Slc9c1 (solute carrier family 9 member C1) - Rat Genome Database

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Gene: Slc9c1 (solute carrier family 9 member C1) Rattus norvegicus
Analyze
Symbol: Slc9c1
Name: solute carrier family 9 member C1
RGD ID: 1309075
Description: Predicted to enable solute:proton antiporter activity. Predicted to be involved in proton transmembrane transport and sodium ion transport. Predicted to act upstream of or within flagellated sperm motility. Predicted to be located in motile cilium. Orthologous to human SLC9C1 (solute carrier family 9 member C1); INTERACTS WITH trichloroethene; 1,2-dichloroethane (ortholog); 2-hydroxypropanoic acid (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: gene model 610, (NCBI); Gm610; LOC288117; Slc9a10; sodium/hydrogen exchanger 10; solute carrier family 9, member 10; solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1; sperm-specific sodium proton exchanger
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21155,211,774 - 55,278,285 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1155,211,792 - 55,278,285 (-)Ensembl
Rnor_6.01160,184,953 - 60,251,458 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,184,961 - 60,251,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01164,285,570 - 64,350,871 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,702,554 - 56,769,394 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11156,760,142 - 56,826,983 (-)NCBI
Celera1154,735,652 - 54,802,154 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12783626   PMID:14634667  


Genomics

Comparative Map Data
Slc9c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21155,211,774 - 55,278,285 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1155,211,792 - 55,278,285 (-)Ensembl
Rnor_6.01160,184,953 - 60,251,458 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,184,961 - 60,251,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01164,285,570 - 64,350,871 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,702,554 - 56,769,394 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11156,760,142 - 56,826,983 (-)NCBI
Celera1154,735,652 - 54,802,154 (-)NCBICelera
Cytogenetic Map11q21NCBI
SLC9C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383112,140,898 - 112,294,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3112,140,898 - 112,294,227 (-)EnsemblGRCh38hg38GRCh38
GRCh373111,859,745 - 112,013,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363113,342,442 - 113,495,764 (-)NCBINCBI36hg18NCBI36
Build 343113,342,442 - 113,495,764NCBI
Celera3110,258,818 - 110,421,777 (-)NCBI
Cytogenetic Map3q13.2NCBI
HuRef3109,234,451 - 109,397,162 (-)NCBIHuRef
CHM1_13111,823,766 - 111,977,142 (-)NCBICHM1_1
T2T-CHM13v2.03114,862,010 - 115,015,274 (-)NCBI
Slc9c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391645,355,629 - 45,427,364 (+)NCBIGRCm39mm39
GRCm39 Ensembl1645,355,672 - 45,427,364 (+)Ensembl
GRCm381645,535,266 - 45,607,001 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1645,535,309 - 45,607,001 (+)EnsemblGRCm38mm10GRCm38
MGSCv371645,535,422 - 45,607,114 (+)NCBIGRCm37mm9NCBIm37
MGSCv361645,454,641 - 45,526,333 (+)NCBImm8
Celera1645,866,205 - 45,982,308 (+)NCBICelera
Cytogenetic Map16B5NCBI
Slc9c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542712,541,286 - 12,644,604 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542712,541,396 - 12,644,543 (-)NCBIChiLan1.0ChiLan1.0
SLC9C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13116,219,881 - 116,358,397 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3116,219,887 - 116,358,397 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03109,296,225 - 109,435,341 (-)NCBIMhudiblu_PPA_v0panPan3
SLC9C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13316,762,824 - 16,844,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3316,762,837 - 16,845,003 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3316,866,751 - 16,948,860 (-)NCBI
ROS_Cfam_1.03317,009,322 - 17,091,214 (-)NCBI
ROS_Cfam_1.0 Ensembl3317,009,335 - 17,091,186 (-)Ensembl
UMICH_Zoey_3.13316,812,599 - 16,894,749 (-)NCBI
UNSW_CanFamBas_1.03316,858,459 - 16,941,889 (-)NCBI
UU_Cfam_GSD_1.03317,409,076 - 17,491,071 (-)NCBI
Slc9c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602137,568,862 - 137,647,058 (+)NCBI
SpeTri2.0NW_004936834939,319 - 1,004,163 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13147,517,663 - 147,602,805 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113147,517,985 - 147,612,667 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213157,110,613 - 157,154,008 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC9C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12268,528,699 - 68,648,936 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604197,838,764 - 97,953,966 (-)NCBIVero_WHO_p1.0
Slc9c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473136,291,303 - 36,430,572 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473136,291,310 - 36,430,429 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:97
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000040908
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low 1 1 1 1 2 1
Below cutoff 2 9 2 10 2 1 1 1 9 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000040908   ⟹   ENSRNOP00000045235
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1155,217,545 - 55,278,285 (-)Ensembl
Rnor_6.0 Ensembl1160,190,782 - 60,249,165 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080148   ⟹   ENSRNOP00000074847
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1155,211,792 - 55,278,285 (-)Ensembl
Rnor_6.0 Ensembl1160,184,964 - 60,251,415 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086602   ⟹   ENSRNOP00000072593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1155,211,942 - 55,278,285 (-)Ensembl
Rnor_6.0 Ensembl1160,184,961 - 60,251,428 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093613
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1160,232,871 - 60,233,519 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114657   ⟹   ENSRNOP00000082098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1155,245,463 - 55,278,285 (-)Ensembl
RefSeq Acc Id: NM_001008762   ⟹   NP_001008762
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,211,792 - 55,278,285 (-)NCBI
Rnor_6.01160,184,973 - 60,251,458 (-)NCBI
Rnor_5.01164,285,570 - 64,350,871 (-)NCBI
Celera1154,735,652 - 54,802,154 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768722   ⟹   XP_008766944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,211,774 - 55,276,179 (-)NCBI
Rnor_6.01160,184,953 - 60,249,352 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597925   ⟹   XP_017453414
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,211,774 - 55,278,279 (-)NCBI
Rnor_6.01160,184,953 - 60,251,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597926   ⟹   XP_017453415
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,211,774 - 55,278,161 (-)NCBI
Rnor_6.01160,184,953 - 60,251,334 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597927   ⟹   XP_017453416
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,211,774 - 55,278,002 (-)NCBI
Rnor_6.01160,184,953 - 60,251,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088182   ⟹   XP_038944110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,211,774 - 55,278,279 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001008762   ⟸   NM_001008762
- UniProtKB: A0A0G2K3D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766944   ⟸   XM_008768722
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K3D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453414   ⟸   XM_017597925
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K3D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453415   ⟸   XM_017597926
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K3D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453416   ⟸   XM_017597927
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K3D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074847   ⟸   ENSRNOT00000080148
RefSeq Acc Id: ENSRNOP00000045235   ⟸   ENSRNOT00000040908
RefSeq Acc Id: ENSRNOP00000072593   ⟸   ENSRNOT00000086602
RefSeq Acc Id: XP_038944110   ⟸   XM_039088182
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000082098   ⟸   ENSRNOT00000114657

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K3D4-F1-model_v2 AlphaFold A0A0G2K3D4 1-1181 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698134
Promoter ID:EPDNEW_R8659
Type:initiation region
Name:Slc9c1_1
Description:solute carrier family 9 member C1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01160,251,379 - 60,251,439EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309075 AgrOrtholog
BioCyc Gene G2FUF-21381 BioCyc
Ensembl Genes ENSRNOG00000022007 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000045235.7 UniProtKB/TrEMBL
  ENSRNOP00000072593.2 UniProtKB/TrEMBL
  ENSRNOP00000074847 ENTREZGENE
  ENSRNOP00000074847.2 UniProtKB/TrEMBL
  ENSRNOP00000082098.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040908.7 UniProtKB/TrEMBL
  ENSRNOT00000080148 ENTREZGENE
  ENSRNOT00000080148.3 UniProtKB/TrEMBL
  ENSRNOT00000086602.2 UniProtKB/TrEMBL
  ENSRNOT00000114657.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.350 UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/TrEMBL
  Cation/H_exchanger_CPA1 UniProtKB/TrEMBL
  cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  N/H_exchanger_10 UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
KEGG Report rno:288117 UniProtKB/TrEMBL
NCBI Gene 288117 ENTREZGENE
PANTHER Cation/H_exchanger_cons-reg UniProtKB/TrEMBL
  PTHR10110:SF87 UniProtKB/TrEMBL
Pfam cNMP_binding UniProtKB/TrEMBL
  Na_H_Exchanger UniProtKB/TrEMBL
PhenoGen Slc9c1 PhenoGen
PROSITE CNMP_BINDING_3 UniProtKB/TrEMBL
Superfamily-SCOP cNMP_binding UniProtKB/TrEMBL
UniProt A0A0G2K3D4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K938_RAT UniProtKB/TrEMBL
  A0A8I5ZVB2_RAT UniProtKB/TrEMBL
  F1M7D9_RAT UniProtKB/TrEMBL
UniProt Secondary Q7M6Y8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc9c1  solute carrier family 9 member C1  Slc9c1  solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Slc9c1  solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1  Slc9a10  solute carrier family 9, member 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc9a10  solute carrier family 9, member 10  Gm610  gene model 610, (NCBI)  Symbol and Name updated 1299863 APPROVED
2005-12-06 Gm610  gene model 610, (NCBI)  Gm610_predicted  gene model 610, (NCBI) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Gm610_predicted  gene model 610, (NCBI) (predicted)      Symbol and Name status set to approved 70820 APPROVED