Ccnl2 (cyclin L2) - Rat Genome Database

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Gene: Ccnl2 (cyclin L2) Rattus norvegicus
Analyze
Symbol: Ccnl2
Name: cyclin L2
RGD ID: 1309149
Description: Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of RNA splicing and regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in nucleus. Orthologous to human CCNL2 (cyclin L2); INTERACTS WITH 17beta-estradiol; 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cyclin-L2; LOC298686
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,698,951 - 171,711,037 (+)NCBIGRCr8
mRatBN7.25166,416,940 - 166,428,997 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,417,508 - 166,436,882 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,122,392 - 169,133,662 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,943,811 - 170,955,083 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,906,342 - 170,917,614 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,256,301 - 173,268,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,256,637 - 173,276,169 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,731,925 - 176,743,703 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,666,512 - 172,673,024 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,677,006 - 172,683,515 (+)NCBI
Celera5164,618,287 - 164,624,788 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
enniatin  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
miconazole  (ISO)
nefazodone  (EXP)
nicotine  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
rotenone  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
testosterone  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
tolcapone  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification and characterization of the CDK12/cyclin L1 complex involved in alternative splicing regulation. Chen HH, etal., Mol Cell Biol. 2006 Apr;26(7):2736-45.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15057822   PMID:15489334   PMID:17494991  


Genomics

Comparative Map Data
Ccnl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,698,951 - 171,711,037 (+)NCBIGRCr8
mRatBN7.25166,416,940 - 166,428,997 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,417,508 - 166,436,882 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,122,392 - 169,133,662 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,943,811 - 170,955,083 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,906,342 - 170,917,614 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,256,301 - 173,268,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,256,637 - 173,276,169 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,731,925 - 176,743,703 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,666,512 - 172,673,024 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,677,006 - 172,683,515 (+)NCBI
Celera5164,618,287 - 164,624,788 (+)NCBICelera
Cytogenetic Map5q36NCBI
CCNL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,385,711 - 1,399,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,385,711 - 1,399,335 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,321,091 - 1,334,715 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,310,954 - 1,324,553 (-)NCBINCBI36Build 36hg18NCBI36
Celera11,246,539 - 1,260,165 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1593,397 - 606,925 (-)NCBIHuRef
CHM1_111,308,113 - 1,322,132 (-)NCBICHM1_1
T2T-CHM13v2.01817,645 - 832,544 (-)NCBIT2T-CHM13v2.0
Ccnl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,894,468 - 155,909,005 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,896,946 - 155,909,000 (+)EnsemblGRCm39 Ensembl
GRCm384155,810,219 - 155,824,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,812,489 - 155,824,543 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,186,598 - 155,198,652 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,656,289 - 154,668,343 (+)NCBIMGSCv36mm8
Celera4158,083,766 - 158,095,796 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.47NCBI
Ccnl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,423,491 - 9,432,811 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,423,491 - 9,432,811 (+)NCBIChiLan1.0ChiLan1.0
CCNL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,826,053 - 226,839,037 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,523,620 - 225,536,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,530 - 155,377 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,343,608 - 1,355,392 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,344,346 - 1,355,361 (-)Ensemblpanpan1.1panPan2
CCNL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,542,358 - 56,550,701 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,542,566 - 56,550,691 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,618,538 - 56,626,881 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,744,445 - 56,752,791 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,744,452 - 56,752,793 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,735,164 - 56,743,507 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,627,430 - 56,635,773 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,017,713 - 57,026,057 (-)NCBIUU_Cfam_GSD_1.0
Ccnl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,692,794 - 27,700,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,764,189 - 1,772,475 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,765,027 - 1,773,156 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,659,054 - 63,668,047 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,659,053 - 63,668,077 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,269,483 - 58,271,859 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103225798
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,049,590 - 130,065,241 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,049,646 - 130,065,881 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,588,417 - 34,603,111 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,233,574 - 8,242,542 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,233,547 - 8,242,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccnl2
49 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:71
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000025531
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat

Markers in Region
RH144311  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,422,663 - 166,422,796 (+)MAPPERmRatBN7.2
Rnor_6.05173,261,946 - 173,262,078NCBIRnor6.0
Rnor_5.05176,737,560 - 176,737,692UniSTSRnor5.0
RGSC_v3.45172,671,627 - 172,671,759UniSTSRGSC3.4
Celera5164,623,391 - 164,623,523UniSTS
RH 3.4 Map51164.4UniSTS
Cytogenetic Map5q36UniSTS
AA955673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,420,765 - 166,420,900 (+)MAPPERmRatBN7.2
Rnor_6.05173,260,048 - 173,260,182NCBIRnor6.0
Rnor_5.05176,735,662 - 176,735,796UniSTSRnor5.0
RGSC_v3.45172,669,727 - 172,669,861UniSTSRGSC3.4
Celera5164,621,493 - 164,621,627UniSTS
RH 3.4 Map51175.1UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_592798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025531   ⟹   ENSRNOP00000025531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,417,508 - 166,435,860 (+)Ensembl
Rnor_6.0 Ensembl5173,256,637 - 173,275,340 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000025952   ⟹   ENSRNOP00000025952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,435,194 - 166,436,882 (+)Ensembl
Rnor_6.0 Ensembl5173,274,774 - 173,276,169 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089936   ⟹   ENSRNOP00000068952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,417,540 - 166,428,800 (+)Ensembl
Rnor_6.0 Ensembl5173,256,834 - 173,263,334 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096422   ⟹   ENSRNOP00000077305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,417,550 - 166,428,797 (+)Ensembl
RefSeq Acc Id: NM_001401305   ⟹   NP_001388234
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,699,775 - 171,711,037 (+)NCBI
mRatBN7.25166,417,540 - 166,428,802 (+)NCBI
RefSeq Acc Id: NM_001401307   ⟹   NP_001388236
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,699,775 - 171,707,417 (+)NCBI
mRatBN7.25166,417,540 - 166,425,182 (+)NCBI
RefSeq Acc Id: XM_006239544   ⟹   XP_006239606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,698,951 - 171,711,035 (+)NCBI
mRatBN7.25166,416,954 - 166,428,997 (+)NCBI
Rnor_6.05173,256,306 - 173,268,279 (+)NCBI
Rnor_5.05176,731,925 - 176,743,703 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039109721   ⟹   XP_038965649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,698,951 - 171,711,035 (+)NCBI
mRatBN7.25166,416,952 - 166,428,997 (+)NCBI
RefSeq Acc Id: XM_063287498   ⟹   XP_063143568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,698,951 - 171,711,035 (+)NCBI
RefSeq Acc Id: XM_063287499   ⟹   XP_063143569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,705,820 - 171,711,035 (+)NCBI
RefSeq Acc Id: XM_063287500   ⟹   XP_063143570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,698,951 - 171,708,404 (+)NCBI
RefSeq Acc Id: XR_005504417
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,698,951 - 171,707,633 (+)NCBI
mRatBN7.25166,416,944 - 166,425,479 (+)NCBI
RefSeq Acc Id: XP_006239606   ⟸   XM_006239544
- Peptide Label: isoform X1
- UniProtKB: A6IUS7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068952   ⟸   ENSRNOT00000089936
Ensembl Acc Id: ENSRNOP00000025531   ⟸   ENSRNOT00000025531
Ensembl Acc Id: ENSRNOP00000025952   ⟸   ENSRNOT00000025952
RefSeq Acc Id: XP_038965649   ⟸   XM_039109721
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y5M3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077305   ⟸   ENSRNOT00000096422
RefSeq Acc Id: NP_001388234   ⟸   NM_001401305
- Peptide Label: isoform 1
- UniProtKB: Q5I0H5 (UniProtKB/Swiss-Prot),   A6IUS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388236   ⟸   NM_001401307
- Peptide Label: isoform 2
- UniProtKB: A6IUS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143568   ⟸   XM_063287498
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y5M3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143570   ⟸   XM_063287500
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063143569   ⟸   XM_063287499
- Peptide Label: isoform X4
Protein Domains
Cyclin C-terminal   Cyclin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0H5-F1-model_v2 AlphaFold Q5I0H5 1-520 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309149 AgrOrtholog
BioCyc Gene G2FUF-38896 BioCyc
Ensembl Genes ENSRNOG00000018691 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025531.7 UniProtKB/TrEMBL
  ENSRNOT00000089936.2 UniProtKB/TrEMBL
  ENSRNOT00000096422.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7325177 IMAGE-MGC_LOAD
InterPro Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109544 IMAGE-MGC_LOAD
NCBI Gene 298686 ENTREZGENE
PANTHER CYCLIN-L2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10026 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccnl2 PhenoGen
PIRSF Cyclin_L UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018691 RatGTEx
SMART CYCLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHQ5_RAT UniProtKB/TrEMBL
  A0A8I5Y5M3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QZY3_RAT UniProtKB/TrEMBL
  A6IUS7 ENTREZGENE, UniProtKB/TrEMBL
  A6IUS8 ENTREZGENE, UniProtKB/TrEMBL
  A6IUS9_RAT UniProtKB/TrEMBL
  A6IUT0_RAT UniProtKB/TrEMBL
  CCNL2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ccnl2  cyclin L2  Ccnl2_predicted  cyclin L2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ccnl2_predicted  cyclin L2 (predicted)      Symbol and Name status set to approved 70820 APPROVED