Map10 (microtubule-associated protein 10) - Rat Genome Database

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Gene: Map10 (microtubule-associated protein 10) Rattus norvegicus
Analyze
Symbol: Map10
Name: microtubule-associated protein 10
RGD ID: 1308644
Description: Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization; positive regulation of cytokinesis; and regulation of microtubule-based process. Predicted to be active in microtubule cytoskeleton and midbody. Orthologous to human MAP10 (microtubule associated protein 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307948; microtubule regulator of 120 KDa; RGD1308644; similar to Hypothetical protein KIAA1383; uncharacterized protein KIAA1383 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21953,642,156 - 53,644,948 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1953,642,156 - 53,644,948 (+)Ensembl
Rnor_6.01958,505,811 - 58,508,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1958,505,811 - 58,508,603 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01969,203,363 - 69,206,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,879,310 - 55,882,308 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1953,003,421 - 53,006,213 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IBA,ISO,ISS)
cytoplasmic microtubule  (IBA,ISO,ISS)
midbody  (IBA,ISO,ISS)
mitotic spindle midzone  (IBA,ISO,ISS)
mitotic spindle pole  (IBA,ISO,ISS)

Molecular Function
microtubule binding  (IBA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23264731  


Genomics

Comparative Map Data
Map10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21953,642,156 - 53,644,948 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1953,642,156 - 53,644,948 (+)Ensembl
Rnor_6.01958,505,811 - 58,508,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1958,505,811 - 58,508,603 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01969,203,363 - 69,206,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,879,310 - 55,882,308 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1953,003,421 - 53,006,213 (+)NCBICelera
Cytogenetic Map19q12NCBI
MAP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381232,805,416 - 232,809,929 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1232,805,416 - 232,809,929 (+)EnsemblGRCh38hg38GRCh38
GRCh371232,941,162 - 232,945,675 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361231,007,261 - 231,012,715 (+)NCBINCBI36hg18NCBI36
Celera1206,211,063 - 206,216,517 (+)NCBI
Cytogenetic Map1q42.2NCBI
HuRef1203,430,361 - 203,435,815 (+)NCBIHuRef
CHM1_11234,214,285 - 234,219,739 (+)NCBICHM1_1
T2T-CHM13v2.01232,191,843 - 232,196,356 (+)NCBI
Map10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398126,396,557 - 126,400,104 (+)NCBIGRCm39mm39
GRCm39 Ensembl8126,396,557 - 126,400,098 (+)Ensembl
GRCm388125,669,818 - 125,673,365 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8125,669,818 - 125,673,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv378128,193,718 - 128,197,265 (+)NCBIGRCm37mm9NCBIm37
MGSCv368128,555,956 - 128,559,446 (+)NCBImm8
Celera8129,983,066 - 129,986,613 (+)NCBICelera
Cytogenetic Map8E2NCBI
Map10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554926,401,173 - 6,404,068 (-)NCBIChiLan1.0ChiLan1.0
MAP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11213,370,599 - 213,374,422 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,371,044 - 213,374,187 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01208,352,323 - 208,357,555 (+)NCBIMhudiblu_PPA_v0panPan3
MAP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.146,867,323 - 6,870,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl46,867,326 - 6,870,063 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha46,854,273 - 6,858,279 (-)NCBI
ROS_Cfam_1.046,888,191 - 6,892,173 (-)NCBI
ROS_Cfam_1.0 Ensembl46,889,414 - 6,892,158 (-)Ensembl
UMICH_Zoey_3.146,897,856 - 6,901,857 (-)NCBI
UNSW_CanFamBas_1.047,018,473 - 7,022,475 (-)NCBI
UU_Cfam_GSD_1.047,242,533 - 7,246,539 (-)NCBI
Map10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934442,465,719 - 42,468,911 (-)NCBI
SpeTri2.0NW_00493648418,630,595 - 18,634,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1457,969,630 - 57,972,322 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11457,967,663 - 57,978,573 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21462,012,112 - 62,094,996 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12570,022,711 - 70,026,303 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2570,023,344 - 70,026,067 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605571,973,917 - 71,978,670 (+)NCBIVero_WHO_p1.0
Map10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477517,171,998 - 17,175,494 (-)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:107
Interacting mature miRNAs:116
Transcripts:ENSRNOT00000031717
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 43 52 41 14 41 8 11 74 35 34 11 8
Below cutoff 5 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000031717   ⟹   ENSRNOP00000036118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1953,642,156 - 53,644,948 (+)Ensembl
Rnor_6.0 Ensembl1958,505,811 - 58,508,603 (+)Ensembl
RefSeq Acc Id: NM_001277391   ⟹   NP_001264320
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21953,642,156 - 53,644,948 (+)NCBI
Rnor_6.01958,505,811 - 58,508,603 (+)NCBI
Rnor_5.01969,203,363 - 69,206,155 (+)NCBI
Celera1953,003,421 - 53,006,213 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001264320 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZAP3 (Get FASTA)   NCBI Sequence Viewer  
  EDL96759 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001264320   ⟸   NM_001277391
- UniProtKB: D3ZAP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000036118   ⟸   ENSRNOT00000031717

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAP3-F1-model_v2 AlphaFold D3ZAP3 1-888 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701249
Promoter ID:EPDNEW_R11772
Type:single initiation site
Name:Map10_1
Description:microtubule-associated protein 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01958,505,802 - 58,505,862EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 58506083 58506084 C G snv WKY/N (2020), WN/N (2020), WAG/RijCrl (2020), MR/N (2020), LEXF10A/StmMcwi (2020), LE/Stm (2019), LEXF2B/Stm (2019), LEXF1A/Stm (2019), LEW/Crl (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/N (2020), ACI/EurMcwi (2019), WKY/NCrl (RGD), WAG/Rij (RGD), SBN/Ygl (RGD), LEW/NCrlBR (RGD), LE/Stm (RGD), FHL/EurMcwi (RGD), ACI/EurMcwi (RGD), MR/N (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), WKY/NCrl (2019)
19 58508234 58508235 A T snv WAG/Rij (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF10A/StmMcwi (2020), LEW/NCrlBR (RGD), FHL/EurMcwi (RGD), WKY/N (MCW), FHL/EurMcwi (MCW), WKY/N (2020), WN/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), MR/N (2020), LE/Stm (2019), LEW/Crl (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/N (2020), ACI/EurMcwi (2019), WKY/NCrl (RGD), SBN/Ygl (RGD), LEW/Crl (RGD), LE/Stm (RGD), FHH/EurMcwi (RGD), ACI/EurMcwi (RGD), WN/N (MCW), MR/N (MCW), ACI/N (MCW), SBN/Ygl (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 69203635 69203636 C G snv COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), BDIX.Cg-Tal/NemOda (KyushuU), HWY/Slc (KyushuU), RCS/Kyo (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), WKY/NHsd (KNAW), WKY/NCrl (KNAW), WKY/Gcrc (KNAW), SBN/Ygl (KNAW), LEW/NCrl (KNAW), LEW/Crl (KNAW), LE/Stm (Illumina) (KNAW), FHL/EurMcwi (KNAW), FHH/EurMcwi (KNAW), DA/BklArbNsi (KNAW), ACI/EurMcwi (KNAW), ACI/N (KNAW), WAG/Rij (KNAW), SS/Jr (KNAW), MR/N (KNAW), WN/N (KNAW), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
19 69203644 69203645 C A snv LEC/Tj (KyushuU)
19 69205786 69205787 A T snv IS-Tlk/Kyo (KyushuU), HWY/Slc (KyushuU), BDIX/NemOda (KyushuU), RCS/Kyo (KyushuU), LE/Stm (KyushuU), IS/Kyo (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), WKY/NHsd (KNAW), WKY/NCrl (KNAW), WKY/N (KNAW), WKY/Gcrc (KNAW), SBN/Ygl (KNAW), LEW/NCrl (KNAW), LEW/Crl (KNAW), LE/Stm (SOLiD) (KNAW), LE/Stm (Illumina) (KNAW), FHL/EurMcwi (KNAW), FHH/EurMcwi (KNAW), DA/BklArbNsi (KNAW), ACI/EurMcwi (KNAW), ACI/N (KNAW), WAG/Rij (KNAW), MR/N (KNAW), WN/N (KNAW), SBN/Ygl (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), BDIX.Cg-Tal/NemOda (KyushuU), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 53642428 53642429 C G snv ACI/EurMcwi (2019), ACI/N (2020), WN/N (2020), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), MR/N (2020), LEXF10A/StmMcwi (2020), LE/Stm (2019), LEXF2B/Stm (2019), LEXF1A/Stm (2019), LEW/Crl (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019)
19 53644579 53644580 A T snv ACI/EurMcwi (2019), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), MR/N (2020), LEXF10A/StmMcwi (2020), WN/N (2020), LEXF2B/Stm (2019), LEXF1A/Stm (2019), LEW/Crl (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/N (2020), LE/Stm (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308644 AgrOrtholog
BioCyc Gene G2FUF-5204 BioCyc
Ensembl Genes ENSRNOG00000028652 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000036118 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000031717 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro MAP10 UniProtKB/Swiss-Prot
  MAP10_C-term UniProtKB/Swiss-Prot
KEGG Report rno:307948 UniProtKB/Swiss-Prot
NCBI Gene 307948 ENTREZGENE
PANTHER PTHR21831 UniProtKB/Swiss-Prot
Pfam HPHLAWLY UniProtKB/Swiss-Prot
PhenoGen Map10 PhenoGen
UniProt D3ZAP3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-01 Map10  microtubule-associated protein 10  RGD1308644  similar to Hypothetical protein KIAA1383  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308644  similar to Hypothetical protein KIAA1383   RGD1308644_predicted  similar to Hypothetical protein KIAA1383 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308644_predicted  similar to Hypothetical protein KIAA1383 (predicted)  LOC307948_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307948_predicted  similar to Hypothetical protein KIAA1383 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL