Flrt2 (fibronectin leucine rich transmembrane protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Flrt2 (fibronectin leucine rich transmembrane protein 2) Rattus norvegicus
Analyze
Symbol: Flrt2
Name: fibronectin leucine rich transmembrane protein 2
RGD ID: 1308574
Description: Predicted to enable chemorepellent activity and fibroblast growth factor receptor binding activity. Involved in regulation of postsynapse assembly. Is active in glutamatergic synapse and postsynaptic membrane. Orthologous to human FLRT2 (fibronectin leucine rich transmembrane protein 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: fibronectin-like domain-containing leucine-rich transmembrane protein 2; leucine-rich repeat transmembrane protein FLRT2; LOC299236
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86120,507,998 - 120,603,133 (+)NCBIGRCr8
mRatBN7.26114,777,547 - 114,872,688 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6114,777,599 - 114,872,785 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6114,942,341 - 115,033,832 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06115,241,032 - 115,330,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06114,575,936 - 114,665,510 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06119,518,459 - 119,613,534 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6119,519,714 - 119,609,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06128,739,108 - 128,832,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46119,569,366 - 119,658,949 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16119,648,546 - 119,665,217 (+)NCBI
Celera6112,434,783 - 112,524,482 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cis-caffeic acid  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
fonofos  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
maneb  (ISO)
manganese(II) chloride  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
O-methyleugenol  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
parathion  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
terbufos  (ISO)
testosterone  (EXP)
testosterone enanthate  (ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP,ISO)
torcetrapib  (ISO)
trans-caffeic acid  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. A Modular Organization of LRR Protein-Mediated Synaptic Adhesion Defines Synapse Identity. Schroeder A, etal., Neuron. 2018 Jul 25;99(2):329-344.e7. doi: 10.1016/j.neuron.2018.06.026. Epub 2018 Jul 5.
Additional References at PubMed
PMID:16872596   PMID:21350012   PMID:21423176   PMID:21673655   PMID:23376485   PMID:23533145   PMID:24613359   PMID:38587072  


Genomics

Comparative Map Data
Flrt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86120,507,998 - 120,603,133 (+)NCBIGRCr8
mRatBN7.26114,777,547 - 114,872,688 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6114,777,599 - 114,872,785 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6114,942,341 - 115,033,832 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06115,241,032 - 115,330,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06114,575,936 - 114,665,510 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06119,518,459 - 119,613,534 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6119,519,714 - 119,609,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06128,739,108 - 128,832,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46119,569,366 - 119,658,949 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16119,648,546 - 119,665,217 (+)NCBI
Celera6112,434,783 - 112,524,482 (+)NCBICelera
Cytogenetic Map6q31NCBI
FLRT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381485,530,144 - 85,654,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1485,530,144 - 85,654,428 (+)EnsemblGRCh38hg38GRCh38
GRCh371485,996,488 - 86,120,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361485,066,241 - 85,164,023 (+)NCBINCBI36Build 36hg18NCBI36
Build 341485,157,274 - 85,164,016NCBI
Celera1466,040,840 - 66,138,639 (+)NCBICelera
Cytogenetic Map14q31.3NCBI
HuRef1466,165,769 - 66,263,573 (+)NCBIHuRef
CHM1_11485,934,262 - 86,032,186 (+)NCBICHM1_1
T2T-CHM13v2.01479,742,250 - 79,868,256 (+)NCBIT2T-CHM13v2.0
Flrt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391295,658,780 - 95,751,989 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1295,659,000 - 95,751,989 (+)EnsemblGRCm39 Ensembl
GRCm381295,692,006 - 95,785,215 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1295,692,226 - 95,785,215 (+)EnsemblGRCm38mm10GRCm38
MGSCv371296,930,436 - 97,023,425 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361296,088,085 - 96,176,856 (+)NCBIMGSCv36mm8
Celera1296,935,203 - 97,028,175 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1246.44NCBI
Flrt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554388,565,319 - 8,656,186 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554388,565,319 - 8,656,195 (+)NCBIChiLan1.0ChiLan1.0
FLRT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21586,647,366 - 86,747,309 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11485,861,376 - 85,972,952 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01466,114,208 - 66,738,948 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11485,482,218 - 85,579,867 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1485,572,250 - 85,574,232 (+)Ensemblpanpan1.1panPan2
FLRT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1857,234,748 - 57,334,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl857,326,238 - 57,328,220 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha856,811,905 - 56,911,952 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0857,490,477 - 57,590,816 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl857,490,620 - 57,587,420 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1857,184,414 - 57,280,451 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0857,218,309 - 57,318,324 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0857,560,012 - 57,660,315 (+)NCBIUU_Cfam_GSD_1.0
Flrt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864018,611,370 - 18,696,033 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648813,373,030 - 13,457,300 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648813,372,889 - 13,457,586 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLRT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7107,812,613 - 107,913,618 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17107,812,354 - 107,913,006 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27114,356,715 - 114,364,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FLRT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12463,169,746 - 63,174,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2463,170,210 - 63,172,192 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605350,601,261 - 50,701,130 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Flrt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473416,587,357 - 16,676,063 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473416,587,367 - 16,674,998 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Flrt2
739 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:20
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000004955
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat

Markers in Region
AU047139  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26114,788,466 - 114,788,586 (+)MAPPERmRatBN7.2
Rnor_6.06119,529,308 - 119,529,427NCBIRnor6.0
Rnor_5.06128,748,702 - 128,748,821UniSTSRnor5.0
RGSC_v3.46119,578,960 - 119,579,079UniSTSRGSC3.4
Celera6112,444,379 - 112,444,498UniSTS
Cytogenetic Map6q31-q32UniSTS
RH138095  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26114,781,032 - 114,781,159 (+)MAPPERmRatBN7.2
Rnor_6.06119,521,875 - 119,522,001NCBIRnor6.0
Rnor_5.06128,741,269 - 128,741,395UniSTSRnor5.0
RGSC_v3.46119,571,527 - 119,571,653UniSTSRGSC3.4
Celera6112,436,944 - 112,437,070UniSTS
RH 3.4 Map6757.8UniSTS
Cytogenetic Map6q31-q32UniSTS
BF390054  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26114,833,762 - 114,834,008 (+)MAPPERmRatBN7.2
Rnor_6.06119,574,619 - 119,574,864NCBIRnor6.0
Rnor_5.06128,794,013 - 128,794,258UniSTSRnor5.0
RGSC_v3.46119,624,253 - 119,624,498UniSTSRGSC3.4
Celera6112,489,680 - 112,489,925UniSTS
RH 3.4 Map6757.99UniSTS
Cytogenetic Map6q31-q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000004955   ⟹   ENSRNOP00000004955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6114,778,683 - 114,872,689 (+)Ensembl
Rnor_6.0 Ensembl6119,519,714 - 119,609,296 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108960   ⟹   ENSRNOP00000076725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6114,781,842 - 114,872,785 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113363   ⟹   ENSRNOP00000083901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6114,777,599 - 114,872,785 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120043   ⟹   ENSRNOP00000079728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6114,777,622 - 114,872,689 (+)Ensembl
RefSeq Acc Id: NM_001106750   ⟹   NP_001100220
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86120,509,323 - 120,598,895 (+)NCBI
mRatBN7.26114,778,872 - 114,868,448 (+)NCBI
Rnor_6.06119,519,714 - 119,609,296 (+)NCBI
Rnor_5.06128,739,108 - 128,832,871 (+)NCBI
RGSC_v3.46119,569,366 - 119,658,949 (+)RGD
Celera6112,434,783 - 112,524,482 (+)RGD
Sequence:
RefSeq Acc Id: XM_039112060   ⟹   XP_038967988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86120,507,998 - 120,603,133 (+)NCBI
mRatBN7.26114,777,547 - 114,872,688 (+)NCBI
RefSeq Acc Id: XM_063261758   ⟹   XP_063117828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86120,507,998 - 120,603,133 (+)NCBI
RefSeq Acc Id: NP_001100220   ⟸   NM_001106750
- Peptide Label: precursor
- UniProtKB: D3ZTV3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004955   ⟸   ENSRNOT00000004955
RefSeq Acc Id: XP_038967988   ⟸   XM_039112060
- Peptide Label: isoform X1
- UniProtKB: D3ZTV3 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000079728   ⟸   ENSRNOT00000120043
Ensembl Acc Id: ENSRNOP00000076725   ⟸   ENSRNOT00000108960
Ensembl Acc Id: ENSRNOP00000083901   ⟸   ENSRNOT00000113363
RefSeq Acc Id: XP_063117828   ⟸   XM_063261758
- Peptide Label: isoform X1
- UniProtKB: D3ZTV3 (UniProtKB/Swiss-Prot)
Protein Domains
Fibronectin type-III   LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTV3-F1-model_v2 AlphaFold D3ZTV3 1-660 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694767
Promoter ID:EPDNEW_R5291
Type:multiple initiation site
Name:Flrt2_1
Description:fibronectin leucine rich transmembrane protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06119,519,705 - 119,519,765EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308574 AgrOrtholog
BioCyc Gene G2FUF-36574 BioCyc
Ensembl Genes ENSRNOG00000003732 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055015467 UniProtKB/Swiss-Prot
  ENSRNOG00060004953 UniProtKB/Swiss-Prot
  ENSRNOG00065014295 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000004955.5 UniProtKB/Swiss-Prot
  ENSRNOT00000108960.1 UniProtKB/Swiss-Prot
  ENSRNOT00000113363.1 UniProtKB/Swiss-Prot
  ENSRNOT00000120043.1 UniProtKB/Swiss-Prot
  ENSRNOT00055026387 UniProtKB/Swiss-Prot
  ENSRNOT00055026392 UniProtKB/Swiss-Prot
  ENSRNOT00055026395 UniProtKB/Swiss-Prot
  ENSRNOT00055026396 UniProtKB/Swiss-Prot
  ENSRNOT00060008260 UniProtKB/Swiss-Prot
  ENSRNOT00060008266 UniProtKB/Swiss-Prot
  ENSRNOT00060008268 UniProtKB/Swiss-Prot
  ENSRNOT00060008270 UniProtKB/Swiss-Prot
  ENSRNOT00065023570 UniProtKB/Swiss-Prot
  ENSRNOT00065023574 UniProtKB/Swiss-Prot
  ENSRNOT00065023579 UniProtKB/Swiss-Prot
  ENSRNOT00065023583 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  3.80.10.10 UniProtKB/Swiss-Prot
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot
  FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  L_dom-like UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRRNT UniProtKB/Swiss-Prot
  SLRP UniProtKB/Swiss-Prot
KEGG Report rno:299236 UniProtKB/Swiss-Prot
NCBI Gene 299236 ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/Swiss-Prot
  LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT2 UniProtKB/Swiss-Prot
Pfam fn3 UniProtKB/Swiss-Prot
  LRR_8 UniProtKB/Swiss-Prot
  LRRCT UniProtKB/Swiss-Prot
PhenoGen Flrt2 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003732 RatGTEx
  ENSRNOG00055015467 RatGTEx
  ENSRNOG00060004953 RatGTEx
  ENSRNOG00065014295 RatGTEx
SMART LRR_TYP UniProtKB/Swiss-Prot
  LRRCT UniProtKB/Swiss-Prot
  LRRNT UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt D3ZTV3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Flrt2  fibronectin leucine rich transmembrane protein 2   Flrt2_predicted  fibronectin leucine rich transmembrane protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Flrt2_predicted  fibronectin leucine rich transmembrane protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED