Ddhd1 (DDHD domain containing 1) - Rat Genome Database

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Gene: Ddhd1 (DDHD domain containing 1) Rattus norvegicus
Analyze
Symbol: Ddhd1
Name: DDHD domain containing 1
RGD ID: 1308576
Description: Predicted to enable phospholipase activity. Predicted to act upstream of or within positive regulation of mitochondrial fission and sperm mitochondrion organization. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 28. Orthologous to human DDHD1 (DDHD domain containing 1); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305816; MGC125147; phospholipase DDHD1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81521,304,053 - 21,370,608 (-)NCBIGRCr8
mRatBN7.21518,824,389 - 18,891,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1521,614,390 - 21,680,558 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01522,571,355 - 22,637,530 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01520,827,932 - 20,894,116 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,963,639 - 20,032,263 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,965,187 - 20,032,191 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01523,928,012 - 23,996,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41521,500,775 - 21,569,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11521,612,527 - 21,701,319 (-)NCBI
Celera1519,250,159 - 19,316,711 (-)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
bisphenol A  (EXP)
buspirone  (EXP)
caffeine  (EXP)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium atom  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
indole-3-methanol  (EXP)
inulin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
levofloxacin  (EXP)
levonorgestrel  (ISO)
lipopolysaccharide  (ISO)
metformin  (EXP)
methoxyacetic acid  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (EXP)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nevirapine  (EXP)
nicotinic acid  (ISO)
nimesulide  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24599962  


Genomics

Comparative Map Data
Ddhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81521,304,053 - 21,370,608 (-)NCBIGRCr8
mRatBN7.21518,824,389 - 18,891,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1521,614,390 - 21,680,558 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01522,571,355 - 22,637,530 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01520,827,932 - 20,894,116 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,963,639 - 20,032,263 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,965,187 - 20,032,191 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01523,928,012 - 23,996,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41521,500,775 - 21,569,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11521,612,527 - 21,701,319 (-)NCBI
Celera1519,250,159 - 19,316,711 (-)NCBICelera
Cytogenetic Map15p14NCBI
DDHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381453,036,755 - 53,153,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1453,036,745 - 53,153,323 (-)EnsemblGRCh38hg38GRCh38
GRCh371453,503,473 - 53,620,041 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361452,582,491 - 52,689,750 (-)NCBINCBI36Build 36hg18NCBI36
Build 341452,582,492 - 52,689,750NCBI
Celera1433,553,197 - 33,669,789 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1433,666,558 - 33,783,254 (-)NCBIHuRef
CHM1_11453,442,348 - 53,558,925 (-)NCBICHM1_1
T2T-CHM13v2.01447,244,731 - 47,361,295 (-)NCBIT2T-CHM13v2.0
Ddhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,830,628 - 45,895,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1445,825,924 - 45,895,600 (-)EnsemblGRCm39 Ensembl
GRCm381445,593,171 - 45,658,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1445,588,467 - 45,658,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv371446,212,849 - 46,277,818 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361444,517,294 - 44,580,020 (-)NCBIMGSCv36mm8
Celera1441,777,214 - 41,851,208 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1423.14NCBI
Ddhd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,110,812 - 10,183,068 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540910,111,299 - 10,185,603 (+)NCBIChiLan1.0ChiLan1.0
DDHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21554,175,078 - 54,289,704 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11453,391,590 - 53,503,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01433,640,543 - 33,752,343 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11451,922,230 - 52,032,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,922,230 - 52,032,780 (-)Ensemblpanpan1.1panPan2
DDHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1829,230,831 - 29,341,886 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl829,233,162 - 29,341,750 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha828,975,440 - 29,086,545 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0829,463,592 - 29,572,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl829,463,605 - 29,572,477 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1829,073,561 - 29,180,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0829,146,615 - 29,253,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0829,472,800 - 29,581,807 (-)NCBIUU_Cfam_GSD_1.0
Ddhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,011,868 - 76,088,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366971,786,017 - 1,860,614 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366971,786,023 - 1,863,084 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1182,667,428 - 182,754,207 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11182,667,102 - 182,754,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21202,934,424 - 203,018,775 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DDHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12430,156,657 - 30,280,421 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2430,157,406 - 30,280,289 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605318,414,489 - 18,537,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddhd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473116,009,331 - 16,095,985 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473116,009,976 - 16,098,369 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ddhd1
452 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:67
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000032704
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat

Markers in Region
BE121284  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21518,836,464 - 18,836,649 (+)MAPPERmRatBN7.2
Rnor_6.01519,977,258 - 19,977,442NCBIRnor6.0
Rnor_5.01523,941,631 - 23,941,815UniSTSRnor5.0
RGSC_v3.41521,512,849 - 21,513,033UniSTSRGSC3.4
Celera1519,262,233 - 19,262,417UniSTS
RH 3.4 Map15145.6UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC103649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000032704   ⟹   ENSRNOP00000035399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
Rnor_6.0 Ensembl1519,965,187 - 20,032,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102887   ⟹   ENSRNOP00000093499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105389   ⟹   ENSRNOP00000076372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1518,824,507 - 18,890,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111596   ⟹   ENSRNOP00000092577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114252   ⟹   ENSRNOP00000081184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
RefSeq Acc Id: NM_001033066   ⟹   NP_001028238
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,055 - 21,370,608 (-)NCBI
mRatBN7.21518,824,391 - 18,890,952 (-)NCBI
Rnor_6.01519,965,184 - 20,032,191 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
RGSC_v3.41521,500,775 - 21,569,296 (-)RGD
Celera1519,250,159 - 19,316,711 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251769   ⟹   XP_006251831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,263 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251770   ⟹   XP_006251832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,263 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251772   ⟹   XP_006251834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,263 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251773   ⟹   XP_006251835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,262 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251774   ⟹   XP_006251836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,262 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093255   ⟹   XP_038949183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
RefSeq Acc Id: XM_039093257   ⟹   XP_038949185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,319,642 - 21,370,539 (-)NCBI
mRatBN7.21518,840,009 - 18,891,036 (-)NCBI
RefSeq Acc Id: XM_063274205   ⟹   XP_063130275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
RefSeq Acc Id: NP_001028238   ⟸   NM_001033066
- UniProtKB: Q3ZAU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251832   ⟸   XM_006251770
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006251834   ⟸   XM_006251772
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006251831   ⟸   XM_006251769
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZK24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251835   ⟸   XM_006251773
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006251836   ⟸   XM_006251774
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ADX7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035399   ⟸   ENSRNOT00000032704
RefSeq Acc Id: XP_038949183   ⟸   XM_039093255
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AX45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949185   ⟸   XM_039093257
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000081184   ⟸   ENSRNOT00000114252
Ensembl Acc Id: ENSRNOP00000093499   ⟸   ENSRNOT00000102887
Ensembl Acc Id: ENSRNOP00000092577   ⟸   ENSRNOT00000111596
Ensembl Acc Id: ENSRNOP00000076372   ⟸   ENSRNOT00000105389
RefSeq Acc Id: XP_063130275   ⟸   XM_063274205
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZSB2 (UniProtKB/TrEMBL)
Protein Domains
DDHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZAU5-F1-model_v2 AlphaFold Q3ZAU5 1-855 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699599
Promoter ID:EPDNEW_R10123
Type:multiple initiation site
Name:Ddhd1_1
Description:DDHD domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01520,032,155 - 20,032,215EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308576 AgrOrtholog
BioCyc Gene G2FUF-14207 BioCyc
BioCyc Pathway PWY-8052 [2-arachidonoylglycerol biosynthesis] BioCyc
BioCyc Pathway Image PWY-8052 BioCyc
Ensembl Genes ENSRNOG00000009481 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032704.6 UniProtKB/TrEMBL
  ENSRNOT00000102887.1 UniProtKB/TrEMBL
  ENSRNOT00000105389.1 UniProtKB/TrEMBL
  ENSRNOT00000111596.1 UniProtKB/TrEMBL
  ENSRNOT00000114252.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314879 IMAGE-MGC_LOAD
InterPro DDHD UniProtKB/TrEMBL
KEGG Report rno:305816 UniProtKB/TrEMBL
MGC_CLONE MGC:125147 IMAGE-MGC_LOAD
NCBI Gene 305816 ENTREZGENE
PANTHER PA-PL1 PHOSPHOLIPASE FAMILY UniProtKB/TrEMBL
  PHOSPHOLIPASE DDHD1 UniProtKB/TrEMBL
Pfam DDHD UniProtKB/TrEMBL
PhenoGen Ddhd1 PhenoGen
PROSITE DDHD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009481 RatGTEx
SMART DDHD UniProtKB/TrEMBL
UniProt A0A8I5ZK24 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADX7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AX45 ENTREZGENE, UniProtKB/TrEMBL
  A6KE05_RAT UniProtKB/TrEMBL
  A6KE06_RAT UniProtKB/TrEMBL
  Q3ZAU5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ddhd1  DDHD domain containing 1  Ddhd1_predicted  DDHD domain containing 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ddhd1_predicted  DDHD domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED