Gene: Col6a6 (collagen type VI alpha 6 chain) Rattus norvegicus
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Symbol: Col6a6
Name: collagen type VI alpha 6 chain
Description: PARTICIPATES IN cell-extracellular matrix signaling pathway; FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); INTERACTS WITH bisphenol A; diuron; endosulfan
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-6(VI) chain; collagen, type VI, alpha 6; LOC315979; RGD1309172; similar to matrilin 3b; similar to RIKEN cDNA E330026B02
Orthologs:
Homo sapiens (human) : COL6A6 (collagen type VI alpha 6 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col6a6 (collagen, type VI, alpha 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col6a6 (collagen type VI alpha 6 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL6A6 (collagen type VI alpha 6 chain)
Canis lupus familiaris (dog) : COL6A6 (collagen type VI alpha 6 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col6a6 (collagen type VI alpha 6 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08114,352,130 - 114,449,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08113,727,475 - 113,872,124 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,793,849 - 110,892,578 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18110,810,892 - 110,935,930 (-)NCBI
Celera8105,644,636 - 105,799,150 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col6a6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309172
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2018-08-14
Status: ACTIVE