Ktn1 (kinectin 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ktn1 (kinectin 1) Rattus norvegicus
Analyze
Symbol: Ktn1
Name: kinectin 1
RGD ID: 1308719
Description: Predicted to enable kinesin binding activity. Predicted to be involved in microtubule-based movement and protein transport. Predicted to be located in endoplasmic reticulum and exocytic vesicle. Orthologous to human KTN1 (kinectin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinectin; kinectin 1 (kinesin receptor); LOC361029
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21520,913,665 - 21,002,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,914,642 - 21,002,578 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01524,465,761 - 24,552,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,479,761 - 24,553,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,400,126 - 28,489,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41523,633,479 - 23,722,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11523,662,379 - 23,701,610 (+)NCBI
Celera1521,306,945 - 21,390,146 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11486041   PMID:18504258   PMID:19946888   PMID:22658674   PMID:25468996   PMID:33450132  


Genomics

Comparative Map Data
Ktn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21520,913,665 - 21,002,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,914,642 - 21,002,578 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01524,465,761 - 24,552,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,479,761 - 24,553,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,400,126 - 28,489,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41523,633,479 - 23,722,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11523,662,379 - 23,701,610 (+)NCBI
Celera1521,306,945 - 21,390,146 (+)NCBICelera
Cytogenetic Map15p14NCBI
KTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381455,580,207 - 55,684,584 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1455,559,072 - 55,701,526 (+)EnsemblGRCh38hg38GRCh38
GRCh371456,046,925 - 56,151,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361455,116,678 - 55,221,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 341455,116,792 - 55,221,047NCBI
Celera1436,096,260 - 36,200,637 (+)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1436,231,668 - 36,314,068 (+)NCBIHuRef
CHM1_11455,985,265 - 56,089,654 (+)NCBICHM1_1
T2T-CHM13v2.01449,785,926 - 49,890,300 (+)NCBIT2T-CHM13v2.0
Ktn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391447,886,551 - 47,974,021 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1447,885,905 - 47,977,351 (+)EnsemblGRCm39 Ensembl
GRCm381447,648,274 - 47,736,564 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1447,648,448 - 47,739,894 (+)EnsemblGRCm38mm10GRCm38
MGSCv371448,283,431 - 48,356,239 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361446,585,656 - 46,658,434 (+)NCBIMGSCv36mm8
Celera1443,864,096 - 43,936,861 (+)NCBICelera
Cytogenetic Map14C1NCBI
Ktn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546613,664,763 - 13,747,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546613,664,312 - 13,747,368 (-)NCBIChiLan1.0ChiLan1.0
KTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11454,456,984 - 54,539,472 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1454,467,238 - 54,539,472 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01436,162,612 - 36,266,941 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1831,352,623 - 31,457,715 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl831,352,465 - 31,457,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha831,118,763 - 31,223,807 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0831,609,120 - 31,717,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl831,608,868 - 31,717,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1831,213,759 - 31,318,168 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0831,291,255 - 31,395,935 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0831,656,354 - 31,761,647 (+)NCBIUU_Cfam_GSD_1.0
Ktn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864073,743,757 - 73,817,618 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936495374,051 - 442,142 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1184,881,550 - 185,152,975 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11184,881,555 - 184,990,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21205,433,058 - 205,541,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12432,769,740 - 32,871,650 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2432,797,736 - 32,872,219 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ktn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624884409,339 - 483,562 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624884365,312 - 484,007 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH25245  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21521,002,233 - 21,002,365 (+)MAPPERmRatBN7.2
mRatBN7.2Y6,045,894 - 6,046,026 (+)MAPPERmRatBN7.2
Rnor_6.01524,552,489 - 24,552,620NCBIRnor6.0
Rnor_5.01528,488,785 - 28,488,916UniSTSRnor5.0
RGSC_v3.41523,721,949 - 23,722,080UniSTSRGSC3.4
Celera1521,389,802 - 21,389,933UniSTS
Cytogenetic Map15p14UniSTS
RH143447  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21520,927,811 - 20,928,098 (+)MAPPERmRatBN7.2
Rnor_6.01524,479,756 - 24,480,042NCBIRnor6.0
Rnor_5.01528,414,198 - 28,414,484UniSTSRnor5.0
RGSC_v3.41523,646,648 - 23,646,934UniSTSRGSC3.4
Celera1521,321,332 - 21,321,618UniSTS
RH 3.4 Map15197.3UniSTS
Cytogenetic Map15p14UniSTS
AI136647  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21521,002,288 - 21,002,507 (+)MAPPERmRatBN7.2
mRatBN7.2731,842,772 - 31,842,991 (+)MAPPERmRatBN7.2
Rnor_6.0738,321,211 - 38,321,429NCBIRnor6.0
Rnor_6.01524,552,544 - 24,552,762NCBIRnor6.0
Rnor_5.01528,488,840 - 28,489,058UniSTSRnor5.0
Rnor_5.0738,363,734 - 38,363,952UniSTSRnor5.0
RGSC_v3.4734,543,984 - 34,544,202UniSTSRGSC3.4
RGSC_v3.41523,722,004 - 23,722,222UniSTSRGSC3.4
Celera1521,389,857 - 21,390,075UniSTS
Celera728,887,241 - 28,887,459UniSTS
RH 3.4 Map15186.28UniSTS
Cytogenetic Map15p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:367
Count of miRNA genes:113
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000016449, ENSRNOT00000037846, ENSRNOT00000037854, ENSRNOT00000060726, ENSRNOT00000060727
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 39 11 8
Low 1 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006221906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000016449   ⟹   ENSRNOP00000016449
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,914,655 - 21,002,578 (+)Ensembl
Rnor_6.0 Ensembl1524,479,761 - 24,553,197 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097063   ⟹   ENSRNOP00000092286
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,914,642 - 21,002,345 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099783   ⟹   ENSRNOP00000089965
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,914,642 - 21,002,345 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106317   ⟹   ENSRNOP00000086218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,914,642 - 21,002,345 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107795   ⟹   ENSRNOP00000094260
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,927,824 - 21,002,392 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119719   ⟹   ENSRNOP00000092335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,914,655 - 21,002,578 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120057   ⟹   ENSRNOP00000077642
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,914,655 - 21,002,578 (+)Ensembl
RefSeq Acc Id: XM_006251816   ⟹   XP_006251878
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,227 - 21,002,578 (+)NCBI
Rnor_6.01524,466,423 - 24,552,833 (+)NCBI
Rnor_5.01528,400,126 - 28,489,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251819   ⟹   XP_006251881
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,225 - 21,002,578 (+)NCBI
Rnor_6.01524,466,422 - 24,552,833 (+)NCBI
Rnor_5.01528,400,126 - 28,489,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251822   ⟹   XP_006251884
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,230 - 21,002,578 (+)NCBI
Rnor_6.01524,466,425 - 24,552,833 (+)NCBI
Rnor_5.01528,400,126 - 28,489,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251824   ⟹   XP_006251886
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,225 - 21,002,153 (+)NCBI
Rnor_6.01524,466,424 - 24,552,833 (+)NCBI
Rnor_5.01528,400,126 - 28,489,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251825   ⟹   XP_006251887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,220 - 21,002,578 (+)NCBI
Rnor_6.01524,466,423 - 24,552,833 (+)NCBI
Rnor_5.01528,400,126 - 28,489,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251826   ⟹   XP_006251888
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,231 - 21,002,578 (+)NCBI
Rnor_6.01524,466,427 - 24,552,833 (+)NCBI
Rnor_5.01528,400,126 - 28,489,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770614   ⟹   XP_008768836
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,216 - 21,002,153 (+)NCBI
Rnor_6.01524,466,423 - 24,552,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599845   ⟹   XP_017455334
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,217 - 21,002,578 (+)NCBI
Rnor_6.01524,466,421 - 24,552,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599846   ⟹   XP_017455335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,216 - 21,002,578 (+)NCBI
Rnor_6.01524,466,420 - 24,552,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599848   ⟹   XP_017455337
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,221 - 21,002,578 (+)NCBI
Rnor_6.01524,466,422 - 24,552,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599849   ⟹   XP_017455338
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,219 - 21,002,578 (+)NCBI
Rnor_6.01524,466,421 - 24,552,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599850   ⟹   XP_017455339
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,223 - 21,002,578 (+)NCBI
Rnor_6.01524,466,424 - 24,552,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093790   ⟹   XP_038949718
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,217 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093791   ⟹   XP_038949719
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,913,665 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093792   ⟹   XP_038949720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,766 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093793   ⟹   XP_038949721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,915,358 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093794   ⟹   XP_038949722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,215 - 21,002,588 (+)NCBI
RefSeq Acc Id: XM_039093795   ⟹   XP_038949723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,213 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093796   ⟹   XP_038949724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,216 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093797   ⟹   XP_038949725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,214 - 21,002,588 (+)NCBI
RefSeq Acc Id: XM_039093799   ⟹   XP_038949727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,212 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093800   ⟹   XP_038949728
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,221 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093801   ⟹   XP_038949729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,217 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093802   ⟹   XP_038949730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,217 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093803   ⟹   XP_038949731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,216 - 21,002,588 (+)NCBI
RefSeq Acc Id: XM_039093804   ⟹   XP_038949732
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,214 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093806   ⟹   XP_038949734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,228 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093807   ⟹   XP_038949735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,221 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093808   ⟹   XP_038949736
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,222 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093810   ⟹   XP_038949738
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,212 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093811   ⟹   XP_038949739
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,221 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093812   ⟹   XP_038949740
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,215 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093813   ⟹   XP_038949741
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,214 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093814   ⟹   XP_038949742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,226 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093815   ⟹   XP_038949743
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,229 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093816   ⟹   XP_038949744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,214 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093817   ⟹   XP_038949745
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,223 - 21,002,153 (+)NCBI
RefSeq Acc Id: XM_039093818   ⟹   XP_038949746
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,218 - 21,002,578 (+)NCBI
RefSeq Acc Id: XM_039093820   ⟹   XP_038949748
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,214 - 21,002,153 (+)NCBI
RefSeq Acc Id: XR_005493914
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,215 - 21,002,090 (+)NCBI
RefSeq Acc Id: XR_005493915
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,220 - 20,978,023 (+)NCBI
RefSeq Acc Id: XR_005493916
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,914,220 - 20,981,289 (+)NCBI
Protein Sequences
Protein RefSeqs XP_006251878 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251881 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251884 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251886 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251887 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251888 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768836 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455334 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455335 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455337 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455338 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949718 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949719 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949720 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949721 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949722 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949723 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949724 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949725 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949727 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949728 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949729 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949730 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949731 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949732 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949734 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949735 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949736 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949738 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949746 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949748 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_006251887   ⟸   XM_006251825
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006251886   ⟸   XM_006251824
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006251881   ⟸   XM_006251819
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006251878   ⟸   XM_006251816
- Peptide Label: isoform X3
- UniProtKB: D4A4Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251884   ⟸   XM_006251822
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006251888   ⟸   XM_006251826
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_008768836   ⟸   XM_008770614
- Peptide Label: isoform X30
- Sequence:
RefSeq Acc Id: XP_017455335   ⟸   XM_017599846
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017455334   ⟸   XM_017599845
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017455338   ⟸   XM_017599849
- Peptide Label: isoform X34
- Sequence:
RefSeq Acc Id: XP_017455337   ⟸   XM_017599848
- Peptide Label: isoform X33
- Sequence:
RefSeq Acc Id: XP_017455339   ⟸   XM_017599850
- Peptide Label: isoform X35
- Sequence:
RefSeq Acc Id: ENSRNOP00000016449   ⟸   ENSRNOT00000016449
RefSeq Acc Id: XP_038949719   ⟸   XM_039093791
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949727   ⟸   XM_039093799
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038949738   ⟸   XM_039093810
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038949723   ⟸   XM_039093795
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949725   ⟸   XM_039093797
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038949732   ⟸   XM_039093804
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038949741   ⟸   XM_039093813
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038949744   ⟸   XM_039093816
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038949748   ⟸   XM_039093820
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038949722   ⟸   XM_039093794
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949740   ⟸   XM_039093812
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038949731   ⟸   XM_039093803
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038949724   ⟸   XM_039093796
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038949718   ⟸   XM_039093790
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949729   ⟸   XM_039093801
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038949730   ⟸   XM_039093802
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038949746   ⟸   XM_039093818
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038949728   ⟸   XM_039093800
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038949735   ⟸   XM_039093807
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038949739   ⟸   XM_039093811
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038949736   ⟸   XM_039093808
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038949745   ⟸   XM_039093817
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038949742   ⟸   XM_039093814
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038949734   ⟸   XM_039093806
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038949743   ⟸   XM_039093815
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038949720   ⟸   XM_039093792
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949721   ⟸   XM_039093793
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000092335   ⟸   ENSRNOT00000119719
RefSeq Acc Id: ENSRNOP00000086218   ⟸   ENSRNOT00000106317
RefSeq Acc Id: ENSRNOP00000089965   ⟸   ENSRNOT00000099783
RefSeq Acc Id: ENSRNOP00000077642   ⟸   ENSRNOT00000120057
RefSeq Acc Id: ENSRNOP00000094260   ⟸   ENSRNOT00000107795
RefSeq Acc Id: ENSRNOP00000092286   ⟸   ENSRNOT00000097063
Protein Domains
Rib_recp_KP_reg

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4Z9-F1-model_v2 AlphaFold D4A4Z9 1-1325 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 24480098 24480099 G T snv LE/Stm (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), Buf/N (MCW), WN/N (MCW), FHH/EurMcwi (RGD), LE/Stm (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), SR/JrHsd (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), BUF/N (2020), FHH/EurMcwi (2019), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WN/N (2020), SHR/OlalpcvMcwi (2019), GH/OmrMcwi (MCW), FHL/EurMcwi (RGD), SHR/NHsd (RGD), WAG/Rij (RGD), WKY/Gcrc (RGD), FXLE16/Stm (2020), HXB20/IpcvMcwi (2020), HXB4/IpcvMcwi (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020)
15 24543506 24543507 G A snv GK/FarMcwi (2019), MNS/Gib (RGD), GK/Ox (RGD)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 28414540 28414541 G T snv BUF/N (KNAW), KFRS3B/Kyo (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WN/N (KNAW), LL/MavRrrc (KNAW), LN/MavRrrc (KNAW), MHS/Gib (KNAW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), WAG/Rij (KNAW), ZFDM (KyushuU), FHH/EurMcwi (KNAW), FHL/EurMcwi (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), WKY/Gcrc (KNAW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), NIG-III/Hok (KyushuU), LE/Stm (KyushuU)
15 28479802 28479803 G A snv ZF (KyushuU), HTX/Kyo (KyushuU), MNS/Gib (KNAW), GK/Ox (KNAW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 20928154 20928155 G T snv BUF/N (2020), WN/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), HXB20/IpcvMcwi (2020), HXB4/IpcvMcwi (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)
15 20993251 20993252 G A snv GK/FarMcwi (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308719 AgrOrtholog
BioCyc Gene G2FUF-14138 BioCyc
Ensembl Genes ENSRNOG00000012255 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016449 ENTREZGENE
  ENSRNOP00000016449.7 UniProtKB/TrEMBL
  ENSRNOP00000077642 ENTREZGENE
  ENSRNOP00000077642.1 UniProtKB/TrEMBL
  ENSRNOP00000086218 ENTREZGENE
  ENSRNOP00000086218.1 UniProtKB/TrEMBL
  ENSRNOP00000089965 ENTREZGENE
  ENSRNOP00000089965.1 UniProtKB/TrEMBL
  ENSRNOP00000092286 ENTREZGENE
  ENSRNOP00000092286.1 UniProtKB/TrEMBL
  ENSRNOP00000092335 ENTREZGENE
  ENSRNOP00000092335.1 UniProtKB/TrEMBL
  ENSRNOP00000094260 ENTREZGENE
  ENSRNOP00000094260.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016449 ENTREZGENE
  ENSRNOT00000016449.9 UniProtKB/TrEMBL
  ENSRNOT00000097063 ENTREZGENE
  ENSRNOT00000097063.1 UniProtKB/TrEMBL
  ENSRNOT00000099783 ENTREZGENE
  ENSRNOT00000099783.1 UniProtKB/TrEMBL
  ENSRNOT00000106317 ENTREZGENE
  ENSRNOT00000106317.1 UniProtKB/TrEMBL
  ENSRNOT00000107795 ENTREZGENE
  ENSRNOT00000107795.1 UniProtKB/TrEMBL
  ENSRNOT00000119719 ENTREZGENE
  ENSRNOT00000119719.1 UniProtKB/TrEMBL
  ENSRNOT00000120057 ENTREZGENE
  ENSRNOT00000120057.1 UniProtKB/TrEMBL
InterPro Kinectin UniProtKB/TrEMBL
  Rib_rcpt_KP UniProtKB/TrEMBL
KEGG Report rno:361029 UniProtKB/TrEMBL
NCBI Gene 361029 ENTREZGENE
PANTHER PTHR18864 UniProtKB/TrEMBL
Pfam Rib_recp_KP_reg UniProtKB/TrEMBL
PhenoGen Ktn1 PhenoGen
UniProt A0A8I5Y832_RAT UniProtKB/TrEMBL
  A0A8I6A4W2_RAT UniProtKB/TrEMBL
  A0A8I6ACR7_RAT UniProtKB/TrEMBL
  A0A8I6AHJ4_RAT UniProtKB/TrEMBL
  A0A8I6AJ62_RAT UniProtKB/TrEMBL
  A0A8I6AVJ5_RAT UniProtKB/TrEMBL
  D4A4Z9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Ktn1  kinectin 1  Ktn1  kinectin 1 (kinesin receptor)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-19 Ktn1  kinectin 1 (kinesin receptor)  Ktn1  kinectin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ktn1  kinectin 1   Ktn1_predicted  kinectin 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ktn1_predicted  kinectin 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED