Gcdh (glutaryl-CoA dehydrogenase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gcdh (glutaryl-CoA dehydrogenase) Rattus norvegicus
Analyze
Symbol: Gcdh
Name: glutaryl-CoA dehydrogenase
RGD ID: 1308829
Description: Enables fatty-acyl-CoA binding activity; flavin adenine dinucleotide binding activity; and glutaryl-CoA dehydrogenase activity. Involved in fatty acid oxidation and fatty-acyl-CoA biosynthetic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in glutaric acidemia I. Orthologous to human GCDH (glutaryl-CoA dehydrogenase); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; carnitine palmitoyltransferase I deficiency pathway; ethylmalonic encephalopathy pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glutaryl-CoA dehydrogenase, mitochondrial; glutaryl-Coenzyme A dehydrogenase; LOC364975
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Gcdhem1Dba  
Genetic Models: SD-Gcdhem1Dba
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,168,038 - 40,174,536 (+)NCBIGRCr8
mRatBN7.21923,263,215 - 23,269,689 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,263,264 - 23,269,681 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,086,109 - 30,092,571 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,740,469 - 30,746,931 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,963,158 - 32,969,621 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,000,497 - 26,006,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,000,497 - 26,006,970 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,976,120 - 36,982,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,919,470 - 24,925,943 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11924,924,493 - 24,930,910 (+)NCBI
Celera1922,820,112 - 22,826,585 (+)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Elevated glutaric acid levels in Dhtkd1-/Gcdh- double knockout mice challenge our current understanding of lysine metabolism. Biagosch C, etal., Biochim Biophys Acta. 2017 Sep;1863(9):2220-2228. doi: 10.1016/j.bbadis.2017.05.018. Epub 2017 May 22.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Organic aciduria in the riboflavin-deficient rat. Goodman SI Am J Clin Nutr. 1981 Nov;34(11):2434-7.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
10. Enzymes of fatty acid beta-oxidation in developing brain. Reichmann H, etal., J Neurochem. 1988 Aug;51(2):339-44.
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12865426   PMID:14651853   PMID:18614015   PMID:18775954   PMID:23658800   PMID:25416781   PMID:25931508   PMID:27984186   PMID:31505169   PMID:33965309  


Genomics

Comparative Map Data
Gcdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,168,038 - 40,174,536 (+)NCBIGRCr8
mRatBN7.21923,263,215 - 23,269,689 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,263,264 - 23,269,681 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,086,109 - 30,092,571 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,740,469 - 30,746,931 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,963,158 - 32,969,621 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,000,497 - 26,006,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,000,497 - 26,006,970 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,976,120 - 36,982,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,919,470 - 24,925,943 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11924,924,493 - 24,930,910 (+)NCBI
Celera1922,820,112 - 22,826,585 (+)NCBICelera
Cytogenetic Map19q11NCBI
GCDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,891,129 - 12,899,999 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,891,160 - 12,914,207 (+)EnsemblGRCh38hg38GRCh38
GRCh371913,001,943 - 13,010,813 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,862,974 - 12,871,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 341912,862,973 - 12,871,782NCBI
Celera1912,891,682 - 12,900,491 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,573,809 - 12,582,680 (+)NCBIHuRef
CHM1_11913,002,442 - 13,011,310 (+)NCBICHM1_1
T2T-CHM13v2.01913,015,581 - 13,024,452 (+)NCBIT2T-CHM13v2.0
Gcdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,613,016 - 85,629,378 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,613,022 - 85,620,550 (-)EnsemblGRCm39 Ensembl
GRCm38884,886,387 - 84,893,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,886,393 - 84,893,921 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,410,286 - 87,417,820 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,776,696 - 87,783,807 (-)NCBIMGSCv36mm8
Celera889,185,944 - 89,193,269 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.28NCBI
Gcdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,952,580 - 31,961,615 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,952,400 - 31,958,067 (+)NCBIChiLan1.0ChiLan1.0
GCDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,819,800 - 17,828,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,820,417 - 16,829,367 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,452,779 - 12,461,757 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,195,241 - 13,204,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,195,241 - 13,204,223 (+)Ensemblpanpan1.1panPan2
GCDH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,284,341 - 49,290,456 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,284,425 - 49,290,849 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,156,598 - 49,162,728 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,801,277 - 49,807,408 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,800,586 - 49,807,454 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,012,394 - 49,018,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,438,870 - 49,444,995 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,681,416 - 49,687,548 (-)NCBIUU_Cfam_GSD_1.0
Gcdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,392,780 - 208,399,126 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,955,559 - 1,962,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,955,601 - 1,961,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,130,625 - 66,138,868 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,131,154 - 66,138,963 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,461,407 - 66,466,086 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GCDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,572,512 - 11,588,108 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,572,540 - 11,588,224 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,202,199 - 8,216,104 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901475,073 - 479,292 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901474,836 - 479,674 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gcdh
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:52
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000004570
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat

Markers in Region
RH137276  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,269,426 - 23,269,632 (-)MAPPERmRatBN7.2
Rnor_6.01926,000,554 - 26,000,759NCBIRnor6.0
Rnor_5.01936,976,177 - 36,976,382UniSTSRnor5.0
RGSC_v3.41924,925,681 - 24,925,886UniSTSRGSC3.4
Celera1922,826,323 - 22,826,528UniSTS
Cytogenetic Map19q11UniSTS
RH143238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,263,273 - 23,263,409 (-)MAPPERmRatBN7.2
Rnor_6.01926,006,776 - 26,006,911NCBIRnor6.0
Rnor_5.01936,982,399 - 36,982,534UniSTSRnor5.0
RGSC_v3.41924,919,529 - 24,919,664UniSTSRGSC3.4
Celera1922,820,171 - 22,820,306UniSTS
Cytogenetic Map19q11UniSTS


Genetic Models
This gene Gcdh is modified in the following models/strains:


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 34 11 8
Low 7
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000004570   ⟹   ENSRNOP00000004570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1923,263,317 - 23,269,674 (+)Ensembl
Rnor_6.0 Ensembl1926,000,497 - 26,006,970 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103013   ⟹   ENSRNOP00000079491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1923,263,281 - 23,269,678 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116825   ⟹   ENSRNOP00000082785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1923,263,264 - 23,269,681 (+)Ensembl
RefSeq Acc Id: NM_001108896   ⟹   NP_001102366
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,168,063 - 40,174,536 (+)NCBI
mRatBN7.21923,263,215 - 23,269,689 (+)NCBI
Rnor_6.01926,000,497 - 26,006,970 (-)NCBI
Rnor_5.01936,976,120 - 36,982,606 (-)NCBI
RGSC_v3.41924,919,470 - 24,925,943 (+)RGD
Celera1922,820,112 - 22,826,585 (+)RGD
Sequence:
RefSeq Acc Id: XM_063278170   ⟹   XP_063134240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,168,038 - 40,174,528 (+)NCBI
RefSeq Acc Id: XM_063278171   ⟹   XP_063134241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,168,038 - 40,174,528 (+)NCBI
RefSeq Acc Id: XM_063278172   ⟹   XP_063134242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,168,039 - 40,174,528 (+)NCBI
RefSeq Acc Id: XM_063278173   ⟹   XP_063134243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,168,039 - 40,174,007 (+)NCBI
RefSeq Acc Id: NP_001102366   ⟸   NM_001108896
- UniProtKB: A6IY64 (UniProtKB/TrEMBL),   A0A8I5ZN89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000004570   ⟸   ENSRNOT00000004570
RefSeq Acc Id: ENSRNOP00000082785   ⟸   ENSRNOT00000116825
RefSeq Acc Id: ENSRNOP00000079491   ⟸   ENSRNOT00000103013
RefSeq Acc Id: XP_063134240   ⟸   XM_063278170
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063134241   ⟸   XM_063278171
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063134242   ⟸   XM_063278172
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063134243   ⟸   XM_063278173
- Peptide Label: isoform X4
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZT90-F1-model_v2 AlphaFold D3ZT90 1-447 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701027
Promoter ID:EPDNEW_R11551
Type:multiple initiation site
Name:Gcdh_1
Description:glutaryl-CoA dehydrogenase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01926,006,867 - 26,006,927EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308829 AgrOrtholog
BioCyc Gene G2FUF-6126 BioCyc
BioCyc Pathway PWY-5177 [glutaryl-CoA degradation] BioCyc
BioCyc Pathway Image PWY-5177 BioCyc
Ensembl Genes ENSRNOG00000003307 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004570 ENTREZGENE
  ENSRNOT00000004570.6 UniProtKB/TrEMBL
  ENSRNOT00000103013.1 UniProtKB/TrEMBL
  ENSRNOT00000116825.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro Acyl-CoA_DH_CS UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCo_DH_C-like UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase UniProtKB/TrEMBL
KEGG Report rno:364975 UniProtKB/TrEMBL
NCBI Gene 364975 ENTREZGENE
PANTHER GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL UniProtKB/TrEMBL
  GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
PhenoGen Gcdh PhenoGen
PROSITE ACYL_COA_DH_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003307 RatGTEx
Superfamily-SCOP AcylCoA_dehyd_NM UniProtKB/TrEMBL
  AcylCoADH_C_like UniProtKB/TrEMBL
UniProt A0A8I5ZN89 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUK9_RAT UniProtKB/TrEMBL
  A6IY64 ENTREZGENE, UniProtKB/TrEMBL
  D3ZT90_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Gcdh  glutaryl-CoA dehydrogenase  Gcdh  glutaryl-Coenzyme A dehydrogenase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Gcdh  glutaryl-Coenzyme A dehydrogenase   Gcdh_predicted  glutaryl-Coenzyme A dehydrogenase (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gcdh_predicted  glutaryl-Coenzyme A dehydrogenase (predicted)      Symbol and Name status set to approved 70820 APPROVED