Bbs9 (Bardet-Biedl syndrome 9) - Rat Genome Database

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Gene: Bbs9 (Bardet-Biedl syndrome 9) Rattus norvegicus
Analyze
Symbol: Bbs9
Name: Bardet-Biedl syndrome 9
RGD ID: 1308472
Description: Predicted to be involved in cilium assembly; fat cell differentiation; and protein localization to cilium. Predicted to be located in centrosome; ciliary membrane; and ciliary transition zone. Predicted to be part of BBSome. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 9; craniosynostosis; and primary ovarian insufficiency. Orthologous to human BBS9 (Bardet-Biedl syndrome 9); INTERACTS WITH (+)-schisandrin B; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315484; RGD1308472; similar to E130103I17Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8829,288,846 - 29,713,889 (+)NCBIGRCr8
mRatBN7.2821,013,865 - 21,437,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl821,013,944 - 21,437,930 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0823,491,929 - 24,074,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,492,466 - 23,562,299 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,492,621 - 24,074,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,792,616 - 24,114,162 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0823,540,255 - 23,605,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4822,231,570 - 22,542,713 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1822,231,569 - 22,542,196 (+)NCBI
Celera822,399,130 - 22,821,885 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
pentanal  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. A genome-wide association study identifies susceptibility loci for nonsyndromic sagittal craniosynostosis near BMP2 and within BBS9. Justice CM, etal., Nat Genet. 2012 Dec;44(12):1360-4. doi: 10.1038/ng.2463. Epub 2012 Nov 18.
3. Parathyroid hormone-responsive B1 gene is associated with premature ovarian failure. Kang H, etal., Hum Reprod. 2008 Jun;23(6):1457-65. doi: 10.1093/humrep/den086. Epub 2008 Mar 18.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Comparative genomics and gene expression analysis identifies BBS9, a new Bardet-Biedl syndrome gene. Nishimura DY, etal., Am J Hum Genet. 2005 Dec;77(6):1021-33. Epub 2005 Oct 26.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:17379567   PMID:17574030   PMID:20080638   PMID:22072986   PMID:22139371   PMID:22479622   PMID:22500027   PMID:23943788   PMID:24550735  


Genomics

Comparative Map Data
Bbs9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8829,288,846 - 29,713,889 (+)NCBIGRCr8
mRatBN7.2821,013,865 - 21,437,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl821,013,944 - 21,437,930 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0823,491,929 - 24,074,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,492,466 - 23,562,299 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,492,621 - 24,074,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,792,616 - 24,114,162 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0823,540,255 - 23,605,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4822,231,570 - 22,542,713 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1822,231,569 - 22,542,196 (+)NCBI
Celera822,399,130 - 22,821,885 (+)NCBICelera
Cytogenetic Map8q13NCBI
BBS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38733,129,285 - 33,635,767 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl733,109,557 - 33,877,180 (+)EnsemblGRCh38hg38GRCh38
GRCh37733,168,897 - 33,675,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36733,135,677 - 33,612,205 (+)NCBINCBI36Build 36hg18NCBI36
Celera733,150,951 - 33,627,167 (+)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef733,048,405 - 33,526,037 (+)NCBIHuRef
CHM1_1733,168,985 - 33,645,302 (+)NCBICHM1_1
T2T-CHM13v2.0733,268,844 - 33,775,698 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2733,213,680 - 33,690,276 (+)NCBI
Bbs9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39922,386,819 - 22,799,579 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl922,387,011 - 22,799,576 (+)EnsemblGRCm39 Ensembl
GRCm38922,475,559 - 22,888,283 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,475,715 - 22,888,280 (+)EnsemblGRCm38mm10GRCm38
MGSCv37922,280,159 - 22,692,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36922,226,117 - 22,638,682 (+)NCBIMGSCv36mm8
Celera919,746,106 - 20,155,211 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map99.17NCBI
Bbs9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955582222,919 - 628,115 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955582222,926 - 628,514 (+)NCBIChiLan1.0ChiLan1.0
BBS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2637,922,493 - 38,407,492 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1786,247,224 - 86,732,227 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0733,723,923 - 34,210,408 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1734,124,812 - 34,634,710 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl734,141,841 - 34,603,231 (+)Ensemblpanpan1.1panPan2
BBS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11445,190,767 - 45,623,274 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1445,200,458 - 45,643,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1444,625,445 - 45,059,095 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01445,129,737 - 45,562,415 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1445,129,738 - 45,582,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11445,233,678 - 45,665,784 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01444,915,845 - 45,348,485 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01445,289,767 - 45,722,027 (+)NCBIUU_Cfam_GSD_1.0
Bbs9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511889,747,295 - 90,196,950 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364788,959,121 - 9,408,714 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364788,959,198 - 9,408,683 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1839,950,356 - 40,393,992 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11839,663,720 - 40,394,244 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21843,752,474 - 44,004,168 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BBS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12124,807,906 - 25,301,566 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2124,807,625 - 25,301,587 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604280,710,843 - 81,210,827 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bbs9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462498850,083 - 209,821 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bbs9
2012 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:315
Count of miRNA genes:209
Interacting mature miRNAs:243
Transcripts:ENSRNOT00000020481, ENSRNOT00000060758, ENSRNOT00000074603
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat

Markers in Region
RH135232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2821,429,097 - 21,429,316 (+)MAPPERmRatBN7.2
Rnor_6.0824,065,688 - 24,065,906NCBIRnor6.0
Rnor_5.0824,105,326 - 24,105,544UniSTSRnor5.0
RGSC_v3.4822,533,877 - 22,534,095UniSTSRGSC3.4
Celera822,813,049 - 22,813,267UniSTS
RH 3.4 Map8185.22UniSTS
Cytogenetic Map8q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 6 1 54 13 40 15
Low 6 68 96 70 32 70 16 20 94 57 42 7 16
Below cutoff 18 12 12 12 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000020481   ⟹   ENSRNOP00000020481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl821,026,071 - 21,437,930 (+)Ensembl
Rnor_6.0 Ensembl823,771,920 - 24,074,536 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl823,492,466 - 23,562,299 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl823,492,466 - 23,562,299 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl823,492,466 - 23,524,832 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092845   ⟹   ENSRNOP00000076036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl821,013,944 - 21,437,930 (+)Ensembl
Rnor_6.0 Ensembl823,854,412 - 24,074,521 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093071   ⟹   ENSRNOP00000076062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl821,014,050 - 21,437,930 (+)Ensembl
Rnor_6.0 Ensembl823,492,621 - 23,852,021 (+)Ensembl
RefSeq Acc Id: NM_001427726   ⟹   NP_001414655
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,290,008 - 29,713,889 (+)NCBI
RefSeq Acc Id: XM_039082270   ⟹   XP_038938198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,983 - 29,713,886 (+)NCBI
mRatBN7.2821,013,992 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_039082271   ⟹   XP_038938199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,984 - 29,713,886 (+)NCBI
mRatBN7.2821,013,993 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_039082272   ⟹   XP_038938200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,983 - 29,713,886 (+)NCBI
mRatBN7.2821,013,992 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_039082277   ⟹   XP_038938205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,983 - 29,713,886 (+)NCBI
mRatBN7.2821,013,992 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_039082279   ⟹   XP_038938207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,982 - 29,713,886 (+)NCBI
mRatBN7.2821,013,991 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_039082280   ⟹   XP_038938208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,290,339 - 29,713,886 (+)NCBI
mRatBN7.2821,014,366 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_039082282   ⟹   XP_038938210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,288,846 - 29,713,886 (+)NCBI
mRatBN7.2821,014,001 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_039082284   ⟹   XP_038938212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,288,846 - 29,713,886 (+)NCBI
mRatBN7.2821,014,007 - 21,437,934 (+)NCBI
RefSeq Acc Id: XM_063265354   ⟹   XP_063121424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,983 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265355   ⟹   XP_063121425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,983 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265356   ⟹   XP_063121426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,983 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265357   ⟹   XP_063121427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,983 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265358   ⟹   XP_063121428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,988 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265359   ⟹   XP_063121429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,992 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265360   ⟹   XP_063121430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,992 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265361   ⟹   XP_063121431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,992 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265362   ⟹   XP_063121432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,288,846 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265363   ⟹   XP_063121433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,995 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265364   ⟹   XP_063121434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,991 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265365   ⟹   XP_063121435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,991 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265366   ⟹   XP_063121436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,995 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265367   ⟹   XP_063121437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,992 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265368   ⟹   XP_063121438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,977 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265369   ⟹   XP_063121439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,995 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265370   ⟹   XP_063121440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,995 - 29,713,886 (+)NCBI
RefSeq Acc Id: XM_063265371   ⟹   XP_063121441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,289,991 - 29,713,886 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414655 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938199 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938200 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938212 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121424 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121425 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121426 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121427 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121428 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121429 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121430 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121431 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121432 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121433 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121434 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121435 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121436 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121437 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121438 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121439 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121440 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121441 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78211 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020481.8
  ENSRNOP00000076036
  ENSRNOP00000076036.2
  ENSRNOP00000076062
  ENSRNOP00000076062.2
RefSeq Acc Id: ENSRNOP00000076036   ⟸   ENSRNOT00000092845
RefSeq Acc Id: ENSRNOP00000020481   ⟸   ENSRNOT00000020481
RefSeq Acc Id: ENSRNOP00000076062   ⟸   ENSRNOT00000093071
RefSeq Acc Id: XP_038938207   ⟸   XM_039082279
- Peptide Label: isoform X1
- UniProtKB: A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938200   ⟸   XM_039082272
- Peptide Label: isoform X1
- UniProtKB: A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938205   ⟸   XM_039082277
- Peptide Label: isoform X1
- UniProtKB: A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938198   ⟸   XM_039082270
- Peptide Label: isoform X1
- UniProtKB: A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938199   ⟸   XM_039082271
- Peptide Label: isoform X1
- UniProtKB: A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938210   ⟸   XM_039082282
- Peptide Label: isoform X3
- UniProtKB: A0A1B0GWY0 (UniProtKB/TrEMBL),   A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938212   ⟸   XM_039082284
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL),   A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938208   ⟸   XM_039082280
- Peptide Label: isoform X1
- UniProtKB: A6JP05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121432   ⟸   XM_063265362
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121438   ⟸   XM_063265368
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121424   ⟸   XM_063265354
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063121427   ⟸   XM_063265357
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063121425   ⟸   XM_063265355
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063121426   ⟸   XM_063265356
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063121428   ⟸   XM_063265358
- Peptide Label: isoform X2
- UniProtKB: F1M285 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121435   ⟸   XM_063265365
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121441   ⟸   XM_063265371
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121434   ⟸   XM_063265364
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121431   ⟸   XM_063265361
- Peptide Label: isoform X3
- UniProtKB: A0A1B0GWY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121429   ⟸   XM_063265359
- Peptide Label: isoform X3
- UniProtKB: A0A1B0GWY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121437   ⟸   XM_063265367
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121430   ⟸   XM_063265360
- Peptide Label: isoform X3
- UniProtKB: A0A1B0GWY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121440   ⟸   XM_063265370
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121436   ⟸   XM_063265366
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121433   ⟸   XM_063265363
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121439   ⟸   XM_063265369
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414655   ⟸   NM_001427726
- UniProtKB: A0A1B0GWY0 (UniProtKB/TrEMBL)
Protein Domains
PTHB1 C-terminal   PTHB1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M285-F1-model_v2 AlphaFold F1M285 1-724 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695814
Promoter ID:EPDNEW_R6333
Type:multiple initiation site
Name:Bbs9_1
Description:Bardet-Biedl syndrome 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0823,492,628 - 23,492,688EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308472 AgrOrtholog
BioCyc Gene G2FUF-31374 BioCyc
Ensembl Genes ENSRNOG00000015189 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000056108 Ensembl
Ensembl Transcript ENSRNOT00000020481.8 UniProtKB/TrEMBL
  ENSRNOT00000092845.2 UniProtKB/TrEMBL
  ENSRNOT00000093071.2 UniProtKB/TrEMBL
InterPro PHTB1_C_dom UniProtKB/TrEMBL
  PHTB1_N_dom UniProtKB/TrEMBL
  PTHB1 UniProtKB/TrEMBL
NCBI Gene 315484 ENTREZGENE
PANTHER PROTEIN PTHB1 UniProtKB/TrEMBL
  PTHR20991 UniProtKB/TrEMBL
Pfam PHTB1_C UniProtKB/TrEMBL
  PHTB1_N UniProtKB/TrEMBL
PhenoGen Bbs9 PhenoGen
RatGTEx ENSRNOG00000015189 RatGTEx
  ENSRNOG00000056108 RatGTEx
UniProt A0A1B0GWV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GWY0 ENTREZGENE, UniProtKB/TrEMBL
  A6JP05 ENTREZGENE, UniProtKB/TrEMBL
  F1M285 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Bbs9  Bardet-Biedl syndrome 9  RGD1308472_predicted  similar to E130103I17Rik protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1308472_predicted  similar to E130103I17Rik protein (predicted)  LOC315484_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315484_predicted  similar to E130103I17Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL