Mmp15 (matrix metallopeptidase 15)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Mmp15 (matrix metallopeptidase 15) Rattus norvegicus

Analyze

Symbol:

Mmp15

Name:

matrix metallopeptidase 15

RGD ID:

1308937

Description:

Predicted to enable metalloendopeptidase activity. Involved in response to estradiol. Predicted to be located in extracellular matrix. Predicted to be integral component of plasma membrane. Orthologous to human MMP15 (matrix metallopeptidase 15); INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC291848; matrix metalloproteinase 15; matrix metalloproteinase-15

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MMP15 (matrix metallopeptidase 15)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mmp15 (matrix metallopeptidase 15)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mmp15 (matrix metallopeptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MMP15 (matrix metallopeptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MMP15 (matrix metallopeptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mmp15 (matrix metallopeptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MMP15 (matrix metallopeptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MMP15 (matrix metallopeptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mmp15 (matrix metallopeptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MMP15 (matrix metallopeptidase 15)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mmp15 (matrix metallopeptidase 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mmp15a (matrix metallopeptidase 15a)	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	mmp15b (matrix metallopeptidase 15b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Mmp1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	zmp-5	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Mmp2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	zmp-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	9,663,449 - 9,684,943 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	19	9,663,449 - 9,684,943 (-)	Ensembl
Rnor_6.0	19	10,079,881 - 10,101,380 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,079,765 - 10,101,451 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	10,064,056 - 10,085,300 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	10,122,553 - 10,143,853 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	10,128,673 - 10,167,980 (-)	NCBI
Celera	19	9,556,223 - 9,577,713 (-)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Liver Reperfusion Injury (IEP)

Mammary Neoplasms, Experimental (ISO)

prostate cancer (ISO)

Spontaneous Abortions (ISO)

transitional cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (EXP)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

acrylamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP,ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

butanal (ISO)

candesartan (EXP)

carbon nanotube (ISO)

chloroprene (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

diazinon (ISO)

dioxygen (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethanol (ISO)

fulvestrant (ISO)

genistein (ISO)

hydroquinone (ISO)

isoprenaline (ISO)

methapyrilene (EXP)

methotrexate (ISO)

N-nitrosodimethylamine (EXP)

nickel sulfate (ISO)

orphenadrine (EXP)

paracetamol (EXP,ISO)

pentanal (ISO)

potassium bromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propanal (ISO)

propiconazole (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

collagen catabolic process (IBA)

endodermal cell differentiation (ISO)

extracellular matrix organization (IBA)

proteolysis (IEA)

response to estradiol (IEP)

Cellular Component

extracellular matrix (IEA)

integral component of plasma membrane (IEA)

Molecular Function

metalloendopeptidase activity (IBA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Insulin Receptor Substrate 2 plays Important Roles in 17betaEstradiol Induced Bone Formation.	Bu YH, etal., J Endocrinol Invest. 2009 May 26.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Expression and tissue localization of membrane-types 1, 2, and 3 matrix metalloproteinases in human urothelial carcinomas.	Kitagawa Y, etal., J Urol. 1998 Oct;160(4):1540-5.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Identification of degradome components associated with prostate cancer progression by expression analysis of human prostatic tissues.	Riddick AC, etal., Br J Cancer. 2005 Jun 20;92(12):2171-80.
9.	Expression pattern of four membrane-type matrix metalloproteinases in the normal and diseased mouse mammary gland.	Szabova L, etal., J Cell Physiol. 2005 Oct;205(1):123-32.
10.	Zhonghua wai ke za zhi [Chinese journal of surgery]	Zhao D and Yang BX, Zhonghua Wai Ke Za Zhi. 2009 Mar 1;47(5):373-6.

Additional References at PubMed

PMID:23154389

Genomics

Comparative Map Data

Mmp15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	9,663,449 - 9,684,943 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	19	9,663,449 - 9,684,943 (-)	Ensembl
Rnor_6.0	19	10,079,881 - 10,101,380 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,079,765 - 10,101,451 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	10,064,056 - 10,085,300 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	10,122,553 - 10,143,853 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	10,128,673 - 10,167,980 (-)	NCBI
Celera	19	9,556,223 - 9,577,713 (-)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

MMP15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	58,025,754 - 58,046,901 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	16	58,025,754 - 58,046,901 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	58,059,658 - 58,080,805 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,616,783 - 56,638,306 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	16	56,616,782 - 56,638,303	NCBI
Celera	16	42,556,594 - 42,578,117 (+)	NCBI
Cytogenetic Map	16	q21	NCBI
HuRef	16	43,926,416 - 43,947,940 (+)	NCBI		HuRef
CHM1_1	16	59,466,356 - 59,487,878 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,821,030 - 63,842,175 (+)	NCBI

Mmp15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	96,078,924 - 96,100,921 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	96,078,896 - 96,101,708 (+)	Ensembl
GRCm38	8	95,352,296 - 95,374,293 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,352,268 - 95,375,080 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	97,876,237 - 97,898,193 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	98,241,466 - 98,263,422 (+)	NCBI			mm8
Celera	8	99,673,352 - 99,695,550 (+)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	47.12	NCBI

Mmp15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,584,780 - 15,601,739 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	15,584,206 - 15,603,162 (+)	NCBI	ChiLan1.0	ChiLan1.0

MMP15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	57,436,611 - 57,457,122 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	57,433,813 - 57,457,122 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	38,304,856 - 38,326,193 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MMP15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,501,783 - 58,512,507 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,504,848 - 58,512,371 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,133,201 - 55,153,695 (-)	NCBI
ROS_Cfam_1.0	2	59,042,165 - 59,062,706 (-)	NCBI
ROS_Cfam_1.0 Ensembl	2	59,042,168 - 59,064,307 (-)	Ensembl
UMICH_Zoey_3.1	2	55,873,315 - 55,893,796 (-)	NCBI
UNSW_CanFamBas_1.0	2	56,881,102 - 56,901,624 (-)	NCBI
UU_Cfam_GSD_1.0	2	57,774,141 - 57,794,621 (-)	NCBI

Mmp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,617,444 - 49,636,491 (-)	NCBI
SpeTri2.0	NW_004936475	9,951,876 - 9,971,631 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MMP15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,890,884 - 19,918,244 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	19,890,867 - 19,912,941 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,937,693 - 17,958,870 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MMP15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,961,288 - 43,982,182 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	5	43,960,891 - 43,982,261 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666047	32,196,602 - 32,217,350 (-)	NCBI	Vero_WHO_p1.0

Mmp15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,130,128 - 28,147,381 (-)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624746	28,128,687 - 28,147,964 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH139389

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	9,663,567 - 9,663,643 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	10,080,000 - 10,080,075	NCBI	Rnor6.0
Rnor_5.0	19	10,064,175 - 10,064,250	UniSTS	Rnor5.0
RGSC_v3.4	19	10,122,672 - 10,122,747	UniSTS	RGSC3.4
Celera	19	9,556,342 - 9,556,417	UniSTS
RH 3.4 Map	19	96.7	UniSTS
Cytogenetic Map	19	p13	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24688055	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27355345	Rat
631678	Cm9	Cardiac mass QTL 9	4.27	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	19	1	28982497	Rat
631681	Cm12	Cardiac mass QTL 12	3.33	0.00053	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	19	1	28982497	Rat
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	523
Count of miRNA genes:	223
Interacting mature miRNAs:	275
Transcripts:	ENSRNOT00000017629
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	14	14		14	6	9	68	29	29	11	6
Low			43	27	19	27	2	2	6	6	11		2
Below cutoff											1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CB545319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB773519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK357842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000017629 ⟹ ENSRNOP00000017629

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	9,663,449 - 9,684,943 (-)	Ensembl
Rnor_6.0 Ensembl	19	10,079,765 - 10,101,451 (-)	Ensembl

RefSeq Acc Id:

NM_001106168 ⟹ NP_001099638

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	9,663,449 - 9,684,943 (-)	NCBI
Rnor_6.0	19	10,079,881 - 10,101,380 (-)	NCBI
Rnor_5.0	19	10,064,056 - 10,085,300 (-)	NCBI
RGSC_v3.4	19	10,122,553 - 10,143,853 (-)	RGD
Celera	19	9,556,223 - 9,577,713 (-)	RGD

Sequence:

show sequence

GGCGGGCTCGTCGCTCTCTCAGACCAGTTCCCTGCGCCCCTCCCGGGACTGCCTGGGGATCCGG
GTCCGATTGGGCGCGGCAGCTAGTGGAGTCACCAGAGGGAAGCGCGCGCTCTGGGCAGCACGGG
GGAACCTGGGCATGGACAGAGAGAGCAGGGCGCGCAGGGGGCGCCGCGGGACCGGGCGGCCGGA
TCGCTGAGCCAGACAAAGGCTCTGGAGTTGGGCTTGCTCTCGGGGGGCCGGGGCCAGGGCGCAC
CGCGCCGACGCTGCAAGACTCTGCGGCGTGCAGCTCGGCCGGTCCCCTTCTCCAGCGGGCGAGT
CCCCGCGTGCCCCGACCTGCCCTGCCCGCTTCTCACCCGGTTTGGGAATTTGCAGAGGGGACCT
GAGCTGCTCCGGCAGGCACGGGGAGACCGAGGTCCGCCGCGCGCCCGCGGGGCTGGGAGCCAGG
GAGCGTCGCAAGTTTTCCAGCCGCGTGCGAGAACGCGGTGCTGGCCAGCGAGCTAGCCCGCGTG
CAGCGCTCCGGACCCGGCTGGCTGCCGAAGAGCATGGGCAGCGACCGGAGCGCACTCGGACGGC
CAGGCTGCGCTGGCAGCTGCCTCAGCAGTCGAGCTTCGCTGCTCCTGCTGCTACTGGTGCTTCT
GGACTGCCTGGGCGGCGGTACAGCGTCTGAAGACGCCGAAGTATACGCCGCTGAGAACTGGCTG
CGACTCTATGGCTACCTACCCCAGCCTAGCCGCCACATGTCCACCATGCGTTCTGCCCAGATCC
TGGCTTCTGCCCTTGCCGAGATGCAGAGTTTCTATGGGATCCCTGTCACGGGTGTGCTTGATGA
AGAGACAAAAACGTGGATGAAGCGACCCCGCTGTGGGGTTCCTGATCAGTTTGGGGTACGTGTG
AAAGCCAACCTGCGGCGGCGGCGGAGGCGTTACACCCTGACAGGAAAGACATGGAGCAACTACC
ATCTGACCTTCAGCATCCAGAACTACACAGAGAAGCTGGGCTGGTACAACTCAATGGAGGCGGT
GCGCAGGGCTTTCCAAGTGTGGGAGCAGGTCACGCCCTTGGTCTTCCAGGAAGTACCCTATGAC
GACATTCGGCTGCGAAGGCGAGCGGAGGCTGACATCATGGTACTCTTTGCCTCTGGCTTCCATG
GCGACAGCTCACCGTTTGATGGCGTGGGTGGCTTTCTGGCCCACGCCTATTTCCCCGGCCCTGG
TCTGGGTGGGGACACCCATTTCGACGCAGATGAACCCTGGACCTTCTCCAGCACTGACCTGCAT
GGAATCAGCCTCTTTCTGGTGGCTGTGCATGAGTTGGGCCACGCACTAGGACTGGAGCACTCAA
GCAACCCCAGCGCTATCATGGCACCCTTCTACCAGTGGATGGACACTGACAACTTCCAGCTGCC
CGAGGATGACCTTCGGGGCATCCAGCAGCTGTATGGCTCCCCAGATGGTAAGCCACAGCCCACC
CGGCCTCTCCCCACGGTGAGGCCCCGGCGGCCAGGACGGCCAGACCACCAGCCACCTCGGCCTC
CCCAGCCACCACATCCAGGTGGGAAGCCAGAGAGGCCCCCCAAACCAGGGCCCCCACCCCAGCC
CCGAGCCACAGAGAGGCCTGACCAGTATGGCCCCAACATCTGCGATGGCAACTTCGACACAGTG
GCTGTACTCCGTGGAGAGATGTTTGTGTTCAAGGGCCGCTGGTTCTGGCGAGTCCGGCACAACC
GTGTTCTGGACAACTACCCCATGCCAATTGGCCACTTCTGGCGTGGCCTGCCTGGGAACATTAG
TGCTGCCTATGAACGTCAGGATGGGCATTTCGTCTTCTTCAAAGGTAACCGCTACTGGCTTTTC
CGAGAAGCCAATCTGGAGCCTGGCTACCCGCAGCCACTGAGCAGCTATGGTACAGACATCCCCT
ATGACCGCATTGACACAGCCATCTGGTGGGAGCCCACAGGGCACACCTTCTTCTTTCAAGCTGA
CAGGTACTGGCGCTTCAATGAGGAGACACAGCATGGAGACCCTGGCTACCCCAAGCCCATCAGT
GTCTGGCAAGGGATCCCCAACTCTCCCAAAGGGGCCTTCCTCAGCAACGATGCAGCCTACACCT
ACTTCTACAAGGGCACCAAGTACTGGAAATTCAACAACGAGCGCCTGCGGATGGAACCCGGCCA
CCCCAAATCCATCCTGCGGGACTTCATGGGCTGCCAGGAGCACGTGGAGCCCCGATCGCGATGG
CCCGATGTGGCTCGTCCGCCCTTCAACCCCAACGGGGGTGCAGAGCCTGAGACAGAGGATGACA
GCAAGGAAGAGGATGTGGGAGACAAGGATGAGGGCAGCCGCGTGGTGGTGCAGATGGAGGAGGT
GGTTCGGACAGTGAACGTGGTGATGGTGTTGGTCCCCTTGCTGTTGTTGCTCTGCATACTGGGC
CTGGCTTTCGCTCTGGTGCAGATGCAGCGCAAGGGCGCACCCCGCATGCTGCTCTACTGCAAGC
GCTCGCTGCAGGAGTGGGTGTGATCACGTGGCACCCGCAGCACCCGGTGCTCAGGTCTGCAGGG
TCTGTGTGGACCCGGATGCTCCGCGCGGCGCGGCGGGACGCCCTCCTAGCCACACACTCCCCCT
CAGTCCAGCCCCTGCCCTCCTTTATTTATGCCCAGGGGTCTTTTCTCTTGGGCACCCACCCTTT
GTTTCTGCTTTCCTGACTCCGGCCAGGAGATGCTTAGAGATCTCTGAGTGTACCGCTCCAGGCA
GGAACTAAGGGACAGAGGCTCACACCTCTGGAAGACGGACAGATGGCAGAGGGCTGGGAAGCTT
CTCCAGCTCTGGCCCTTGAGCCTGAACCTCTCTCCTCCCGCGTCTGAGCTGTGTTTGCCTTGAA
GGAGCCCAGCTGGGGCTCTACCCTCCTGAATTTGCCTTAGGGAGCGTACGGCCCAGGGGCCGCC
CTGATAACCTTGAGACTTGGTTCCGTCTTCTTAGGTTTACTAAGAAGCCCAGAATCCTGAAAGC
CCTCCCCAATCCTGGCATCGGGCAACTCCCACTCACCCCTGGGCTTGCAGCTTCCTTTCCTCTA
GGAAGAGGCCCTGACCCGTCTCACCAAGGACCAAAGGGAGCCCGCGAAGCTCCCCTCCCAGTGC
TAGTAACTAAGCTCCTCCTTCCCTAGACTGCCCATGTTCTCTTTCATTACCCCAAAGGTCTCAG
GAGGCTGGGCACTCCCTCTACCCTCTGGCTTCTGCTGTCCTTGTCCCAACCTTTGGGGACATGG
GGCAGACACACATACTAGGGTACCAGAGGTCCCCAGTCGATTCCTGGCAGTGTGGATGTTCAGC
AGGTCCCAGACCAGACTATGGACTTCCTCCCTTCCAGATTCCTGTTCCCACACAACACTACTAG
GCTCAGGCCAGCAGCTCACCCTACACAGAGCCTGTGGAACCCCCAAAGGAATCCACTAAGGCCT
GGGAAGTGTCCTAGGGGTGAAAGGGGGGCCCCCCTTCCTCTCTTCATCCTGGAGTCAGCAGGAG
GCTTCTGTGGGAAATGGTACTGTAACAGCTGGCTCTGGCTCTTCTGCCTCCTAAACCTTGAGGG
CGGCCACCCAGGGTCCTCTGGGTCACCGCCTCTCTGCAAGTGGTGGATTCTTAGAGCCTGGCAC
TAGAGGTGACAGATGGGAGGGGTGTGCCAGCAGCACCCTTTAGGTATCACCTCTACAGAACCTG
AGAGCCAGCGAGGGGTGGGGCCATCCACCCCCTCCCCGCATCGTTTAGTTCTGTAAATAATGTG
CACTGATTAAATGTACAGCCGGCGAGTGTGGCCGAGTTTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099638	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87288	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001099638 ⟸ NM_001106168
- Peptide Label:	precursor
- UniProtKB:	D3ZCG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSDRSALGRPGCAGSCLSSRASLLLLLLVLLDCLGGGTASEDAEVYAAENWLRLYGYLPQPSR HMSTMRSAQILASALAEMQSFYGIPVTGVLDEETKTWMKRPRCGVPDQFGVRVKANLRRRRRRY TLTGKTWSNYHLTFSIQNYTEKLGWYNSMEAVRRAFQVWEQVTPLVFQEVPYDDIRLRRRAEAD IMVLFASGFHGDSSPFDGVGGFLAHAYFPGPGLGGDTHFDADEPWTFSSTDLHGISLFLVAVHE LGHALGLEHSSNPSAIMAPFYQWMDTDNFQLPEDDLRGIQQLYGSPDGKPQPTRPLPTVRPRRP GRPDHQPPRPPQPPHPGGKPERPPKPGPPPQPRATERPDQYGPNICDGNFDTVAVLRGEMFVFK GRWFWRVRHNRVLDNYPMPIGHFWRGLPGNISAAYERQDGHFVFFKGNRYWLFREANLEPGYPQ PLSSYGTDIPYDRIDTAIWWEPTGHTFFFQADRYWRFNEETQHGDPGYPKPISVWQGIPNSPKG AFLSNDAAYTYFYKGTKYWKFNNERLRMEPGHPKSILRDFMGCQEHVEPRSRWPDVARPPFNPN GGAEPETEDDSKEEDVGDKDEGSRVVVQMEEVVRTVNVVMVLVPLLLLLCILGLAFALVQMQRK GAPRMLLYCKRSLQEWV hide sequence

RefSeq Acc Id:

ENSRNOP00000017629 ⟸ ENSRNOT00000017629

Protein Domains

ZnMc

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZCG5-F1-model_v2	AlphaFold	D3ZCG5	1-657	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700929

Promoter ID:

EPDNEW_R11453

Type:

initiation region

Name:

Mmp15_1

Description:

matrix metallopeptidase 15

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	10,101,435 - 10,101,495	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308937	AgrOrtholog
BioCyc Gene	G2FUF-6531	BioCyc
Ensembl Genes	ENSRNOG00000012622	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000017629	ENTREZGENE
	ENSRNOP00000017629.5	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017629	ENTREZGENE
	ENSRNOT00000017629.7	UniProtKB/TrEMBL
Gene3D-CATH	2.110.10.10	UniProtKB/TrEMBL
	3.40.390.10	UniProtKB/TrEMBL
InterPro	DUF3377	UniProtKB/TrEMBL
	Hemopexin-like_dom_sf	UniProtKB/TrEMBL
	Hemopexin/matrixin	UniProtKB/TrEMBL
	Hemopexin/matrixin_CS	UniProtKB/TrEMBL
	Hemopexin/matrixin_repeat	UniProtKB/TrEMBL
	M10A_MMP	UniProtKB/TrEMBL
	MetalloPept_cat_dom	UniProtKB/TrEMBL
	MMP15	UniProtKB/TrEMBL
	Pept_M10_metallopeptidase	UniProtKB/TrEMBL
	Pept_M10A_matrixin	UniProtKB/TrEMBL
	Pept_M10A_Zn_BS	UniProtKB/TrEMBL
	Peptidase_Metallo	UniProtKB/TrEMBL
	Peptidoglycan-bd-like	UniProtKB/TrEMBL
	PGBD-like_sf	UniProtKB/TrEMBL
KEGG Report	rno:291848	UniProtKB/TrEMBL
NCBI Gene	291848	ENTREZGENE
PANTHER	PTHR10201:SF25	UniProtKB/TrEMBL
Pfam	DUF3377	UniProtKB/TrEMBL
	Hemopexin	UniProtKB/TrEMBL
	Peptidase_M10	UniProtKB/TrEMBL
	PG_binding_1	UniProtKB/TrEMBL
PhenoGen	Mmp15	PhenoGen
PIRSF	Peptidase_M10A_matrix	UniProtKB/TrEMBL
PRINTS	MATRIXIN	UniProtKB/TrEMBL
PROSITE	CYSTEINE_SWITCH	UniProtKB/TrEMBL
	HEMOPEXIN	UniProtKB/TrEMBL
	HEMOPEXIN_2	UniProtKB/TrEMBL
SMART	SM00120	UniProtKB/TrEMBL
	ZnMc	UniProtKB/TrEMBL
Superfamily-SCOP	Hemopexin	UniProtKB/TrEMBL
	PGBD_like	UniProtKB/TrEMBL
UniProt	D3ZCG5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Mmp15	matrix metallopeptidase 15	Mmp15_predicted	matrix metallopeptidase 15 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Mmp15_predicted	matrix metallopeptidase 15 (predicted)		matrix metalloproteinase 15 (predicted)	Name updated	1299863	APPROVED
2005-01-12	Mmp15_predicted	matrix metalloproteinase 15 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD