Son (SON DNA and RNA binding protein) - Rat Genome Database

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Gene: Son (SON DNA and RNA binding protein) Rattus norvegicus
Analyze
Symbol: Son
Name: SON DNA and RNA binding protein
RGD ID: 1309013
Description: Predicted to enable RNA binding activity and RS domain binding activity. Predicted to be involved in several processes, including mRNA processing; mitotic cytokinesis; and regulation of mRNA splicing, via spliceosome. Predicted to be located in nuclear speck. Orthologous to human SON (SON DNA and RNA binding protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC304092; Son cell proliferation protein; Son DNA binding protein; SON DNA-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21130,850,890 - 30,923,167 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1130,892,005 - 30,923,167 (+)Ensembl
Rnor_6.01131,806,598 - 31,837,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,806,618 - 31,837,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,415,323 - 35,446,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,621,000 - 31,652,151 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11131,660,060 - 31,691,231 (+)NCBI
Celera1130,559,447 - 30,590,598 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-methylcholine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-aza-2'-deoxycytidine  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dibenzo[a,l]pyrene  (ISO)
dieldrin  (EXP)
dioxygen  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
metformin  (EXP)
methapyrilene  (EXP)
miconazole  (ISO)
naphthalene  (ISO)
nickel dichloride  (EXP)
paracetamol  (ISO)
phenobarbital  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
propiconazole  (ISO)
raloxifene  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
tamibarotene  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear speck  (IEA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:10509013   PMID:12477932   PMID:15798186   PMID:21504830   PMID:22658674   PMID:22681889   PMID:27545680   PMID:31505169  


Genomics

Comparative Map Data
Son
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21130,850,890 - 30,923,167 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1130,892,005 - 30,923,167 (+)Ensembl
Rnor_6.01131,806,598 - 31,837,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,806,618 - 31,837,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,415,323 - 35,446,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,621,000 - 31,652,151 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11131,660,060 - 31,691,231 (+)NCBI
Celera1130,559,447 - 30,590,598 (+)NCBICelera
Cytogenetic Map11q11NCBI
SON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2133,543,038 - 33,577,481 (+)EnsemblGRCh38hg38GRCh38
GRCh382133,543,038 - 33,577,481 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372134,915,344 - 34,949,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,837,220 - 33,871,682 (+)NCBINCBI36hg18NCBI36
Build 342133,837,219 - 33,871,682NCBI
Celera2120,114,984 - 20,149,446 (+)NCBI
Cytogenetic Map21q22.11ENTREZGENE
HuRef2120,393,812 - 20,428,237 (+)NCBIHuRef
CHM1_12134,478,027 - 34,512,464 (+)NCBICHM1_1
Son
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,444,712 - 91,476,080 (+)NCBIGRCm39mm39
GRCm39 Ensembl1691,444,394 - 91,476,109 (+)Ensembl
GRCm381691,647,824 - 91,679,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,647,506 - 91,679,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv371691,648,069 - 91,679,437 (+)NCBIGRCm37mm9NCBIm37
MGSCv361691,536,739 - 91,568,048 (+)NCBImm8
Celera1692,724,593 - 92,757,782 (+)NCBICelera
Cytogenetic Map16C3.3- C4NCBI
cM Map1653.22NCBI
Son
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,974,725 - 33,006,297 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540732,974,656 - 33,007,073 (+)NCBIChiLan1.0ChiLan1.0
SON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12133,282,691 - 33,317,063 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2133,282,910 - 33,316,007 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02119,910,024 - 19,944,511 (+)NCBIMhudiblu_PPA_v0panPan3
SON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13128,165,758 - 28,198,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3128,163,496 - 28,196,420 (+)NCBI
ROS_Cfam_1.03128,370,779 - 28,403,717 (+)NCBI
UMICH_Zoey_3.13128,237,644 - 28,270,539 (+)NCBI
UNSW_CanFamBas_1.03128,251,590 - 28,284,083 (+)NCBI
UU_Cfam_GSD_1.03128,751,345 - 28,784,243 (+)NCBI
Son
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,714,897 - 28,746,647 (+)NCBI
SpeTri2.0NW_0049365008,721,155 - 8,752,906 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13197,162,114 - 197,194,078 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113197,162,075 - 197,193,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213206,972,806 - 207,004,139 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SON
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,610,076 - 58,643,758 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660711,111,733 - 1,145,426 (-)NCBIVero_WHO_p1.0
Son
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474521,762,273 - 21,798,587 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH127092  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,922,750 - 30,922,972 (+)MAPPERmRatBN7.2
mRatBN7.2518,469,521 - 18,469,743 (-)MAPPERmRatBN7.2
mRatBN7.2518,469,521 - 18,469,743 (+)MAPPERmRatBN7.2
mRatBN7.21130,922,750 - 30,922,972 (-)MAPPERmRatBN7.2
Rnor_6.01131,837,353 - 31,837,574NCBIRnor6.0
Rnor_6.0518,442,651 - 18,442,872NCBIRnor6.0
Rnor_5.0523,233,857 - 23,234,078UniSTSRnor5.0
Rnor_5.01135,446,086 - 35,446,307UniSTSRnor5.0
RGSC_v3.4518,796,322 - 18,796,543UniSTSRGSC3.4
RGSC_v3.41131,651,735 - 31,651,956UniSTSRGSC3.4
Celera1130,590,182 - 30,590,403UniSTS
Celera517,788,011 - 17,788,232UniSTS
Cytogenetic Map5q12UniSTS
Cytogenetic Map11q11UniSTS
BF403131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,909,898 - 30,910,083 (+)MAPPERmRatBN7.2
Rnor_6.01131,824,501 - 31,824,685NCBIRnor6.0
Rnor_5.01135,433,234 - 35,433,418UniSTSRnor5.0
RGSC_v3.41131,638,883 - 31,639,067UniSTSRGSC3.4
Celera1130,577,330 - 30,577,514UniSTS
RH 3.4 Map11178.4UniSTS
Cytogenetic Map11q11UniSTS
SON  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2518,469,460 - 18,469,551 (-)MAPPERmRatBN7.2
mRatBN7.21130,922,942 - 30,923,040 (+)MAPPERmRatBN7.2
Rnor_6.01131,837,545 - 31,837,642NCBIRnor6.0
Rnor_5.01135,446,278 - 35,446,375UniSTSRnor5.0
RGSC_v3.41131,651,927 - 31,652,024UniSTSRGSC3.4
Celera1130,590,374 - 30,590,471UniSTS
Cytogenetic Map11q11UniSTS
AU067731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,907,067 - 30,907,175 (+)MAPPERmRatBN7.2
Rnor_6.01131,821,670 - 31,821,777NCBIRnor6.0
Rnor_5.01135,430,403 - 35,430,510UniSTSRnor5.0
RGSC_v3.41131,636,052 - 31,636,159UniSTSRGSC3.4
Celera1130,574,499 - 30,574,606UniSTS
Cytogenetic Map11q11UniSTS
RH139817  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,923,382 - 30,923,593 (+)MAPPERmRatBN7.2
Rnor_6.01131,837,985 - 31,838,195NCBIRnor6.0
Rnor_5.01135,446,718 - 35,446,928UniSTSRnor5.0
RGSC_v3.41131,652,367 - 31,652,577UniSTSRGSC3.4
Celera1130,590,814 - 30,591,024UniSTS
RH 3.4 Map11176.7UniSTS
Cytogenetic Map11q11UniSTS
GDB:335409  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,922,942 - 30,923,111 (+)MAPPERmRatBN7.2
mRatBN7.2257,767,720 - 57,767,887 (+)MAPPERmRatBN7.2
Rnor_6.0257,873,107 - 57,873,273NCBIRnor6.0
Rnor_6.01131,837,545 - 31,837,713NCBIRnor6.0
Rnor_5.01135,446,278 - 35,446,446UniSTSRnor5.0
Rnor_5.0279,360,669 - 79,360,835UniSTSRnor5.0
RGSC_v3.4258,282,464 - 58,282,630UniSTSRGSC3.4
RGSC_v3.41131,651,927 - 31,652,095UniSTSRGSC3.4
Celera1130,590,374 - 30,590,542UniSTS
Celera253,380,092 - 53,380,258UniSTS
Cytogenetic Map11q11UniSTS
Cytogenetic Map2q16UniSTS
REN85702  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,083 - 30,899,336 (+)MAPPERmRatBN7.2
Rnor_6.01131,813,686 - 31,813,938NCBIRnor6.0
Rnor_5.01135,422,419 - 35,422,671UniSTSRnor5.0
RGSC_v3.41131,628,068 - 31,628,320UniSTSRGSC3.4
Celera1130,566,515 - 30,566,767UniSTS
Cytogenetic Map11q11UniSTS
REN85704  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,557 - 30,899,807 (+)MAPPERmRatBN7.2
Rnor_6.01131,814,160 - 31,814,409NCBIRnor6.0
Rnor_5.01135,422,893 - 35,423,142UniSTSRnor5.0
RGSC_v3.41131,628,542 - 31,628,791UniSTSRGSC3.4
Celera1130,566,989 - 30,567,238UniSTS
Cytogenetic Map11q11UniSTS
REN85703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,329 - 30,899,579 (+)MAPPERmRatBN7.2
Rnor_6.01131,813,932 - 31,814,181NCBIRnor6.0
Rnor_5.01135,422,665 - 35,422,914UniSTSRnor5.0
RGSC_v3.41131,628,314 - 31,628,563UniSTSRGSC3.4
Celera1130,566,761 - 30,567,010UniSTS
Cytogenetic Map11q11UniSTS
REN85711  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,901,055 - 30,901,283 (+)MAPPERmRatBN7.2
Rnor_6.01131,815,658 - 31,815,885NCBIRnor6.0
Rnor_5.01135,424,391 - 35,424,618UniSTSRnor5.0
RGSC_v3.41131,630,040 - 31,630,267UniSTSRGSC3.4
Celera1130,568,487 - 30,568,714UniSTS
Cytogenetic Map11q11UniSTS
REN85712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,901,250 - 30,901,486 (+)MAPPERmRatBN7.2
Rnor_6.01131,815,853 - 31,816,088NCBIRnor6.0
Rnor_5.01135,424,586 - 35,424,821UniSTSRnor5.0
RGSC_v3.41131,630,235 - 31,630,470UniSTSRGSC3.4
Celera1130,568,682 - 30,568,917UniSTS
Cytogenetic Map11q11UniSTS
REN85731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,905,580 - 30,905,837 (+)MAPPERmRatBN7.2
Rnor_6.01131,820,183 - 31,820,439NCBIRnor6.0
Rnor_5.01135,428,916 - 35,429,172UniSTSRnor5.0
RGSC_v3.41131,634,565 - 31,634,821UniSTSRGSC3.4
Celera1130,573,012 - 30,573,268UniSTS
Cytogenetic Map11q11UniSTS
REN85732  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,905,813 - 30,906,074 (+)MAPPERmRatBN7.2
Rnor_6.01131,820,416 - 31,820,676NCBIRnor6.0
Rnor_5.01135,429,149 - 35,429,409UniSTSRnor5.0
RGSC_v3.41131,634,798 - 31,635,058UniSTSRGSC3.4
Celera1130,573,245 - 30,573,505UniSTS
Cytogenetic Map11q11UniSTS
REN85733  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,906,050 - 30,906,305 (+)MAPPERmRatBN7.2
Rnor_6.01131,820,653 - 31,820,907NCBIRnor6.0
Rnor_5.01135,429,386 - 35,429,640UniSTSRnor5.0
RGSC_v3.41131,635,035 - 31,635,289UniSTSRGSC3.4
Celera1130,573,482 - 30,573,736UniSTS
Cytogenetic Map11q11UniSTS
MARC_11511-11512:1001088403:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,900,703 - 30,901,164 (+)MAPPERmRatBN7.2
Rnor_6.01131,815,306 - 31,815,766NCBIRnor6.0
Rnor_5.01135,424,039 - 35,424,499UniSTSRnor5.0
RGSC_v3.41131,629,688 - 31,630,148UniSTSRGSC3.4
Celera1130,568,135 - 30,568,595UniSTS
Cytogenetic Map11q11UniSTS
RH124814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2518,469,458 - 18,469,554 (-)MAPPERmRatBN7.2
mRatBN7.21130,922,939 - 30,923,035 (+)MAPPERmRatBN7.2
Rnor_6.01131,837,542 - 31,837,637NCBIRnor6.0
Rnor_5.01135,446,275 - 35,446,370UniSTSRnor5.0
RGSC_v3.41131,651,924 - 31,652,019UniSTSRGSC3.4
Celera1130,590,371 - 30,590,466UniSTS
Cytogenetic Map11q11UniSTS
ECD01730  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,165 - 30,900,021 (+)MAPPERmRatBN7.2
mRatBN7.21130,899,165 - 30,900,052 (+)MAPPERmRatBN7.2
Rnor_6.01131,813,768 - 31,814,654NCBIRnor6.0
Rnor_6.01131,813,768 - 31,814,623NCBIRnor6.0
Rnor_5.01135,422,501 - 35,423,387UniSTSRnor5.0
Rnor_5.01135,422,501 - 35,423,356UniSTSRnor5.0
RGSC_v3.41131,628,150 - 31,629,005UniSTSRGSC3.4
RGSC_v3.41131,628,150 - 31,629,036UniSTSRGSC3.4
Celera1130,566,597 - 30,567,483UniSTS
Celera1130,566,597 - 30,567,452UniSTS
Cytogenetic Map11q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:603
Count of miRNA genes:288
Interacting mature miRNAs:366
Transcripts:ENSRNOT00000002769, ENSRNOT00000043410
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005491036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005491037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_358129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_358130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002769   ⟹   ENSRNOP00000002769
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,015 - 30,923,167 (+)Ensembl
Rnor_6.0 Ensembl1131,806,618 - 31,837,763 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000043410   ⟹   ENSRNOP00000044186
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,015 - 30,909,159 (+)Ensembl
Rnor_6.0 Ensembl1131,806,618 - 31,823,761 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101000   ⟹   ENSRNOP00000094650
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,005 - 30,916,133 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106626   ⟹   ENSRNOP00000089452
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,005 - 30,923,004 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108078   ⟹   ENSRNOP00000087454
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,005 - 30,907,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108574   ⟹   ENSRNOP00000096891
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,015 - 30,923,167 (+)Ensembl
RefSeq Acc Id: NM_001170327   ⟹   NP_001163798
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,892,015 - 30,923,167 (+)NCBI
Rnor_6.01131,806,618 - 31,837,769 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
RGSC_v3.41131,621,000 - 31,652,151 (+)RGD
Celera1130,559,447 - 30,590,598 (+)RGD
Sequence:
RefSeq Acc Id: NM_001170328   ⟹   NP_001163799
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,892,015 - 30,909,159 (+)NCBI
Rnor_6.01131,806,618 - 31,823,761 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
RGSC_v3.41131,621,000 - 31,652,151 (+)RGD
Celera1130,559,447 - 30,576,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248064   ⟹   XP_006248126
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,891,917 - 30,923,167 (+)NCBI
Rnor_6.01131,806,598 - 31,837,635 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248065   ⟹   XP_006248127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,891,917 - 30,907,482 (+)NCBI
Rnor_6.01131,806,598 - 31,822,084 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088422   ⟹   XP_038944350
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,850,890 - 30,923,167 (+)NCBI
RefSeq Acc Id: XM_039088423   ⟹   XP_038944351
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,891,917 - 30,916,869 (+)NCBI
RefSeq Acc Id: XM_039088424   ⟹   XP_038944352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,898,558 - 30,923,163 (+)NCBI
RefSeq Acc Id: XR_005491036
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,891,917 - 30,922,299 (+)NCBI
RefSeq Acc Id: XR_005491037
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,891,917 - 30,921,571 (+)NCBI
RefSeq Acc Id: XR_358130
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21130,891,917 - 30,923,167 (+)NCBI
Rnor_6.01131,806,598 - 31,837,635 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001163798   ⟸   NM_001170327
- Peptide Label: isoform 1
- UniProtKB: F1MAQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001163799   ⟸   NM_001170328
- Peptide Label: isoform 2
- UniProtKB: E9PTE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248126   ⟸   XM_006248064
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248127   ⟸   XM_006248065
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000044186   ⟸   ENSRNOT00000043410
RefSeq Acc Id: ENSRNOP00000002769   ⟸   ENSRNOT00000002769
RefSeq Acc Id: XP_038944350   ⟸   XM_039088422
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038944351   ⟸   XM_039088423
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944352   ⟸   XM_039088424
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000087454   ⟸   ENSRNOT00000108078
RefSeq Acc Id: ENSRNOP00000094650   ⟸   ENSRNOT00000101000
RefSeq Acc Id: ENSRNOP00000096891   ⟸   ENSRNOT00000108574
RefSeq Acc Id: ENSRNOP00000089452   ⟸   ENSRNOT00000106626
Protein Domains
DRBM   G-patch

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698060
Promoter ID:EPDNEW_R8585
Type:initiation region
Name:Son_1
Description:Son DNA binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01131,806,631 - 31,806,691EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 35421832 35421833 C T snv NIG-III/Hok (KyushuU), DOB/Oda (KyushuU), LEW/NCrl (KNAW), LEW/Crl (KNAW), FHL/EurMcwi (KNAW), FHH/EurMcwi (KNAW), MHS/Gib (KNAW), WN/N (KNAW), SBH/Ygl (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), SBH/Ygl (KNAW)
11 35422209 35422210 G C snv LE/OrlBarth (UDEL), LE/Stm (SOLiD) (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (KyushuU)
11 35422869 35422870 C A snv F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), GK/Ox (KNAW), M520/N (KNAW), MNS/Gib (KNAW), SBN/Ygl (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), SDLEF7/Barth (UDEL), IS/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), ZFDM (KyushuU), DA/BklArbNsi (KNAW), BBDP/WorN (KNAW), ACI/EurMcwi (KNAW), ACI/N (KNAW), WAG/Rij (KNAW), SS/JrHsdMcwi (KNAW), SS/Jr (KNAW), SR/JrHsd (KNAW), LN/MavRrrc (KNAW), LL/MavRrrc (KNAW), LH/MavRrrc (KNAW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), GH/OmrMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 30855853 30855854 C T snv BXH3/CubMcwi (2020), FXLE16/Stm (2020), HXB10/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), LEXF10A/StmMcwi (2020), HXB2/IpcvMcwi (2019), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), HXB31/IpcvMcwi (2019), LE/Stm (2019)
11 30898497 30898498 C T snv WN/N (2020), MR/N (2020), FHH/EurMcwi (2019), LEW/Crl (2019)
11 30898874 30898875 G C snv LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), FXLE16/Stm (2020), LEXF10A/StmMcwi (2020), LE/Stm (2019), LEXF4/Stm (2020)
11 30899534 30899535 C A snv LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LEXF11/Stm (2020), GK/FarMcwi (2019), FXLE18/Stm (2020), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), BUF/N (2020), ACI/N (2020), ACI/EurMcwi (2019), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), PVG/Seac (2019), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 31813099 31813100 C T snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), WN/N (2020), MR/N (2020), LEW/Crl (2019), FHH/EurMcwi (2019), SBH/Ygl (RGD), MHS/Gib (RGD), LEW/NCrlBR (RGD), LEW/Crl (RGD), SBH/Ygl (MCW), WN/N (MCW), FHH/EurMcwi (RGD), FHL/EurMcwi (RGD)
11 31813476 31813477 G C snv LEXF1C/Stm (2019), LEXF1A/Stm (2019), FXLE16/Stm (2020), LE/Stm (RGD), LEXF10A/StmMcwi (2020), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LE/Stm (2019)
11 31814136 31814137 C A snv CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), ACI/EurMcwi (RGD), BBDP/Wor (RGD), F344/NCrl (RGD), GK/Ox (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MNS/Gib (RGD), SBN/Ygl (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), WAG/Rij (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEXF11/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 31627481 31627482 C T snv LCR/2Mco (UMich), FHH/EurMcwi (MCW), HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), SBH/Ygl (ICL), MHS/Gib (ICL), LEW/NCrl (ICL), LEW/Crl (ICL), FHL/EurMcwi (ICL), FHH/EurMcwi (ICL), WN/N (KNAW), FHH/EurMcwi (MDC), FHL/EurMcwi (MCW)
11 31627858 31627859 G C snv LE/Stm (ICL), LE/Stm (KNAW)
11 31628518 31628519 C A snv SR/JrHsd (ICL), SS/Jr (ICL), SS/JrHsdMcwi (ICL), WAG/Rij (ICL), WKY/NCrl (ICL), WKY/Gcrc (ICL), WKY/NHsd (ICL), HCR/1Mco (UMich), LCR/1Mco (UMich), LCR/2Mco (UMich), DA/BklArbNsi (ICAHN), F344/NHsd (ICAHN), SBN/Ygl (ICL), MNS/Gib (ICL), LN/MavRrrc (ICL), LL/MavRrrc (ICL), LH/MavRrrc (ICL), GK/Ox (ICL), F344/NCrl (ICL), BBDP/WorN (ICL), ACI/EurMcwi (ICL), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), F344/NRrrc (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MDC), SS/JrHsdMcwi (MCW), ACI/EurMcwi (MCW), SR/JrHsd (MCW)
11 31629415 31629416 G C snv BN/NHsdMcwi (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309013 AgrOrtholog
Ensembl Genes ENSRNOG00000002021 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002769 UniProtKB/TrEMBL
  ENSRNOP00000044186 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002769 UniProtKB/TrEMBL
  ENSRNOT00000043410 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6888991 IMAGE-MGC_LOAD
InterPro dsRNA-bd-like_dom UniProtKB/TrEMBL
  G_patch_dom UniProtKB/TrEMBL
  SON UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:304092 UniProtKB/TrEMBL
MGC_CLONE MGC:73000 IMAGE-MGC_LOAD
NCBI Gene 304092 ENTREZGENE
PANTHER PTHR46528 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
PhenoGen Son PhenoGen
PROSITE DS_RBD UniProtKB/TrEMBL
  G_PATCH UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt E9PTE1 ENTREZGENE, UniProtKB/TrEMBL
  F1MAQ7 ENTREZGENE, UniProtKB/TrEMBL
  Q6PDU3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Son  SON DNA and RNA binding protein  Son  Son DNA binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-28 Son  Son DNA binding protein  Son  Son cell proliferation protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Son  Son cell proliferation protein  Son_predicted  Son cell proliferation protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Son_predicted  Son cell proliferation protein (predicted)      Symbol and Name status set to approved 70820 APPROVED