Fam110a (family with sequence similarity 110, member A) - Rat Genome Database

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Gene: Fam110a (family with sequence similarity 110, member A) Rattus norvegicus
Analyze
Symbol: Fam110a
Name: family with sequence similarity 110, member A
RGD ID: 1308904
Description: Predicted to be involved in mitotic spindle organization. Predicted to be located in several cellular components, including cell cortex; cytosol; and microtubule cytoskeleton. Orthologous to human FAM110A (family with sequence similarity 110 member A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC311535; LOC311535; RGD1308904; serine threonine rich protein; similar to RIKEN cDNA 5430432M24; uncharacterized protein LOC311535
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,934,815 - 160,945,405 (-)NCBIGRCr8
mRatBN7.23140,474,484 - 140,485,074 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,474,249 - 140,485,093 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,378,978 - 144,389,568 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,962,789 - 152,973,379 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,704,522 - 150,715,211 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,476,580 - 147,487,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,476,580 - 147,487,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,826,434 - 153,837,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,326,013 - 142,328,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,231,585 - 142,234,145 (-)NCBI
Celera3139,229,369 - 139,239,525 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Fam110a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,934,815 - 160,945,405 (-)NCBIGRCr8
mRatBN7.23140,474,484 - 140,485,074 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,474,249 - 140,485,093 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,378,978 - 144,389,568 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,962,789 - 152,973,379 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,704,522 - 150,715,211 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,476,580 - 147,487,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,476,580 - 147,487,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,826,434 - 153,837,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,326,013 - 142,328,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,231,585 - 142,234,145 (-)NCBI
Celera3139,229,369 - 139,239,525 (-)NCBICelera
Cytogenetic Map3q41NCBI
FAM110A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820833,715 - 846,277 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20833,715 - 857,463 (+)EnsemblGRCh38hg38GRCh38
GRCh3720814,358 - 826,920 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3620762,356 - 774,922 (+)NCBINCBI36Build 36hg18NCBI36
Build 3420764,710 - 774,922NCBI
Celera20910,641 - 923,209 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20766,717 - 779,273 (+)NCBIHuRef
CHM1_120814,415 - 826,973 (+)NCBICHM1_1
T2T-CHM13v2.020880,828 - 893,378 (+)NCBIT2T-CHM13v2.0
Fam110a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392151,811,318 - 151,822,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2151,811,318 - 151,822,139 (-)EnsemblGRCm39 Ensembl
GRCm382151,969,396 - 151,980,219 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2151,969,398 - 151,980,219 (-)EnsemblGRCm38mm10GRCm38
MGSCv372151,795,134 - 151,805,955 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362151,660,839 - 151,671,570 (-)NCBIMGSCv36mm8
Celera2157,785,102 - 157,795,923 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Fam110a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495559657,478 - 82,729 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495559672,369 - 82,314 (+)NCBIChiLan1.0ChiLan1.0
FAM110A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,742,498 - 2,074,079 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,794,542 - 2,070,907 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020901,992 - 1,194,243 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120784,262 - 789,163 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC102152990
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,162,146 - 20,198,057 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2419,814,975 - 19,885,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02420,852,872 - 20,923,644 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12420,128,883 - 20,198,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,234,606 - 20,304,648 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,665,431 - 20,735,717 (-)NCBIUU_Cfam_GSD_1.0
Fam110a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,181,996 - 169,321,866 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648517,741,017 - 17,753,118 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648517,740,963 - 17,753,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM110A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,425,617 - 34,437,721 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,425,618 - 34,437,729 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,050,573 - 39,062,536 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM110A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,679,012 - 55,692,782 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,679,588 - 55,680,475 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660788,264,775 - 8,278,550 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam110a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247412,066,973 - 2,078,152 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247412,066,973 - 2,078,143 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam110a
13 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:75
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000074295
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat

Markers in Region
RH134425  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,474,574 - 140,474,767 (+)MAPPERmRatBN7.2
Rnor_6.03147,476,671 - 147,476,863NCBIRnor6.0
Rnor_5.03153,826,526 - 153,826,718UniSTSRnor5.0
RGSC_v3.43142,325,771 - 142,325,963UniSTSRGSC3.4
Celera3139,229,460 - 139,229,652UniSTS
RH 3.4 Map31277.8UniSTS
Cytogenetic Map3q41UniSTS
RH140290  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,486,123 - 140,486,343 (+)MAPPERmRatBN7.2
Rnor_6.03147,488,220 - 147,488,439NCBIRnor6.0
Rnor_5.03153,838,075 - 153,838,294UniSTSRnor5.0
RGSC_v3.43142,337,320 - 142,337,539UniSTSRGSC3.4
Celera3139,240,575 - 139,240,794UniSTS
RH 3.4 Map31268.7UniSTS
Cytogenetic Map3q41UniSTS
BM385076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,474,557 - 140,474,710 (+)MAPPERmRatBN7.2
Rnor_6.03147,476,654 - 147,476,806NCBIRnor6.0
Rnor_5.03153,826,509 - 153,826,661UniSTSRnor5.0
RGSC_v3.43142,325,754 - 142,325,906UniSTSRGSC3.4
Celera3139,229,443 - 139,229,595UniSTS
RH 3.4 Map31276.8UniSTS
Cytogenetic Map3q41UniSTS
UniSTS:234557  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,474,892 - 140,475,102 (+)MAPPERmRatBN7.2
Rnor_6.03147,476,989 - 147,477,198NCBIRnor6.0
Rnor_5.03153,826,844 - 153,827,053UniSTSRnor5.0
RGSC_v3.43142,326,089 - 142,326,298UniSTSRGSC3.4
Celera3139,229,778 - 139,229,987UniSTS
Cytogenetic Map3q41UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 2 51 16 26 1
Low 3 37 55 39 19 39 7 10 23 19 15 10 7
Below cutoff 6 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC079251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU670818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB556608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB766675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB806736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV110036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV113127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY318143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF912497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000074295   ⟹   ENSRNOP00000066725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,474,484 - 140,477,376 (-)Ensembl
Rnor_6.0 Ensembl3147,476,580 - 147,479,472 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077580   ⟹   ENSRNOP00000072792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,474,476 - 140,485,093 (-)Ensembl
Rnor_6.0 Ensembl3147,476,580 - 147,487,170 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084722   ⟹   ENSRNOP00000070568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,474,484 - 140,478,977 (-)Ensembl
Rnor_6.0 Ensembl3147,476,580 - 147,481,073 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093860   ⟹   ENSRNOP00000087216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,474,249 - 140,480,625 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097502   ⟹   ENSRNOP00000083945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,474,484 - 140,478,569 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103026   ⟹   ENSRNOP00000085228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,474,485 - 140,480,625 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116601   ⟹   ENSRNOP00000083568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,474,484 - 140,478,569 (-)Ensembl
RefSeq Acc Id: NM_001014050   ⟹   NP_001014072
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,937,707 (-)NCBI
mRatBN7.23140,474,484 - 140,477,376 (-)NCBI
Rnor_6.03147,476,580 - 147,479,472 (-)NCBI
Rnor_5.03153,826,434 - 153,837,025 (-)NCBI
RGSC_v3.43142,326,013 - 142,328,572 (-)RGD
Celera3139,229,369 - 139,232,261 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001244768   ⟹   NP_001231697
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,945,405 (-)NCBI
mRatBN7.23140,474,484 - 140,485,074 (-)NCBI
Rnor_6.03147,476,580 - 147,487,170 (-)NCBI
Rnor_5.03153,826,434 - 153,837,025 (-)NCBI
Celera3139,229,369 - 139,239,525 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001244769   ⟹   NP_001231698
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,939,308 (-)NCBI
mRatBN7.23140,474,484 - 140,478,977 (-)NCBI
Rnor_6.03147,476,580 - 147,481,073 (-)NCBI
Rnor_5.03153,826,434 - 153,837,025 (-)NCBI
Celera3139,229,369 - 139,233,862 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001244770   ⟹   NP_001231699
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,937,907 (-)NCBI
mRatBN7.23140,474,484 - 140,477,576 (-)NCBI
Rnor_6.03147,476,580 - 147,479,672 (-)NCBI
Rnor_5.03153,826,434 - 153,837,025 (-)NCBI
Celera3139,229,369 - 139,232,461 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235231   ⟹   XP_006235293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,939,900 (-)NCBI
mRatBN7.23140,474,484 - 140,479,575 (-)NCBI
Rnor_6.03147,476,580 - 147,481,665 (-)NCBI
Rnor_5.03153,826,434 - 153,837,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235234   ⟹   XP_006235296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,938,844 (-)NCBI
mRatBN7.23140,474,484 - 140,478,516 (-)NCBI
Rnor_6.03147,476,580 - 147,480,620 (-)NCBI
Rnor_5.03153,826,434 - 153,837,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591774   ⟹   XP_017447263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,938,855 (-)NCBI
mRatBN7.23140,474,484 - 140,478,525 (-)NCBI
Rnor_6.03147,476,580 - 147,480,620 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105051   ⟹   XP_038960979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,934,815 - 160,938,845 (-)NCBI
mRatBN7.23140,474,484 - 140,478,515 (-)NCBI
RefSeq Acc Id: NP_001014072   ⟸   NM_001014050
- Peptide Label: isoform 2
- UniProtKB: M0RB04 (UniProtKB/TrEMBL),   Q6AXZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231697   ⟸   NM_001244768
- Peptide Label: isoform 1
- UniProtKB: G4XVC3 (UniProtKB/TrEMBL),   A0A0G2JY94 (UniProtKB/TrEMBL),   Q6AXZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231698   ⟸   NM_001244769
- Peptide Label: isoform 1
- UniProtKB: G4XVC3 (UniProtKB/TrEMBL),   A0A0G2JY94 (UniProtKB/TrEMBL),   Q6AXZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231699   ⟸   NM_001244770
- Peptide Label: isoform 1
- UniProtKB: G4XVC3 (UniProtKB/TrEMBL),   A0A0G2JY94 (UniProtKB/TrEMBL),   Q6AXZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235293   ⟸   XM_006235231
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235296   ⟸   XM_006235234
- Peptide Label: isoform X2
- UniProtKB: G4XVC3 (UniProtKB/TrEMBL),   A0A0G2JY94 (UniProtKB/TrEMBL),   Q6AXZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447263   ⟸   XM_017591774
- Peptide Label: isoform X2
- UniProtKB: G4XVC3 (UniProtKB/TrEMBL),   A0A0G2JY94 (UniProtKB/TrEMBL),   Q6AXZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070568   ⟸   ENSRNOT00000084722
RefSeq Acc Id: ENSRNOP00000072792   ⟸   ENSRNOT00000077580
RefSeq Acc Id: ENSRNOP00000066725   ⟸   ENSRNOT00000074295
RefSeq Acc Id: XP_038960979   ⟸   XM_039105051
- Peptide Label: isoform X2
- UniProtKB: G4XVC3 (UniProtKB/TrEMBL),   A0A0G2JY94 (UniProtKB/TrEMBL),   Q6AXZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000083945   ⟸   ENSRNOT00000097502
RefSeq Acc Id: ENSRNOP00000083568   ⟸   ENSRNOT00000116601
RefSeq Acc Id: ENSRNOP00000087216   ⟸   ENSRNOT00000093860
RefSeq Acc Id: ENSRNOP00000085228   ⟸   ENSRNOT00000103026
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RB04-F1-model_v2 AlphaFold M0RB04 1-326 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692529
Promoter ID:EPDNEW_R3053
Type:single initiation site
Name:Fam110a_1
Description:family with sequence similarity 110, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03147,487,158 - 147,487,218EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308904 AgrOrtholog
BioCyc Gene G2FUF-47291 BioCyc
Ensembl Genes ENSRNOG00000050946 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074295 ENTREZGENE
  ENSRNOT00000074295.3 UniProtKB/TrEMBL
  ENSRNOT00000077580 ENTREZGENE
  ENSRNOT00000077580.2 UniProtKB/TrEMBL
  ENSRNOT00000084722 ENTREZGENE
  ENSRNOT00000084722.2 UniProtKB/TrEMBL
  ENSRNOT00000093860 ENTREZGENE
  ENSRNOT00000093860.1 UniProtKB/TrEMBL
  ENSRNOT00000097502.1 UniProtKB/TrEMBL
  ENSRNOT00000103026.1 UniProtKB/TrEMBL
  ENSRNOT00000116601.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133086 IMAGE-MGC_LOAD
InterPro FAM110 UniProtKB/TrEMBL
  FAM110_C UniProtKB/TrEMBL
  FAM110_N UniProtKB/TrEMBL
KEGG Report rno:311535 UniProtKB/TrEMBL
MGC_CLONE MGC:94345 IMAGE-MGC_LOAD
NCBI Gene 311535 ENTREZGENE
PANTHER PROTEIN FAM110A UniProtKB/TrEMBL
  PTHR14758 UniProtKB/TrEMBL
Pfam FAM110_C UniProtKB/TrEMBL
  FAM110_N UniProtKB/TrEMBL
PhenoGen Fam110a PhenoGen
RatGTEx ENSRNOG00000050946 RatGTEx
UniProt A0A0G2JY94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2V0 ENTREZGENE, UniProtKB/TrEMBL
  G4XVC3 ENTREZGENE, UniProtKB/TrEMBL
  M0RB04 ENTREZGENE, UniProtKB/TrEMBL
  Q6AXZ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Fam110a  family with sequence similarity 110, member A  RGD1308904  similar to RIKEN cDNA 5430432M24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308904  similar to RIKEN cDNA 5430432M24  RGD1308904_predicted  similar to RIKEN cDNA 5430432M24 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308904_predicted  similar to RIKEN cDNA 5430432M24 (predicted)  LOC311535_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311535_predicted  similar to RIKEN cDNA 5430432M24 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL