Agap1 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 1) - Rat Genome Database

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Gene: Agap1 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 1) Rattus norvegicus
Analyze
Symbol: Agap1
Name: ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
RGD ID: 1309244
Description: Predicted to enable GTPase activator activity; GTPase activity; and phospholipid binding activity. Predicted to be involved in activation of GTPase activity. Orthologous to several human genes including AGAP1 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 1); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1; centaurin, gamma 2; Centg2; LOC316611
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2990,039,760 - 90,475,196 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl990,039,605 - 90,470,958 (+)Ensembl
Rnor_6.0996,718,901 - 97,034,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl996,621,586 - 97,030,163 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0996,414,188 - 96,724,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4988,711,408 - 88,994,380 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1988,861,495 - 89,198,155 (+)NCBI
Celera987,739,807 - 88,021,762 (+)NCBICelera
Cytogenetic Map9q35-q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15381706   PMID:18954304   PMID:20664521   PMID:25931508  


Genomics

Comparative Map Data
Agap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2990,039,760 - 90,475,196 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl990,039,605 - 90,470,958 (+)Ensembl
Rnor_6.0996,718,901 - 97,034,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl996,621,586 - 97,030,163 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0996,414,188 - 96,724,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4988,711,408 - 88,994,380 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1988,861,495 - 89,198,155 (+)NCBI
Celera987,739,807 - 88,021,762 (+)NCBICelera
Cytogenetic Map9q35-q36NCBI
AGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,494,043 - 236,131,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2235,494,043 - 236,131,793 (+)EnsemblGRCh38hg38GRCh38
GRCh372236,402,687 - 237,040,437 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,067,475 - 236,698,866 (+)NCBINCBI36hg18NCBI36
Build 342236,184,769 - 236,815,863NCBI
Celera2230,115,921 - 230,747,258 (+)NCBI
Cytogenetic Map2q37.2NCBI
HuRef2228,413,571 - 228,835,033 (+)NCBIHuRef
CHM1_12236,408,551 - 237,046,244 (+)NCBICHM1_1
T2T-CHM13v2.02235,983,538 - 236,621,510 (+)NCBI
Agap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39189,382,533 - 89,823,004 (+)NCBIGRCm39mm39
GRCm39 Ensembl189,382,528 - 89,825,339 (+)Ensembl
GRCm38189,454,811 - 89,895,282 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl189,454,806 - 89,897,617 (+)EnsemblGRCm38mm10GRCm38
MGSCv37191,351,386 - 91,791,857 (+)NCBIGRCm37mm9NCBIm37
MGSCv36191,285,982 - 91,726,453 (+)NCBImm8
Celera192,388,739 - 92,836,477 (+)NCBICelera
Cytogenetic Map1DNCBI
AGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B241,802,578 - 242,223,839 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B241,802,544 - 242,216,166 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B122,722,529 - 123,363,009 (+)NCBIMhudiblu_PPA_v0panPan3
AGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12546,449,668 - 46,980,358 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2546,449,705 - 46,973,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2546,949,451 - 47,480,836 (+)NCBI
ROS_Cfam_1.02546,800,549 - 47,332,157 (+)NCBI
ROS_Cfam_1.0 Ensembl2546,800,415 - 47,326,012 (+)Ensembl
UMICH_Zoey_3.12546,707,383 - 47,240,212 (+)NCBI
UNSW_CanFamBas_1.02546,502,287 - 47,033,741 (+)NCBI
UU_Cfam_GSD_1.02546,731,544 - 47,263,667 (+)NCBI
Agap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303188,689,998 - 189,037,540 (+)NCBI
SpeTri2.0NW_0049365251,898,006 - 2,249,698 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15135,441,906 - 135,993,311 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115135,442,440 - 135,999,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215149,877,134 - 150,433,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110121,508,992 - 122,144,519 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl10121,719,490 - 122,142,090 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604077,254,495 - 77,917,718 (-)NCBIVero_WHO_p1.0
Agap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248471,370,693 - 1,846,449 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248471,370,699 - 1,863,698 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
DXRat70  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4988,953,520 - 88,953,765RGDRGSC3.4
RGSC_v3.4988,953,521 - 88,953,765UniSTSRGSC3.4
RGSC_v3.1989,158,289 - 89,158,534RGD
Celera987,980,690 - 87,980,934UniSTS
Cytogenetic Map9q35UniSTS
D9Got113  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4988,954,119 - 88,954,275RGDRGSC3.4
RGSC_v3.4988,954,120 - 88,954,275UniSTSRGSC3.4
RGSC_v3.1989,158,888 - 89,159,044RGD
Celera987,981,289 - 87,981,444UniSTS
RH 2.0 Map9933.3RGD
Cytogenetic Map9q35UniSTS
RH143503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2990,417,404 - 90,417,529 (+)MAPPERmRatBN7.2
Rnor_6.0996,974,851 - 96,974,975NCBIRnor6.0
Rnor_5.0996,667,282 - 96,667,406UniSTSRnor5.0
RGSC_v3.4988,940,840 - 88,940,964UniSTSRGSC3.4
Celera987,968,028 - 87,968,152UniSTS
Cytogenetic Map9q35UniSTS
BF387139  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2990,208,769 - 90,208,947 (+)MAPPERmRatBN7.2
Rnor_6.0996,767,188 - 96,767,365NCBIRnor6.0
Rnor_5.0996,459,645 - 96,459,822UniSTSRnor5.0
RGSC_v3.4988,732,154 - 88,732,331UniSTSRGSC3.4
Celera987,760,552 - 87,760,729UniSTS
Cytogenetic Map9q35UniSTS
BE102881  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2990,301,943 - 90,302,108 (+)MAPPERmRatBN7.2
Rnor_6.0996,860,228 - 96,860,392NCBIRnor6.0
Rnor_5.0996,552,685 - 96,552,849UniSTSRnor5.0
RGSC_v3.4988,825,449 - 88,825,613UniSTSRGSC3.4
Celera987,853,784 - 87,853,948UniSTS
Cytogenetic Map9q35UniSTS
RH139308  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2990,301,014 - 90,301,213 (+)MAPPERmRatBN7.2
Rnor_6.0996,859,300 - 96,859,497NCBIRnor6.0
Rnor_5.0996,551,757 - 96,551,954UniSTSRnor5.0
RGSC_v3.4988,824,520 - 88,824,718UniSTSRGSC3.4
Celera987,852,855 - 87,853,053UniSTS
Cytogenetic Map9q35UniSTS
RH140788  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2990,395,802 - 90,396,008 (+)MAPPERmRatBN7.2
Rnor_6.0996,953,242 - 96,953,447NCBIRnor6.0
Rnor_5.0996,645,673 - 96,645,878UniSTSRnor5.0
RGSC_v3.4988,919,238 - 88,919,443UniSTSRGSC3.4
Celera987,946,457 - 87,946,662UniSTS
Cytogenetic Map9q35UniSTS
UniSTS:234171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2990,469,482 - 90,469,691 (+)MAPPERmRatBN7.2
Rnor_6.0997,028,688 - 97,028,896NCBIRnor6.0
Rnor_5.0996,718,443 - 96,718,651UniSTSRnor5.0
RGSC_v3.4988,992,905 - 88,993,113UniSTSRGSC3.4
Celera988,020,287 - 88,020,495UniSTS
Cytogenetic Map9q35UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:124
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000065720
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 37 14 4 14 4 1 2 74 35 41 11 1
Low 1 6 43 37 5 37 7 9 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC158781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000065720   ⟹   ENSRNOP00000060109
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl990,188,025 - 90,470,958 (+)Ensembl
Rnor_6.0 Ensembl996,746,440 - 97,030,163 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088192   ⟹   ENSRNOP00000074469
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl990,039,605 - 90,470,958 (+)Ensembl
Rnor_6.0 Ensembl996,621,586 - 97,028,280 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104807   ⟹   ENSRNOP00000086357
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl990,163,093 - 90,470,958 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105657   ⟹   ENSRNOP00000093401
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl990,163,093 - 90,470,958 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107897   ⟹   ENSRNOP00000085146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl990,163,093 - 90,470,958 (+)Ensembl
RefSeq Acc Id: NM_001108230   ⟹   NP_001101700
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,188,025 - 90,470,958 (+)NCBI
Rnor_6.0996,746,440 - 97,030,163 (+)NCBI
Rnor_5.0996,414,188 - 96,724,155 (+)NCBI
RGSC_v3.4988,711,408 - 88,994,380 (+)RGD
Celera987,739,807 - 88,021,762 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245402   ⟹   XP_006245464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,574 - 90,475,196 (+)NCBI
Rnor_6.0996,718,902 - 97,034,400 (+)NCBI
Rnor_5.0996,414,188 - 96,724,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596490   ⟹   XP_017451979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,574 - 90,475,196 (+)NCBI
Rnor_6.0996,718,901 - 97,034,400 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596493   ⟹   XP_017451982
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,571 - 90,475,196 (+)NCBI
Rnor_6.0996,718,901 - 97,034,400 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083737   ⟹   XP_038939665
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,570 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083738   ⟹   XP_038939666
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,571 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083739   ⟹   XP_038939667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,571 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083740   ⟹   XP_038939668
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,573 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083741   ⟹   XP_038939669
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,160,948 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083742   ⟹   XP_038939670
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,286 - 90,456,090 (+)NCBI
RefSeq Acc Id: XM_039083744   ⟹   XP_038939672
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,160,947 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083745   ⟹   XP_038939673
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,288 - 90,465,055 (+)NCBI
RefSeq Acc Id: XM_039083746   ⟹   XP_038939674
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,160,933 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083747   ⟹   XP_038939675
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,159,281 - 90,381,289 (+)NCBI
RefSeq Acc Id: XM_039083748   ⟹   XP_038939676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,039,760 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083749   ⟹   XP_038939677
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,039,760 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083750   ⟹   XP_038939678
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,039,760 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083751   ⟹   XP_038939679
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,039,760 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083752   ⟹   XP_038939680
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,039,760 - 90,475,196 (+)NCBI
RefSeq Acc Id: XM_039083753   ⟹   XP_038939681
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2990,236,925 - 90,475,196 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101700   ⟸   NM_001108230
- Sequence:
RefSeq Acc Id: XP_006245464   ⟸   XM_006245402
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017451979   ⟸   XM_017596490
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017451982   ⟸   XM_017596493
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000060109   ⟸   ENSRNOT00000065720
RefSeq Acc Id: ENSRNOP00000074469   ⟸   ENSRNOT00000088192
RefSeq Acc Id: XP_038939676   ⟸   XM_039083748
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038939677   ⟸   XM_039083749
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038939678   ⟸   XM_039083750
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038939679   ⟸   XM_039083751
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038939680   ⟸   XM_039083752
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038939675   ⟸   XM_039083747
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038939670   ⟸   XM_039083742
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038939673   ⟸   XM_039083745
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038939665   ⟸   XM_039083737
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939667   ⟸   XM_039083739
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038939666   ⟸   XM_039083738
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939668   ⟸   XM_039083740
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038939674   ⟸   XM_039083746
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038939672   ⟸   XM_039083744
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038939669   ⟸   XM_039083741
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038939681   ⟸   XM_039083753
- Peptide Label: isoform X19
RefSeq Acc Id: ENSRNOP00000093401   ⟸   ENSRNOT00000105657
RefSeq Acc Id: ENSRNOP00000086357   ⟸   ENSRNOT00000104807
RefSeq Acc Id: ENSRNOP00000085146   ⟸   ENSRNOT00000107897
Protein Domains
Arf-GAP   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K847-F1-model_v2 AlphaFold A0A0G2K847 1-889 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
9 96721475 96721476 C A snv CDR, ACI/EurMcwi (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), ACI/EurMcwi (RGD), LN/MavRrrc (RGD), SS/JrHsdMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), SS/JrHsdMcwi (2019), SBN/Ygl (RGD)
9 96721796 96721797 T C snv CDR, CDS, ACI/EurMcwi (MCW), ACI/EurMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020), SS/JrHsdMcwi (2019), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), LL/MavRrrc (RGD), SBN/Ygl (RGD), SS/JrHsdMcwi (RGD), BXH2/CubMcwi (2020), HXB10/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), MR/N (2020), SHR/OlalpcvMcwi (2019)
9 96722242 96722243 C T snv CDR, CDS, ACI/EurMcwi (MCW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), LN/MavRrrc (RGD), MHS/Gib (RGD), SBN/Ygl (RGD), SS/JrHsdMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), MR/N (2020), SS/JrHsdMcwi (2019), LE/Stm (RGD), FHL/EurMcwi (RGD)
9 96979055 96979056 G A snv CDS


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
9 96662935 96662936 A G snv Crl:SD (UDEL)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
9 88944945 88944946 G C snv SS/JrHsdMcwi (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309244 AgrOrtholog
BioCyc Gene G2FUF-26772 BioCyc
Ensembl Genes ENSRNOG00000019476 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060109 ENTREZGENE
  ENSRNOP00000060109.1 UniProtKB/TrEMBL
  ENSRNOP00000074469 ENTREZGENE
  ENSRNOP00000074469.2 UniProtKB/TrEMBL
  ENSRNOP00000085146.1 UniProtKB/TrEMBL
  ENSRNOP00000086357.1 UniProtKB/TrEMBL
  ENSRNOP00000093401 ENTREZGENE
  ENSRNOP00000093401.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065720 ENTREZGENE
  ENSRNOT00000065720.2 UniProtKB/TrEMBL
  ENSRNOT00000088192 ENTREZGENE
  ENSRNOT00000088192.2 UniProtKB/TrEMBL
  ENSRNOT00000104807.1 UniProtKB/TrEMBL
  ENSRNOT00000105657 ENTREZGENE
  ENSRNOT00000105657.1 UniProtKB/TrEMBL
  ENSRNOT00000107897.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.150 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135166 IMAGE-MGC_LOAD
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ArfGAP UniProtKB/TrEMBL
  ARFGAP/RecO UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report rno:316611 UniProtKB/TrEMBL
MGC_CLONE MGC:188116 IMAGE-MGC_LOAD
NCBI Gene 316611 ENTREZGENE
Pfam Ank_2 UniProtKB/TrEMBL
  ArfGap UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  Ras UniProtKB/TrEMBL
PhenoGen Agap1 PhenoGen
PRINTS REVINTRACTNG UniProtKB/TrEMBL
PROSITE ANK_REPEAT UniProtKB/TrEMBL
  ARFGAP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  ArfGap UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF57863 UniProtKB/TrEMBL
UniProt A0A0G2K847_RAT UniProtKB/TrEMBL
  A0A8I6A118_RAT UniProtKB/TrEMBL
  A0A8I6AWZ3_RAT UniProtKB/TrEMBL
  A0A8I6GDZ1_RAT UniProtKB/TrEMBL
  G3V9U1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Agap1  ArfGAP with GTPase domain, ankyrin repeat and PH domain 1  Centg2  centaurin, gamma 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Centg2  centaurin, gamma 2   Centg2_predicted  centaurin, gamma 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Centg2_predicted  centaurin, gamma 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED