Faap20 (FA core complex associated protein 20)

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Gene: Faap20 (FA core complex associated protein 20) Rattus norvegicus

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Symbol:

Faap20

Name:

FA core complex associated protein 20

RGD ID:

1308923

Description:

Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and ubiquitin-modified protein reader activity. Predicted to be involved in interstrand cross-link repair and translesion synthesis. Predicted to be located in cell junction; chromosome; and nuclear body. Predicted to be part of Fanconi anaemia nuclear complex and chromatin. Orthologous to human FAAP20 (FA core complex associated protein 20); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

FANCA-associated protein of 20 kDa; Fanconi anemia core complex associated protein 20; Fanconi anemia core complex-associated protein 20; Fanconi anemia-associated protein of 20 kDa; hypothetical protein LOC362678; LOC362678; RGD1308923; uncharacterized protein LOC362678

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,083,328 - 171,097,599 (+)	NCBI		GRCr8
mRatBN7.2	5	165,808,370 - 165,815,291 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	165,808,657 - 165,815,333 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	168,514,441 - 168,521,112 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,335,858 - 170,342,525 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,298,388 - 170,305,051 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	172,648,171 - 172,655,576 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	172,648,950 - 172,655,576 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,107,051 - 176,114,290 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,049,605 - 172,057,673 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,060,298 - 172,068,168 (+)	NCBI
Celera	5	164,012,575 - 164,019,087 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

congenital myasthenic syndrome 8 (ISO)

dilated cardiomyopathy 1LL (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

Goldberg-Shprintzen syndrome (ISO)

idiopathic generalized epilepsy (ISO)

immunodeficiency 16 (ISO)

immunodeficiency 38 (ISO)

Joubert syndrome 25 (ISO)

Neurodevelopmental Disorders (ISO)

Peroxisome Biogenesis Disorder, Complementation Group 7 (ISO)

Shprintzen-Goldberg Craniosynostosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-diaminodiphenylmethane (EXP)

acetamide (EXP)

Aflatoxin B2 alpha (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

butan-1-ol (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

dibutyl phthalate (EXP)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

lipopolysaccharide (ISO)

metformin (ISO)

methapyrilene (ISO)

nitrogen dioxide (ISO)

ozone (ISO)

p-toluidine (EXP)

paracetamol (EXP)

permethrin (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (IBA,ISO,ISS)

interstrand cross-link repair (ISO,ISS)

translesion synthesis (ISO,ISS)

Cellular Component

cell junction (ISO)

chromatin (ISO)

chromosome (ISO,ISS)

Fanconi anaemia nuclear complex (IBA,ISO,ISS)

nuclear body (ISO)

nucleoplasm (ISO)

Molecular Function

K63-linked polyubiquitin modification-dependent protein binding (IBA,ISO,ISS)

metal ion binding (IEA)

polyubiquitin modification-dependent protein binding (ISO,ISS)

protein binding (ISO)

ubiquitin binding (IEA)

ubiquitin-modified protein reader activity (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22266823	PMID:22343915	PMID:22396592	PMID:22705371

Genomics

Comparative Map Data

Faap20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,083,328 - 171,097,599 (+)	NCBI		GRCr8
mRatBN7.2	5	165,808,370 - 165,815,291 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	165,808,657 - 165,815,333 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	168,514,441 - 168,521,112 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,335,858 - 170,342,525 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,298,388 - 170,305,051 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	172,648,171 - 172,655,576 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	172,648,950 - 172,655,576 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,107,051 - 176,114,290 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,049,605 - 172,057,673 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,060,298 - 172,068,168 (+)	NCBI
Celera	5	164,012,575 - 164,019,087 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

FAAP20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	2,184,477 - 2,212,720 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	2,184,461 - 2,212,720 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	2,115,916 - 2,144,159 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	2,110,847 - 2,116,074 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	453,322 - 477,308 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	1,391,725 - 1,419,526 (-)	NCBI		HuRef
CHM1_1	1	2,100,821 - 2,131,279 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	1,619,452 - 1,648,129 (-)	NCBI		T2T-CHM13v2.0

Faap20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,333,168 - 155,341,144 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,334,259 - 155,341,144 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,246,904 - 155,256,687 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,249,802 - 155,256,687 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	154,624,075 - 154,630,796 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,093,796 - 154,100,483 (+)	NCBI		MGSCv36	mm8
Celera	4	157,523,985 - 157,530,697 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	86.17	NCBI

Faap20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955486	8,938,352 - 8,944,631 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAAP20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,057,166 - 226,080,895 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	224,727,133 - 224,742,708 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	900,616 - 922,845 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	2,050,834 - 2,060,251 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

FAAP20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	57,114,784 - 57,122,854 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	57,191,775 - 57,197,502 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	57,318,030 - 57,323,781 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	57,317,845 - 57,323,865 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	57,308,755 - 57,314,485 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	57,201,273 - 57,206,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	57,591,183 - 57,596,926 (-)	NCBI		UU_Cfam_GSD_1.0

Faap20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	28,165,913 - 28,169,854 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936737	1,296,152 - 1,300,038 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAAP20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	64,160,760 - 64,169,663 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FAAP20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	129,357,043 - 129,373,409 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	129,357,089 - 129,362,518 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	33,708,813 - 33,720,611 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Faap20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624818	7,747,602 - 7,756,968 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Faap20
41 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	74
Count of miRNA genes:	56
Interacting mature miRNAs:	68
Transcripts:	ENSRNOT00000055361
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	154828214	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat

Markers in Region

RH133763

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	165,815,112 - 165,815,262 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	172,655,398 - 172,655,547	NCBI	Rnor6.0
Rnor_5.0	5	176,114,112 - 176,114,261	UniSTS	Rnor5.0
Celera	5	164,018,909 - 164,019,058	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055361 ⟹ ENSRNOP00000052229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	165,808,657 - 165,815,291 (+)	Ensembl
Rnor_6.0 Ensembl	5	172,648,950 - 172,655,576 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102719 ⟹ ENSRNOP00000078144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	165,808,941 - 165,815,285 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108872 ⟹ ENSRNOP00000088935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	165,809,065 - 165,815,333 (+)	Ensembl

RefSeq Acc Id:

NM_001108698 ⟹ NP_001102168

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,090,965 - 171,097,599 (+)	NCBI
mRatBN7.2	5	165,808,657 - 165,815,291 (+)	NCBI
Rnor_6.0	5	172,648,950 - 172,655,576 (+)	NCBI
Rnor_5.0	5	176,107,051 - 176,114,290 (+)	NCBI
RGSC_v3.4	5	172,049,605 - 172,057,673 (+)	RGD
Celera	5	164,012,575 - 164,019,087 (+)	RGD

Sequence:

show sequence

GTCGCGACTCTCCCTCAAGGCGGCAGCCTCGTGTTCCCAACGGTTGGGATCTCGGCGCCTTAGA
TTTCCAGCGCCACAAAAGGGAGCTGGCACTTGGCAGAGCGGAGAGCGGGGGCTCTGGAAGCCTC
CGGAGCGGGTCCCGGTCGGAGGGCGGGTCTGGCTGTAAGTCTCACTTCCGCCGGACGCTCTTAG
GAGAAGGATGGAGGAGGAGCGGAGGCTGCGGGGGAGGCTGAGCCGCCGCAGGCCGCCCGCAGGG
GGCGGGCCCCCTAACTGCCGCCCCTGGTTTCTCTCGGAGGAAAGTAAGAGTGAGCCGTGGGCTG
CTCTGCTGCGCAGCACCGTGGGCGGGAACACGGATTGGACCCCGAACAGTCAGCCATTACCACC
GCTGCCTGCTTTTCCCAGCCAGGAATCTCTGCCTGACCCAGAGTCCACTGTGCCTCCTGAGGTC
TTCACTGTAGGATCCAAGACTTTTTCCTGGACGCCTTTTCCGCCTGCCCTTCGTGGCTCTGGAA
GCTCCTGCCGCCTGTTACGTTGTCCTGAAGGCTCTCCGGGGTCACCTGCTCCATCCCTGAAAGG
ATGCCCTGCACTGGATTCCCGTCAAACTCCCAGCACCCAGGAGTGTGTGCAGAGTCAACTTGTG
TTGCTGAACTGCCCATTGTGCCAGAAGGCATTTGACCCGAAGCTGACCCAGCTAGATGTGGATA
GCCACCTTGCTCAGTGCTTGGCTGAAAGCACAGAAGACGTGGTGTGGTGACCTGCAGGCTGCCT
TGCTGTATCCTCTCCTTCAAGCCTATATGCTGACATTGGATGTGGCTGCTGAGAGGTCTCTGGG
ACACCTGAGGGCTGGCTCCTTCTGGTTTTGTTCCTGGGCACAGGACGTAGTGCTGGTCACTGAC
AGCAGGCAGCAGATCCCCTGCGGGCTCATTTTCATTGTCAGCCTAATTGCATTTGGAATCACCT
AGGAGACACATCTCAGGGTGGAGACACATCTCAGGGTGGGCCTGTGAAACTGTTTCTAGAGATT
AACTGGGAAAGGAAGAGCCACTTGAATGTGGGTGGCACCCGTGGCCTGGGGTCCCACTGATTGA
CTATGTGTGGCACCATGGCCTGGGGTCCCACTGACTGAAAAGGGAAAAAGGAGAAATTGAGCTG
TTTCCTGATTGGGGATGTGATGAGACACACTTCTCACCTATGCCCTCCCTGCCACAGGGACTGT
ACCTTCTTCAACTTGTGAGCCAGAATAAATCTTAAGTTGCTTTCCAGTATTT

hide sequence

RefSeq Acc Id:

XM_006239585 ⟹ XP_006239647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,083,328 - 171,097,593 (+)	NCBI
mRatBN7.2	5	165,808,370 - 165,815,288 (+)	NCBI
Rnor_6.0	5	172,648,171 - 172,655,573 (+)	NCBI
Rnor_5.0	5	176,107,051 - 176,114,290 (+)	NCBI

Sequence:

show sequence

GTTCTAGGAGATCCAAGATCTTTTCCCACCTCTGTGGGCAGCAGACACATACCGCACAGATATC
TGCTCTCGGATCCTTAGGAGATTAAACTTGCTGATCCTCTTCAAGCCTACAGAGATAGAAGACA
ACCTCGGTCCGGAATCCATCCCCGACCCTGGCCTGGACACAATTTCCAGGTTGTGGAACCTGGA
AGTACTCACAGTAGGGGTGATCTCACCTAAAGATGAGAGGCAAAGTTCTGACTGGAGGAAGAGC
CAGGAAAGGGGTTAGGGAGTCAGATGGTTGCAGGACAGGCTTTTGGACCGTCCCTGACCCCTGG
GGGCTTTGCAGTAGAATGCTATTAGCGAATCCCAATGCGTCTGTCAAAGTGCCTGGGCTTTTGC
TGCCACCAAGTGATGGGTTGCAGGATTGCAGGGCGGGTTATTGGCTAGGTAGGAAACCGGGGAT
TTTCTCTCTGAGCCTTCATCCCCTGGGCTTTGAGGTTTCATTGCCTCTCTCTTTGGTAGAAAAA
CCCAGTTCCTTCTATAAGAAGAAGAGGAAGATGATGGCAAAACTGGACTTGGGAATCTGGCCCT
GTCCATGGGGCCCTCCTGAGAAAGGCCAAAGAACTGGAAACTGAGGCAGGGCATTGTCTAGTAC
CACTGGGAGGTGCCATCAGCAGGGCAAGCCTGACAGTTCTCAGCACGTGTTGACAGATGGGAGC
CCAGGCTCCAGGGTCTGCACAGGGTCGGGTGGGTCCAATCTCGCACCCCTGCAAACTGGAGGTC
AGCTCCACGCTGTCGCGACTCTCCCTCAAGGCGGCAGCCTCGTGTTCCCAACGGTTGGGATCTC
GGCGCCTTAGATTTCCAGCGCCACAAAAGGGAGCTGGCACTTGGCAGAGCGGAGAGCGGGGGCT
CTGGAAGCCTCCGGAGCGGGTCCCGGTCGGAGGGCGGGTCTGGCTGCCCCCTAACTGCCGCCCC
TGGTTTCTCTCGGAGGAAAGTAAGAGTGAGCCGTGGGCTGCTCTGCTGCGCAGCACCGTGGGCG
GGAACACGGATTGGACCCCGAACAGTCAGCCATTACCACCGCTGCCTGCTTTTCCCAGCCAGGA
ATCTCTGCCTGACCCAGAGTCCACTGTGCCTCCTGAGGTCTTCACTGTAGGATCCAAGACTTTT
TCCTGGACGCCTTTTCCGCCTGCCCTTCGTGGCTCTGGAAGCTCCTGCCGCCTGTTACGTTGTC
CTGAAGGCTCTCCGGGGTCACCTGCTCCATCCCTGAAAGGATGCCCTGCACTGGATTCCCGTCA
AACTCCCAGCACCCAGGAGTGTGTGCAGAGTCAACTTGTGTTGCTGAACTGCCCATTGTGCCAG
AAGGCATTTGACCCGAAGCTGACCCAGCTAGATGTGGATAGCCACCTTGCTCAGTGCTTGGCTG
AAAGCACAGAAGACGTGGTGTGGTGACCTGCAGGCTGCCTTGCTGTATCCTCTCCTTCAAGCCT
ATATGCTGACATTGGATGTGGCTGCTGAGAGGTCTCTGGGACACCTGAGGGCTGGCTCCTTCTG
GTTTTGTTCCTGGGCACAGGACGTAGTGCTGGTCACTGACAGCAGGCAGCAGATCCCCTGCGGG
CTCATTTTCATTGTCAGCCTAATTGCATTTGGAATCACCTAGGAGACACATCTCAGGGTGGAGA
CACATCTCAGGGTGAGCCTGTGAAACTGTTTCTAGAGATTAACTGGGAAAGGAAGAGCCACTTG
AATGTGGGTGGCACCCGTGGCCTGGGGTCCCACTGATTGACTATGTGTGGCACCATGGCCTGGG
GTCCCACTGACTGAAAAGGGAAAAAGGAGAAATTGAGCTGTTTCCTGATTGGGGATGTGATGAG
ACACACTTCTCACCTATGCCCTCCCTGCTACAGGGACTGTACCTTCTTCAACTTGTGAGCCAGA
ATAAATCTTAAGTTGCTTTCCAGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102168	(Get FASTA)	NCBI Sequence Viewer
	XP_006239647	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4AAA5	(Get FASTA)	NCBI Sequence Viewer
	EDL81292	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052229.2
	ENSRNOP00000078144.1
	ENSRNOP00000088935.1
	ENSRNOP00055021008
	ENSRNOP00060005217
	ENSRNOP00065011783

RefSeq Acc Id:	NP_001102168 ⟸ NM_001108698
- UniProtKB:	D4AAA5 (UniProtKB/Swiss-Prot), A0A8I6GGQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEERRLRGRLSRRRPPAGGGPPNCRPWFLSEESKSEPWAALLRSTVGGNTDWTPNSQPLPPLP AFPSQESLPDPESTVPPEVFTVGSKTFSWTPFPPALRGSGSSCRLLRCPEGSPGSPAPSLKGCP ALDSRQTPSTQECVQSQLVLLNCPLCQKAFDPKLTQLDVDSHLAQCLAESTEDVVW hide sequence

RefSeq Acc Id:

XP_006239647 ⟸ XM_006239585

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAQAPGSAQGRVGPISHPCKLEVSSTLSRLSLKAAASCSQRLGSRRLRFPAPQKGAGTWQSGE
RGLWKPPERVPVGGRVWLPPNCRPWFLSEESKSEPWAALLRSTVGGNTDWTPNSQPLPPLPAFP
SQESLPDPESTVPPEVFTVGSKTFSWTPFPPALRGSGSSCRLLRCPEGSPGSPAPSLKGCPALD
SRQTPSTQECVQSQLVLLNCPLCQKAFDPKLTQLDVDSHLAQCLAESTEDVVW

hide sequence

Ensembl Acc Id:

ENSRNOP00000052229 ⟸ ENSRNOT00000055361

Ensembl Acc Id:

ENSRNOP00000088935 ⟸ ENSRNOT00000108872

Ensembl Acc Id:

ENSRNOP00000078144 ⟸ ENSRNOT00000102719

Protein Domains

UBZ2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAA5-F1-model_v2	AlphaFold	D4AAA5	1-184	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308923	AgrOrtholog
BioCyc Gene	G2FUF-38931	BioCyc
Ensembl Genes	ENSRNOG00000036876	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055015052	UniProtKB/Swiss-Prot
	ENSRNOG00060004143	UniProtKB/Swiss-Prot
	ENSRNOG00065009716	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000055361.4	UniProtKB/Swiss-Prot
	ENSRNOT00000102719.1	UniProtKB/TrEMBL
	ENSRNOT00000108872.1	UniProtKB/TrEMBL
	ENSRNOT00055025743	UniProtKB/Swiss-Prot
	ENSRNOT00060006923	UniProtKB/Swiss-Prot
	ENSRNOT00065015612	UniProtKB/Swiss-Prot
InterPro	FA_core_complex_assoc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FANCA_interact	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UBZ2_FAAP20	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report	rno:362678	UniProtKB/Swiss-Prot
NCBI Gene	362678	ENTREZGENE
PANTHER	FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 20	UniProtKB/Swiss-Prot
	FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 20	UniProtKB/Swiss-Prot
	FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 20	UniProtKB/TrEMBL
	FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 20	UniProtKB/TrEMBL
Pfam	FANCA_interact	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UBZ_FAAP20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Faap20	PhenoGen
PROSITE	ZF_UBZ2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000036876	RatGTEx
	ENSRNOG00055015052	RatGTEx
	ENSRNOG00060004143	RatGTEx
	ENSRNOG00065009716	RatGTEx
UniProt	A0A8I5Y753_RAT	UniProtKB/TrEMBL
	A0A8I6GGQ9	ENTREZGENE, UniProtKB/TrEMBL
	D4AAA5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-25	Faap20	FA core complex associated protein 20	Faap20	Fanconi anemia core complex associated protein 20	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-06-08	Faap20	Fanconi anemia core complex associated protein 20	RGD1308923	LOC362678	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1308923	LOC362678	RGD1308923_predicted	LOC362678 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1308923_predicted	LOC362678 (predicted)	LOC362678_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362678_predicted	LOC362678 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar