: NM_001011904   ⟹   NP_001011904
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21241,341,717 - 41,375,505 (+)NCBI
Rnor_6.01247,103,313 - 47,137,096 (+)NCBI
Rnor_5.01248,896,967 - 48,930,787 (+)NCBI
RGSC_v3.41242,609,879 - 42,643,662 (+)RGD
Celera1242,961,374 - 42,995,153 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249434   ⟹   XP_006249496
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21241,342,111 - 41,375,505 (+)NCBI
Rnor_6.01247,103,745 - 47,137,093 (+)NCBI
Rnor_5.01248,896,967 - 48,930,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089268   ⟹   XP_038945196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21241,342,111 - 41,375,505 (+)NCBI
RefSeq Acc Id: XM_039089269   ⟹   XP_038945197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21241,342,111 - 41,375,505 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001011904   ⟸   NM_001011904
- UniProtKB: Q5XI59 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006249496   ⟸   XM_006249434
- Peptide Label: isoform X3
- UniProtKB: A0A0H2UI24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000063855   ⟸   ENSRNOT00000064910
RefSeq Acc Id: XP_038945196   ⟸   XM_039089268
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038945197   ⟸   XM_039089269
- Peptide Label: isoform X2
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI59-F1-model_v2 AlphaFold Q5XI59 1-802 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698697
Promoter ID:EPDNEW_R9222
Type:multiple initiation site
Name:Rnf10_1
Description:ring finger protein 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01247,103,304 - 47,103,364EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309282 AgrOrtholog
BioCyc Gene G2FUF-18979 BioCyc
Ensembl Genes ENSRNOG00000001172 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000063855 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064910 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112480 IMAGE-MGC_LOAD
InterPro Mag2/Rnf10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:288710 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94926 IMAGE-MGC_LOAD
NCBI Gene 288710 ENTREZGENE
PANTHER PTHR12983 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf10 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UI24 ENTREZGENE, UniProtKB/TrEMBL
  Q5XI59 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rnf10  ring finger protein 10  Rnf10_predicted  ring finger protein 10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rnf10_predicted  ring finger protein 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED