Mok (MOK protein kinase) - Rat Genome Database

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Gene: Mok (MOK protein kinase) Rattus norvegicus
Analyze
Symbol: Mok
Name: MOK protein kinase
RGD ID: 1309274
Description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to be located in ciliary base. Predicted to be active in cytoplasm and nucleus. Orthologous to human MOK (MOK protein kinase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC362787; MAPK/MAK/MRK overlapping kinase; MGC94988; Rage; renal tumor antigen
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26129,823,794 - 129,854,669 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl6129,823,795 - 129,854,700 (-)Ensembl
Rnor_6.06135,228,755 - 135,259,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,228,803 - 135,259,603 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,154,332 - 145,185,193 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,531,656 - 135,562,497 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16135,537,843 - 135,568,684 (-)NCBI
Celera6127,391,791 - 127,422,504 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cellular_component  (ND)
ciliary base  (ISO)
cilium  (ISO)
cytoplasm  (IBA)
nucleus  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:15327990   PMID:16899960   PMID:18058943   PMID:25243405  


Genomics

Comparative Map Data
Mok
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26129,823,794 - 129,854,669 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl6129,823,795 - 129,854,700 (-)Ensembl
Rnor_6.06135,228,755 - 135,259,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,228,803 - 135,259,603 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,154,332 - 145,185,193 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,531,656 - 135,562,497 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16135,537,843 - 135,568,684 (-)NCBI
Celera6127,391,791 - 127,422,504 (-)NCBICelera
Cytogenetic Map6q32NCBI
MOK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14102,224,500 - 102,305,190 (-)EnsemblGRCh38hg38GRCh38
GRCh3814102,224,441 - 102,305,191 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714102,690,778 - 102,771,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614101,764,931 - 101,841,284 (-)NCBINCBI36hg18NCBI36
Build 3414101,764,930 - 101,841,284NCBI
Celera1482,749,683 - 82,826,044 (-)NCBI
Cytogenetic Map14q32.31NCBI
HuRef1482,869,680 - 82,948,660 (-)NCBIHuRef
CHM1_114102,628,661 - 102,709,365 (-)NCBICHM1_1
Mok
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912110,774,232 - 110,807,391 (-)NCBIGRCm39mm39
GRCm39 Ensembl12110,774,232 - 110,807,373 (-)Ensembl
GRCm3812110,807,798 - 110,840,962 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12110,807,798 - 110,840,939 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712112,046,008 - 112,079,149 (-)NCBIGRCm37mm9NCBIm37
MGSCv3612111,255,605 - 111,288,746 (-)NCBImm8
Celera12112,001,029 - 112,034,179 (-)NCBICelera
Cytogenetic Map12F1NCBI
Mok
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555381,588,990 - 1,621,852 (-)NCBIChiLan1.0ChiLan1.0
MOK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.114102,665,543 - 102,741,546 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14102,665,543 - 102,741,546 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01482,842,769 - 82,925,263 (-)NCBIMhudiblu_PPA_v0panPan3
MOK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,209,211 - 70,270,065 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,211,746 - 70,269,884 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha869,722,999 - 69,784,172 (-)NCBI
ROS_Cfam_1.0870,486,598 - 70,547,831 (-)NCBI
ROS_Cfam_1.0 Ensembl870,487,395 - 70,547,798 (-)Ensembl
UMICH_Zoey_3.1870,154,016 - 70,212,532 (-)NCBI
UNSW_CanFamBas_1.0870,219,021 - 70,277,520 (-)NCBI
UU_Cfam_GSD_1.0870,619,733 - 70,678,221 (-)NCBI
Mok
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,716,282 - 3,764,264 (+)NCBI
SpeTri2.0NW_004936835432,403 - 479,605 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MOK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27129,529,153 - 129,596,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MOK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,157,374 - 80,233,339 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2480,157,847 - 80,213,292 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605367,353,339 - 67,431,375 (-)NCBIVero_WHO_p1.0
Mok
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247342,130,590 - 2,145,525 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D6Rat181  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26129,836,303 - 129,836,423 (+)MAPPERmRatBN7.2
Rnor_6.06135,241,265 - 135,241,384NCBIRnor6.0
Rnor_5.06145,172,564 - 145,172,683UniSTSRnor5.0
RGSC_v3.46135,544,165 - 135,544,285RGDRGSC3.4
RGSC_v3.46135,544,166 - 135,544,285UniSTSRGSC3.4
RGSC_v3.16135,550,353 - 135,550,472RGD
Celera6127,404,306 - 127,404,429UniSTS
RH 3.4 Map6784.7UniSTS
RH 3.4 Map6784.7RGD
RH 2.0 Map61125.0RGD
SHRSP x BN Map681.7498RGD
Cytogenetic Map6q32UniSTS
D6Got191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26129,836,287 - 129,836,453 (+)MAPPERmRatBN7.2
Rnor_6.06135,241,249 - 135,241,414NCBIRnor6.0
Rnor_5.06145,172,534 - 145,172,699UniSTSRnor5.0
RGSC_v3.46135,544,149 - 135,544,315RGDRGSC3.4
RGSC_v3.46135,544,150 - 135,544,315UniSTSRGSC3.4
RGSC_v3.16135,550,337 - 135,550,502RGD
Celera6127,404,290 - 127,404,459UniSTS
RH 3.4 Map6785.2RGD
RH 3.4 Map6785.2UniSTS
RH 2.0 Map61114.2RGD
Cytogenetic Map6q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:89
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000010529
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 23 8 1
Low 3 43 53 37 19 37 8 11 51 35 33 10 8
Below cutoff 4 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001010965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_172487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000010529   ⟹   ENSRNOP00000010529
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,823,795 - 129,854,624 (-)Ensembl
Rnor_6.0 Ensembl6135,228,803 - 135,259,603 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088986   ⟹   ENSRNOP00000069896
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,823,808 - 129,854,657 (-)Ensembl
Rnor_6.0 Ensembl6135,231,606 - 135,251,073 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110675   ⟹   ENSRNOP00000084926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,823,795 - 129,854,700 (-)Ensembl
RefSeq Acc Id: NM_001010965   ⟹   NP_001010965
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,624 (-)NCBI
Rnor_6.06135,228,755 - 135,259,586 (-)NCBI
Rnor_5.06145,154,332 - 145,185,193 (+)NCBI
RGSC_v3.46135,531,656 - 135,562,497 (-)RGD
Celera6127,391,791 - 127,422,504 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240589   ⟹   XP_006240651
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,669 (-)NCBI
Rnor_6.06135,228,755 - 135,259,638 (-)NCBI
Rnor_5.06145,154,332 - 145,185,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764944   ⟹   XP_008763166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,669 (-)NCBI
Rnor_6.06135,228,755 - 135,259,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112554   ⟹   XP_038968482
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,203 (-)NCBI
RefSeq Acc Id: XM_039112556   ⟹   XP_038968484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,208 (-)NCBI
RefSeq Acc Id: XM_039112557   ⟹   XP_038968485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,211 (-)NCBI
RefSeq Acc Id: XM_039112558   ⟹   XP_038968486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,212 (-)NCBI
RefSeq Acc Id: XM_039112559   ⟹   XP_038968487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,211 (-)NCBI
RefSeq Acc Id: XM_039112560   ⟹   XP_038968488
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,206 (-)NCBI
RefSeq Acc Id: XM_039112561   ⟹   XP_038968489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,211 (-)NCBI
RefSeq Acc Id: XM_039112562   ⟹   XP_038968490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,211 (-)NCBI
RefSeq Acc Id: XM_039112563   ⟹   XP_038968491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,846,071 (-)NCBI
RefSeq Acc Id: XM_039112565   ⟹   XP_038968493
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,669 (-)NCBI
RefSeq Acc Id: XM_039112566   ⟹   XP_038968494
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,668 (-)NCBI
RefSeq Acc Id: XM_039112567   ⟹   XP_038968495
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,839,252 (-)NCBI
RefSeq Acc Id: XM_039112568   ⟹   XP_038968496
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,846,071 (-)NCBI
RefSeq Acc Id: XM_039112569   ⟹   XP_038968497
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,824,256 - 129,847,219 (-)NCBI
RefSeq Acc Id: XM_039112570   ⟹   XP_038968498
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,824,266 - 129,847,220 (-)NCBI
RefSeq Acc Id: XM_039112571   ⟹   XP_038968499
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,824,259 - 129,847,217 (-)NCBI
RefSeq Acc Id: XM_039112572   ⟹   XP_038968500
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,660 (-)NCBI
RefSeq Acc Id: XM_039112573   ⟹   XP_038968501
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,839,252 (-)NCBI
RefSeq Acc Id: XM_039112574   ⟹   XP_038968502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,535 (-)NCBI
RefSeq Acc Id: XM_039112575   ⟹   XP_038968503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,840,829 (-)NCBI
RefSeq Acc Id: XM_039112576   ⟹   XP_038968504
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,839,224 (-)NCBI
RefSeq Acc Id: XM_039112577   ⟹   XP_038968505
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,839,252 (-)NCBI
RefSeq Acc Id: XM_039112578   ⟹   XP_038968506
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,667 (-)NCBI
RefSeq Acc Id: XM_039112579   ⟹   XP_038968507
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,828,949 (-)NCBI
RefSeq Acc Id: XM_039112580   ⟹   XP_038968508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,828,812 - 129,847,239 (-)NCBI
RefSeq Acc Id: XM_039112581   ⟹   XP_038968509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,660 (-)NCBI
RefSeq Acc Id: XM_039112582   ⟹   XP_038968510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,854,660 (-)NCBI
RefSeq Acc Id: XR_005505546
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,825,849 - 129,847,211 (-)NCBI
RefSeq Acc Id: XR_005505547
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,824,267 - 129,847,213 (-)NCBI
RefSeq Acc Id: XR_005505548
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,824,263 - 129,847,213 (-)NCBI
RefSeq Acc Id: XR_005505549
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,214 (-)NCBI
RefSeq Acc Id: XR_005505550
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26129,823,794 - 129,847,214 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001010965 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240651 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763166 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968482 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968484 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968485 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968486 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968487 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968488 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968489 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968490 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968491 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968493 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968494 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968495 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968496 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968497 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968498 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968499 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968500 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968502 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968503 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968504 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968505 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968506 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968507 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968508 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968509 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968510 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79440 (Get FASTA)   NCBI Sequence Viewer  
  EDL97496 (Get FASTA)   NCBI Sequence Viewer  
  EDL97497 (Get FASTA)   NCBI Sequence Viewer  
  EDL97498 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001010965   ⟸   NM_001010965
- Sequence:
RefSeq Acc Id: XP_006240651   ⟸   XM_006240589
- Peptide Label: isoform X4
- UniProtKB: F7F4B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763166   ⟸   XM_008764944
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: ENSRNOP00000010529   ⟸   ENSRNOT00000010529
RefSeq Acc Id: ENSRNOP00000069896   ⟸   ENSRNOT00000088986
RefSeq Acc Id: XP_038968493   ⟸   XM_039112565
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038968494   ⟸   XM_039112566
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038968506   ⟸   XM_039112578
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968510   ⟸   XM_039112582
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968509   ⟸   XM_039112581
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968500   ⟸   XM_039112572
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038968502   ⟸   XM_039112574
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968486   ⟸   XM_039112558
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038968490   ⟸   XM_039112562
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038968487   ⟸   XM_039112559
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038968489   ⟸   XM_039112561
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038968485   ⟸   XM_039112557
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968484   ⟸   XM_039112556
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968488   ⟸   XM_039112560
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038968482   ⟸   XM_039112554
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968496   ⟸   XM_039112568
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038968491   ⟸   XM_039112563
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038968503   ⟸   XM_039112575
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968505   ⟸   XM_039112577
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968501   ⟸   XM_039112573
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968495   ⟸   XM_039112567
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038968504   ⟸   XM_039112576
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968507   ⟸   XM_039112579
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038968497   ⟸   XM_039112569
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038968499   ⟸   XM_039112571
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038968498   ⟸   XM_039112570
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038968508   ⟸   XM_039112580
- Peptide Label: isoform X20
RefSeq Acc Id: ENSRNOP00000084926   ⟸   ENSRNOT00000110675
Protein Domains
Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694832
Promoter ID:EPDNEW_R5356
Type:multiple initiation site
Name:Mok_1
Description:MOK protein kinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06135,259,614 - 135,259,674EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309274 AgrOrtholog
Ensembl Genes ENSRNOG00000007850 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000010529 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000069896 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010529 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000088986 ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7115407 IMAGE-MGC_LOAD
InterPro Kinase-like_dom UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_prot_kinase_AS UniProtKB/TrEMBL
KEGG Report rno:362787 UniProtKB/TrEMBL
MGC_CLONE MGC:94988 IMAGE-MGC_LOAD
NCBI Gene 362787 ENTREZGENE
Pfam Pkinase UniProtKB/TrEMBL
PhenoGen Mok PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
UniProt A0A0G2JWI7_RAT UniProtKB/TrEMBL
  F7F4B1 ENTREZGENE, UniProtKB/TrEMBL
  Q6AXN5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-29 Mok  MOK protein kinase  Rage  renal tumor antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rage  renal tumor antigen  Rage_predicted  renal tumor antigen (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rage_predicted  renal tumor antigen (predicted)      Symbol and Name status set to approved 70820 APPROVED