Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Experimental Liver Cirrhosis | | ISO | APMAP (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25380136 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Experimental Liver Cirrhosis | | ISO | APMAP (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25380136 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Apmap (Rattus norvegicus - Norway rat) |
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APMAP (Homo sapiens - human) |
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Apmap (Mus musculus - house mouse) |
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Apmap (Chinchilla lanigera - long-tailed chinchilla) |
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APMAP (Pan paniscus - bonobo/pygmy chimpanzee) |
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APMAP (Canis lupus familiaris - dog) |
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Apmap (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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APMAP (Sus scrofa - pig) |
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LOC103247048 (Chlorocebus sabaeus - green monkey) |
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Apmap (Heterocephalus glaber - naked mole-rat) |
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Variants in Apmap
153 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 33 | 57 | 41 | 19 | 41 | 2 | 4 | 74 | 35 | 39 | 11 | 2 |
Low | 10 | 6 | 7 | 2 | 6 | ||||||||
Below cutoff |
RefSeq Transcripts | NM_001034003 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001398965 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001398966 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006235217 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008762362 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591952 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039105605 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284288 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284289 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284290 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AY325201 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC090021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC105824 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000003 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000008931 ⟹ ENSRNOP00000008932 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000040188 ⟹ ENSRNOP00000043524 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000091310 ⟹ ENSRNOP00000073800 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000099680 ⟹ ENSRNOP00000082165 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001034003 ⟹ NP_001029175 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001398965 ⟹ NP_001385894 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001398966 ⟹ NP_001385895 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_006235217 ⟹ XP_006235279 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063284288 ⟹ XP_063140358 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063284289 ⟹ XP_063140359 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063284290 ⟹ XP_063140360 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001029175 | (Get FASTA) | NCBI Sequence Viewer |
NP_001385894 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001385895 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006235279 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140358 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140359 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140360 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH90021 | (Get FASTA) | NCBI Sequence Viewer |
AAI05825 | (Get FASTA) | NCBI Sequence Viewer | |
AAP92602 | (Get FASTA) | NCBI Sequence Viewer | |
EDL86152 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000008932 | ||
ENSRNOP00000008932.7 | |||
ENSRNOP00000043524.5 | |||
ENSRNOP00000073800.2 | |||
ENSRNOP00000082165 | |||
ENSRNOP00000082165.1 | |||
GenBank Protein | Q7TP48 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001029175 ⟸ NM_001034003 |
- Peptide Label: | isoform 3 |
- UniProtKB: | Q3KR93 (UniProtKB/Swiss-Prot), Q7TP48 (UniProtKB/Swiss-Prot), A0A8L2Q3J0 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006235279 ⟸ XM_006235217 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8L2Q3J0 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000008932 ⟸ ENSRNOT00000008931 |
RefSeq Acc Id: | ENSRNOP00000073800 ⟸ ENSRNOT00000091310 |
RefSeq Acc Id: | ENSRNOP00000043524 ⟸ ENSRNOT00000040188 |
RefSeq Acc Id: | ENSRNOP00000082165 ⟸ ENSRNOT00000099680 |
RefSeq Acc Id: | NP_001385895 ⟸ NM_001398966 |
- Peptide Label: | isoform 2 |
RefSeq Acc Id: | NP_001385894 ⟸ NM_001398965 |
- Peptide Label: | isoform 1 |
- UniProtKB: | A6KHF4 (UniProtKB/TrEMBL), A0A8L2Q3J0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063140359 ⟸ XM_063284289 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063140358 ⟸ XM_063284288 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063140360 ⟸ XM_063284290 |
- Peptide Label: | isoform X3 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q7TP48-F1-model_v2 | AlphaFold | Q7TP48 | 1-376 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13692514 | ||||||||
Promoter ID: | EPDNEW_R3039 | ||||||||
Type: | initiation region | ||||||||
Name: | Apmap_1 | ||||||||
Description: | adipocyte plasma membrane associated protein | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R3040 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 13692526 | ||||||||
Promoter ID: | EPDNEW_R3040 | ||||||||
Type: | initiation region | ||||||||
Name: | Apmap_2 | ||||||||
Description: | adipocyte plasma membrane associated protein | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R3039 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1308874 | AgrOrtholog |
BioCyc Gene | G2FUF-47350 | BioCyc |
Ensembl Genes | ENSRNOG00000006795 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000008931 | ENTREZGENE |
ENSRNOT00000008931.9 | UniProtKB/TrEMBL | |
ENSRNOT00000040188.5 | UniProtKB/TrEMBL | |
ENSRNOT00000091310.2 | UniProtKB/TrEMBL | |
ENSRNOT00000099680 | ENTREZGENE | |
ENSRNOT00000099680.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.120.10.30 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7325717 | IMAGE-MGC_LOAD |
IMAGE:7372968 | IMAGE-MGC_LOAD | |
InterPro | 6-blade_b-propeller_TolB-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Strictosidine_synth_cons-reg | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:366227 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:109557 | IMAGE-MGC_LOAD |
MGC:125177 | IMAGE-MGC_LOAD | |
NCBI Gene | 366227 | ENTREZGENE |
PANTHER | ADIPOCYTE PLASMA MEMBRANE-ASSOCIATED PROTEIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
STRICTOSIDINE SYNTHASE-RELATED | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | SSL_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Str_synth | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Apmap | PhenoGen |
RatGTEx | ENSRNOG00000006795 | RatGTEx |
Superfamily-SCOP | Calcium-dependent phosphotriesterase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0G2K6G2_RAT | UniProtKB/TrEMBL |
A0A8I5ZUF8_RAT | UniProtKB/TrEMBL | |
A0A8L2Q3J0 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KHF4 | ENTREZGENE, UniProtKB/TrEMBL | |
APMAP_RAT | UniProtKB/Swiss-Prot | |
D3ZGQ3_RAT | UniProtKB/TrEMBL | |
Q3KR93 | ENTREZGENE | |
Q7TP48 | ENTREZGENE | |
UniProt Secondary | Q3KR93 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2012-10-10 | Apmap | adipocyte plasma membrane associated protein | RGD1308874 | similar to RIKEN cDNA 2310001A20 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | RGD1308874 | similar to RIKEN cDNA 2310001A20 | RGD1308874_predicted | similar to RIKEN cDNA 2310001A20 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-20 | RGD1308874_predicted | similar to RIKEN cDNA 2310001A20 (predicted) | LOC366227_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC366227_predicted | similar to RIKEN cDNA 2310001A20 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |