Galk2 (galactokinase 2) - Rat Genome Database

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Gene: Galk2 (galactokinase 2) Rattus norvegicus
Analyze
Symbol: Galk2
Name: galactokinase 2
RGD ID: 1308691
Description: Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human GALK2 (galactokinase 2); PARTICIPATES IN amino sugar metabolic pathway; galactose metabolic pathway; nucleotide sugar metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: galNAc kinase; LOC296117; LOC362209; N-acetylgalactosamine kinase; similar to N-acetylgalactosamine kinase (GalNAc kinase) (Galactokinase 2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23113,110,057 - 113,243,014 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3113,110,030 - 113,233,306 (+)Ensembl
Rnor_6.03118,137,097 - 118,268,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,136,838 - 118,268,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03124,661,798 - 124,793,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43113,173,734 - 113,418,061 (+)NCBIRGSC3.4rn4RGSC3.4
Celera3111,972,145 - 112,085,987 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7542884   PMID:15489334  


Genomics

Comparative Map Data
Galk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23113,110,057 - 113,243,014 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3113,110,030 - 113,233,306 (+)Ensembl
Rnor_6.03118,137,097 - 118,268,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,136,838 - 118,268,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03124,661,798 - 124,793,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43113,173,734 - 113,418,061 (+)NCBIRGSC3.4rn4RGSC3.4
Celera3111,972,145 - 112,085,987 (+)NCBICelera
Cytogenetic Map3q36NCBI
GALK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381549,155,774 - 49,367,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1549,155,656 - 49,367,869 (+)EnsemblGRCh38hg38GRCh38
GRCh371549,447,971 - 49,624,079 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361547,235,268 - 47,409,294 (+)NCBINCBI36hg18NCBI36
Build 341547,249,713 - 47,409,294NCBI
Celera1526,341,552 - 26,515,592 (+)NCBI
Cytogenetic Map15q21.1-q21.2NCBI
HuRef1526,280,047 - 26,453,966 (+)NCBIHuRef
CHM1_11549,566,269 - 49,740,116 (+)NCBICHM1_1
T2T-CHM13v2.01546,963,986 - 47,140,091 (+)NCBI
Galk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392125,701,029 - 125,826,218 (+)NCBIGRCm39mm39
GRCm39 Ensembl2125,701,029 - 125,826,219 (+)Ensembl
GRCm382125,859,109 - 125,984,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,859,109 - 125,984,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv372125,684,954 - 125,810,034 (+)NCBIGRCm37mm9NCBIm37
MGSCv362125,550,659 - 125,675,739 (+)NCBImm8
Celera2127,103,240 - 127,227,668 (+)NCBICelera
Cytogenetic Map2F1NCBI
Galk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,751,764 - 4,860,584 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,751,764 - 4,852,395 (-)NCBIChiLan1.0ChiLan1.0
GALK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11546,426,500 - 46,601,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1546,440,759 - 46,600,440 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01528,103,719 - 28,278,718 (+)NCBIMhudiblu_PPA_v0panPan3
GALK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13015,365,659 - 15,494,681 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3015,365,690 - 15,494,307 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3015,289,459 - 15,419,903 (+)NCBI
ROS_Cfam_1.03015,501,612 - 15,638,828 (+)NCBI
ROS_Cfam_1.0 Ensembl3015,501,581 - 15,752,197 (+)Ensembl
UMICH_Zoey_3.13015,425,107 - 15,562,222 (+)NCBI
UNSW_CanFamBas_1.03015,546,581 - 15,677,191 (+)NCBI
UU_Cfam_GSD_1.03015,652,501 - 15,781,917 (+)NCBI
Galk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864093,589,122 - 93,724,080 (+)NCBI
SpeTri2.0NW_00493647111,448,689 - 11,572,102 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,369,545 - 122,542,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,370,616 - 122,542,287 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21136,147,563 - 136,319,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12633,973,843 - 34,136,345 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2633,969,657 - 34,122,115 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048106,992,233 - 107,155,570 (+)NCBIVero_WHO_p1.0
Galk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473110,533,174 - 10,642,836 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473110,533,443 - 10,642,561 (-)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:31
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000012447
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 56 40 19 40 64 35 41 11
Low 19 1 1 1 8 11 10 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012447   ⟹   ENSRNOP00000012447
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3113,117,540 - 113,233,300 (+)Ensembl
Rnor_6.0 Ensembl3118,144,596 - 118,268,836 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079023   ⟹   ENSRNOP00000069500
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3113,110,093 - 113,233,306 (+)Ensembl
Rnor_6.0 Ensembl3118,144,672 - 118,268,517 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083356   ⟹   ENSRNOP00000068802
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3113,110,030 - 113,233,302 (+)Ensembl
Rnor_6.0 Ensembl3118,136,838 - 118,268,715 (+)Ensembl
RefSeq Acc Id: NM_001013919   ⟹   NP_001013941
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,556 - 113,233,304 (+)NCBI
Rnor_6.03118,144,596 - 118,268,838 (+)NCBI
Rnor_5.03124,661,798 - 124,793,303 (+)NCBI
RGSC_v3.43113,173,734 - 113,418,061 (+)RGD
Celera3111,972,145 - 112,085,987 (+)RGD
Sequence:
RefSeq Acc Id: XM_006234904   ⟹   XP_006234966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,713 - 113,233,304 (+)NCBI
Rnor_6.03118,160,076 - 118,268,838 (+)NCBI
Rnor_5.03124,661,798 - 124,793,303 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234906   ⟹   XP_006234968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,535 - 113,233,304 (+)NCBI
Rnor_6.03118,144,543 - 118,268,838 (+)NCBI
Rnor_5.03124,661,798 - 124,793,303 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591576   ⟹   XP_017447065
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,110,057 - 113,233,304 (+)NCBI
Rnor_6.03118,137,097 - 118,268,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104556   ⟹   XP_038960484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,518 - 113,243,014 (+)NCBI
RefSeq Acc Id: XM_039104557   ⟹   XP_038960485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,110,127 - 113,233,304 (+)NCBI
RefSeq Acc Id: XM_039104558   ⟹   XP_038960486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,521 - 113,233,304 (+)NCBI
RefSeq Acc Id: XM_039104559   ⟹   XP_038960487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,110,127 - 113,233,304 (+)NCBI
RefSeq Acc Id: XM_039104560   ⟹   XP_038960488
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,110,069 - 113,233,304 (+)NCBI
RefSeq Acc Id: XM_039104561   ⟹   XP_038960489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,183,116 - 113,233,304 (+)NCBI
RefSeq Acc Id: XM_039104562   ⟹   XP_038960490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,174,083 - 113,233,304 (+)NCBI
RefSeq Acc Id: XR_005501813
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,519 - 113,232,912 (+)NCBI
RefSeq Acc Id: XR_005501814
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,517 - 113,233,304 (+)NCBI
RefSeq Acc Id: XR_005501815
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,516 - 113,242,648 (+)NCBI
RefSeq Acc Id: XR_005501816
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23113,117,516 - 113,230,371 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001013941   ⟸   NM_001013919
- UniProtKB: Q5XIG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234968   ⟸   XM_006234906
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006234966   ⟸   XM_006234904
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017447065   ⟸   XM_017591576
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000069500   ⟸   ENSRNOT00000079023
RefSeq Acc Id: ENSRNOP00000012447   ⟸   ENSRNOT00000012447
RefSeq Acc Id: ENSRNOP00000068802   ⟸   ENSRNOT00000083356
RefSeq Acc Id: XP_038960488   ⟸   XM_039104560
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038960485   ⟸   XM_039104557
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038960487   ⟸   XM_039104559
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038960484   ⟸   XM_039104556
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960486   ⟸   XM_039104558
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038960490   ⟸   XM_039104562
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038960489   ⟸   XM_039104561
- Peptide Label: isoform X8
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIG6-F1-model_v2 AlphaFold Q5XIG6 1-458 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692384
Promoter ID:EPDNEW_R2909
Type:initiation region
Name:Galk2_1
Description:galactokinase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03118,144,608 - 118,144,668EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308691 AgrOrtholog
BioCyc Gene G2FUF-48030 BioCyc
Ensembl Genes ENSRNOG00000009289 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000012447 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000068802 ENTREZGENE
  ENSRNOP00000068802.1 UniProtKB/TrEMBL
  ENSRNOP00000069500 ENTREZGENE
  ENSRNOP00000069500.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012447 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000079023 ENTREZGENE
  ENSRNOT00000079023.2 UniProtKB/TrEMBL
  ENSRNOT00000083356 ENTREZGENE
  ENSRNOT00000083356.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7190694 IMAGE-MGC_LOAD
InterPro Galactokinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactokinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GalKase_gal-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinase_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinase_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_knse_ATP-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mevalonate/galactokinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296117 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94607 IMAGE-MGC_LOAD
NCBI Gene 296117 ENTREZGENE
Pfam GalKase_gal_bdg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinases_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Galk2 PhenoGen
PIRSF Galactokinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GALCTOKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GALACTOKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_KINASES_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55060 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs gal_kin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JTQ5_RAT UniProtKB/TrEMBL
  A0A8L2UPK8_RAT UniProtKB/TrEMBL
  GALK2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-03-14 Galk2  galactokinase 2  Galk2_predicted  galactokinase 2 (predicted)  Symbol and Name updated 1299863 APPROVED
2007-02-12 Galk2_predicted  galactokinase 2 (predicted)  LOC296117  similar to N-acetylgalactosamine kinase (GalNAc kinase) (Galactokinase 2)  Data Merged 737654 APPROVED
2006-02-09 LOC296117  similar to N-acetylgalactosamine kinase (GalNAc kinase) (Galactokinase 2)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Galk2_predicted  galactokinase 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED