Rcbtb1 (RCC1 and BTB domain containing protein 1)

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Gene: Rcbtb1 (RCC1 and BTB domain containing protein 1) Rattus norvegicus

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Symbol:

Rcbtb1

Name:

RCC1 and BTB domain containing protein 1

RGD ID:

1308467

Description:

Predicted to be active in cytoplasm. Orthologous to human RCBTB1 (RCC1 and BTB domain containing protein 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC361050; RCC1 and BTB domain-containing protein 1; regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	37,430,453 - 37,477,920 (+)	NCBI		GRCr8
mRatBN7.2	15	33,319,586 - 33,362,421 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	33,319,586 - 33,365,302 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	35,310,617 - 35,354,224 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	36,461,276 - 36,504,898 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	34,719,682 - 34,762,068 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	39,622,572 - 39,665,335 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	39,638,510 - 39,669,473 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	43,439,885 - 43,483,414 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	38,291,075 - 38,371,308 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	38,306,774 - 38,385,804 (+)	NCBI
Celera	15	33,014,669 - 33,057,028 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 13q14 deletion syndrome (ISO)

Coats disease (ISO)

intellectual disability (ISO)

RETINAL DYSTROPHY WITH OR WITHOUT EXTRAOCULAR ANOMALIES (ISO)

retinal telangiectasia (ISO)

retinitis pigmentosa (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17beta-estradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP)

cadmium dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diethylstilbestrol (EXP)

ethanol (ISO)

fluoxetine (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

mitoxantrone (ISO)

N-nitrosodiethylamine (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

triphenyl phosphate (EXP)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22871113

Genomics

Comparative Map Data

Rcbtb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	37,430,453 - 37,477,920 (+)	NCBI		GRCr8
mRatBN7.2	15	33,319,586 - 33,362,421 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	33,319,586 - 33,365,302 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	35,310,617 - 35,354,224 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	36,461,276 - 36,504,898 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	34,719,682 - 34,762,068 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	39,622,572 - 39,665,335 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	39,638,510 - 39,669,473 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	43,439,885 - 43,483,414 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	38,291,075 - 38,371,308 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	38,306,774 - 38,385,804 (+)	NCBI
Celera	15	33,014,669 - 33,057,028 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

RCBTB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	49,531,946 - 49,585,558 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	49,531,946 - 49,585,558 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	50,106,082 - 50,159,694 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	49,004,083 - 49,057,720 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	49,004,082 - 49,057,720	NCBI
Celera	13	31,161,034 - 31,214,651 (-)	NCBI		Celera
Cytogenetic Map	13	q14.2	NCBI
HuRef	13	30,899,391 - 30,952,987 (-)	NCBI		HuRef
CHM1_1	13	50,073,621 - 50,127,254 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	48,750,484 - 48,804,060 (-)	NCBI		T2T-CHM13v2.0

Rcbtb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	59,438,471 - 59,474,716 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	59,438,658 - 59,474,714 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	59,201,018 - 59,237,267 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	59,201,209 - 59,237,265 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	59,820,065 - 59,856,102 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	58,155,352 - 58,191,375 (+)	NCBI		MGSCv36	mm8
Celera	14	57,005,111 - 57,041,136 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	31.47	NCBI

Rcbtb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	2,976,283 - 3,080,405 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	2,976,283 - 3,080,665 (-)	NCBI	ChiLan1.0	ChiLan1.0

RCBTB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	50,972,898 - 51,028,372 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	49,624,567 - 49,678,910 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	30,673,230 - 30,727,480 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	49,422,283 - 49,475,551 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	49,422,283 - 49,475,857 (-)	Ensembl	panpan1.1		panPan2

RCBTB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	2,183,089 - 2,230,748 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	2,198,185 - 2,229,485 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	2,211,982 - 2,260,039 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	2,173,787 - 2,222,203 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	2,173,776 - 2,222,202 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	2,082,595 - 2,130,648 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	2,131,900 - 2,179,940 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	2,150,250 - 2,198,317 (+)	NCBI		UU_Cfam_GSD_1.0

Rcbtb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	159,124,744 - 159,165,954 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936565	2,608,792 - 2,650,604 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936565	2,608,788 - 2,649,992 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RCBTB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	18,114,767 - 18,197,747 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	18,132,013 - 18,197,759 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	18,446,178 - 18,512,529 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RCBTB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	27,451,687 - 27,505,866 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	27,451,182 - 27,506,013 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	16,378,639 - 16,432,914 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rcbtb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	5,097,982 - 5,147,011 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	5,097,274 - 5,147,014 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rcbtb1
142 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	163
Count of miRNA genes:	115
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000037800
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat

Markers in Region

D15Cebr1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	15	43,461,952 - 43,462,129	NCBI	Rnor5.0
RGSC_v3.4	15	38,349,852 - 38,350,048	UniSTS	RGSC3.4
Cytogenetic Map	15	p12	UniSTS

RH131300

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	33,362,174 - 33,362,357 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	39,665,536 - 39,665,718	NCBI	Rnor6.0
Rnor_5.0	15	43,483,615 - 43,483,797	UniSTS	Rnor5.0
RGSC_v3.4	15	38,371,509 - 38,371,691	UniSTS	RGSC3.4
Celera	15	33,057,229 - 33,057,411	UniSTS
Cytogenetic Map	15	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	18	78	199	137	57	137	7	3	249	89	112	39	3
Low	3	63	28	10		10	29	42		26	33		21
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY724518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037800 ⟹ ENSRNOP00000038352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	33,319,586 - 33,365,302 (+)	Ensembl
Rnor_6.0 Ensembl	15	39,638,510 - 39,663,499 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081373 ⟹ ENSRNOP00000068998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	33,344,913 - 33,356,047 (+)	Ensembl
Rnor_6.0 Ensembl	15	39,644,851 - 39,669,473 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120010 ⟹ ENSRNOP00000079053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	33,319,586 - 33,361,974 (+)	Ensembl

RefSeq Acc Id:

NM_001108380 ⟹ NP_001101850

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	37,435,093 - 37,477,473 (+)	NCBI
mRatBN7.2	15	33,319,586 - 33,361,974 (+)	NCBI
Rnor_6.0	15	39,622,572 - 39,665,335 (+)	NCBI
Rnor_5.0	15	43,439,885 - 43,483,414 (+)	NCBI
RGSC_v3.4	15	38,291,075 - 38,371,308 (+)	RGD
Celera	15	33,014,669 - 33,057,028 (+)	RGD

Sequence:

show sequence

GAGCCCATTAAGGCGGCGGCGCTGAGGGCTCAGGGCCTGGCCCGGAGGCCTGACAGGTAGAGCG
CTGCAGGGCGGAGGTGCGGCGAGCCGGGGAGCCGGGCGGGGCCTTGCTTGGCCGCTGCGAAGTC
CGCGCCCTCCCGAGGGCCGTGCGCACCAGGCGCGTTCGCGACCCTTCGGCGACGCGCACTCTGC
ACCCCCGGCGTTCTGTCCTGCGGGAACTTCACCCAGGTGTGCGGCGGCGAGCTGAGTAAATGGC
GTTGCCCGCGGCCTGCCTCTGAGGAAACTCGCTGCCGGTCCCACTGGAGAGGAACACCAAGCAC
GCAGCGGAGATGTCAGCTGATTTATAGGAGTCATCCAAAGCCACAGTCATGGTAGATGTAGGAA
AGTGGCCAATCTTCACTCTGCTCTCGCCCCAGGAAACTGGATCTATCAGGAAAGCATGTGTCTT
TGGAATCTCGGCCAGCGAGGCGATCTATGTCACTGACAGTGATGAGGTCTTCGTGTTTGGACTG
AACTATAGTAACTGTCTAGGAACTGGAGATAACCAGAGCACCCTGGTGCCCAAGAAACTAGAAG
CTTTGTGTGGAAAAAGGATCAAAAGCCTTAGTTATGGGAGTGGTCCCCATGTCCTCCTCAGCAC
TGAAGATGGAGTCGTCTATGCCTGGGGCCATAATGGATACAGCCAGCTGGGAAACGGGACCACC
AACCAAGGCATTGCCCCTATTCAAGTCTGCACTAATCTCTTGGTCAAACAAGTGGTTGAGGTAG
CTTGTGGTTCACATCATTCCATGGCTTTAGCAGCTGATGGAGAGTTATTTGCTTGGGGCTATAA
CAACTGTGGTCAGGTGGGATCAGGATCTACAGCAAATCAGCCAACTCCTCGGAAAGTTACCAAC
TGTTTACATACCAAGAAAGTGGTCAACATTGCCTGTGGTCAGACCTCATCCATGGCTGTTCTGG
ACAGTGGTGAGGTGTATGGCTGGGGCTACAATGGCAATGGACAGCTGGGCCTGGGAAACAACGG
CAACCAGTTGACCCCAGTGAGGGTGGCAGCCCTGCACGGCGTGTGTGTGAACCAGATCGTCTGC
GGTTATGCACATACACTAGCACTCACAGATGAGGGACTGCTCTATGCCTGGGGAGCTAACACAT
ATGGGCAGCTGGGAACTGGAAGCAAAAATAACCTGCTGAGCCCCACACAGATCATGGTGGAAAA
AGAAAGGGTTATAGAGATTGCAGCTTGTCACTCCACCCACACATCTGCTGCCAAGACGCAGGGC
GGGCATGTGTACATGTGGGGCCAGTGCCGGGGCCAGTCTGTAATCCTCCCGCACCTAACCCACT
TCTCCTGCACCGATGATGTATTTGCCTGTTTTGGCACCCCAGCTGTCTCATGGCGCCTCCTGTC
TGTAGAGCATGAAGACTTTTTAACAGTTGCAGAATCACTGAAGAAAGAATTTGATAGTCCAGAA
ACTGCAGATCTGAAGTTTCGAATTGATGGGAAATATATTCACGTCCATAAAGCTGTTTTGAAGA
TCAGGTGCGAGCACTTCCGGTCCATGTTTCAGTCCTATTGGAATGAGGACATGAAGGAAGTGAT
AGAGATAGACCAGTTCTCTTACCCTGTGTACCGTGCCTTTCTCCAGTACCTCTACACAGACACA
GTGGACCTGCCACCTGAGGACGCTATAGGCCTTTTGGACTTGGCAACATCGTACTGTGAGAACA
GACTGAAGAGGCTCTGTCAGCACATCATCAAGCGAGGAATCACTGTGGAGAATGCTTTCTCATT
GTTCTCTGCTGCAGTCAGATATGACGCAGAGGATTTAGAAGAATTCTGCTTTAAGTTTTGCATC
AATCATTTGACAGAAGTTACCCAGACTGCTGCGTTCTGGCAAATGGATGGTCCCCTGCTAAAGG
AGTTCATTGCTAAAGCCAGTAAATGTGGAGCCTTTAAGAATTGAGGCCAAGGCTGCTGGGCTGG
GTGTGGGCGCTCTGAGGCGCTGGGTGAGGTGACTCTGCAGGTAAAGCCCCGACACAGTGTGCTG
TAGGAATGCATGAAGGACATTGGTTCTTGTGAGTCTCTTTTTACATCGCTTGTTTGTAGATATG
TACATTTTACATGTGATTGTTCTTACGTTTGATGAACATTGGGAAAGGATGGCAGTTTACATGC
TTTTGTTCTTTTAACTTTATGAAAGGGTGTTTTGGACTTGGGCCACAGGCCCTTCCACACCGTC
TGTGGAGGAGGCCCTGTCGGGTGCTTCCTGAGCGCTGCTCACACTCACCAACCTCCTGTGGGGG
CATCAGCACTGGGGGGGTCATAGTGGGGGTCATAAAGAATATTCTATACACATTCAACCACCTA
GACAGTCAAGGAATGGTTAGGTTTCTGAGATGCTCTTAATGCATAGGCATGTAGGGCTGTAGAT
GGCTCAGCAGGTAAAGGCTCTGTCACTAAGCATGAGGACTTAACCTCATGCCCAGGACACACAT
GGTGGAGAGAGACAGCGGACTTACAGTTGTCCTCTCACTGTTGGAGGTGTACCATGTCTACACA
CAGACACCACAAAGAGGAAGAAGAAGAAAGAATTAGTACCTATAGGGAAGTAACGTGAAAAGCT
GGTGGTAAAGAAGCTTTTTTCAGGAAGGAAGAAGGTGACAGAAATTAGAGTCTCCCCTGATTGC
CCAACAGTGCTTCACTAGGGTGCAATGGCAAACAGGGTGCACACTATCGTACCCTTTATAATTA
CTCACAAACACACTCTGCGTGGCTGTTCTTTTCTGACTTGATGTGATTGCTAAAGCCACCCCTC
GTACAGGACGCCATAGAATGCTCATAGTTTTAGGTGGTGGGAGGAGCCTAGGCCAAATTCCATC
AAAACCTAATTGAAGCTTCACCTTCACCTCTCTACTTTCGGCTTTTCCTTTCTTTAATTGTGTT
AGGAATACTTTTGTCATACACTAAGCTAGGGCTCCATAGCAATTCTTTTCCTGAAAGGTCATTT
GTCAAAGATTGTATCAGGGTGGATGGTGACTGAGGCACCAAAGCCAGGCAGGTGTGATGACAGG
CAGGATGAATACGAACTACAGCTTAAAGGCCTTCTTCCTGATCGTGCCCCTGCCTCCTCAGTGA
CACTTTCCTGACCAGGATGGAGTGGACATTACGTGATTTGCTGTGGTAGATCATCTGTAGAACC
ACAGTTCTGTGACTTAGGGCCTCGAAGCAGTATCTTTAGGAAAGTCACCGGTGGTCTCACTTGA
AAAACTTCTCCATGGGAAAAGCACAAATCACAGCTGCAAATCCACATCGACAGGTAGTTTACCT
GACAGACATACGGACTTCCTGATCCCGCTGAACAGCTAGAGAGTGAGTGTGAGAGTGTGCGTGT
GCGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAAAAGTCCTTTAA
AAGGGGTTTGCGTATTTTTTTAATGCAATCTTTTTATTTTTCTACTTGGTTTTGGTTATAATCA
TATAAACAAAAAACTTCTTGAAATTAATGTTTTCTTCTGATGTAATAATGGAAGGCAGAGAAGT
CACATTTCTTAAAAGAGCCCAACTGTATCCTTGAAGTTACTGGAACCA

hide sequence

RefSeq Acc Id:

XM_039093498 ⟹ XP_038949426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	37,430,453 - 37,477,920 (+)	NCBI
mRatBN7.2	15	33,319,589 - 33,362,421 (+)	NCBI

RefSeq Acc Id:

XM_039093499 ⟹ XP_038949427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	37,430,453 - 37,477,920 (+)	NCBI
mRatBN7.2	15	33,319,709 - 33,362,421 (+)	NCBI

RefSeq Acc Id:

XM_039093500 ⟹ XP_038949428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	37,430,453 - 37,473,518 (+)	NCBI
mRatBN7.2	15	33,319,709 - 33,355,822 (+)	NCBI

RefSeq Acc Id:

XR_010057839

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	37,430,453 - 37,473,518 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101850	(Get FASTA)	NCBI Sequence Viewer
	XP_038949426	(Get FASTA)	NCBI Sequence Viewer
	XP_038949427	(Get FASTA)	NCBI Sequence Viewer
	XP_038949428	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM14377	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038352.6
	ENSRNOP00000068998.2
	ENSRNOP00000079053.1

RefSeq Acc Id:

NP_001101850 ⟸ NM_001108380

- UniProtKB:

A0A8I5ZM64 (UniProtKB/TrEMBL), A6KHE8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVDVGKWPIFTLLSPQETGSIRKACVFGISASEAIYVTDSDEVFVFGLNYSNCLGTGDNQSTLV
PKKLEALCGKRIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLVK
QVVEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKKVVNIACGQTS
SMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHGVCVNQIVCGYAHTLALTDEGLLYA
WGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVIL
PHLTHFSCTDDVFACFGTPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFRIDGKYIHVH
KAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPVYRAFLQYLYTDTVDLPPEDAIGLLDLAT
SYCENRLKRLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAFWQMD
GPLLKEFIAKASKCGAFKN

hide sequence

Ensembl Acc Id:

ENSRNOP00000068998 ⟸ ENSRNOT00000081373

Ensembl Acc Id:

ENSRNOP00000038352 ⟸ ENSRNOT00000037800

RefSeq Acc Id:	XP_038949426 ⟸ XM_039093498
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZM64 (UniProtKB/TrEMBL), A6KHE8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949427 ⟸ XM_039093499
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZM64 (UniProtKB/TrEMBL), A6KHE8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949428 ⟸ XM_039093500
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000079053 ⟸ ENSRNOT00000120010

Protein Domains

BTB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AD40-F1-model_v2	AlphaFold	D4AD40	1-530	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308467	AgrOrtholog
BioCyc Gene	G2FUF-13562	BioCyc
Ensembl Genes	ENSRNOG00000021712	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037800.7	UniProtKB/TrEMBL
	ENSRNOT00000081373.2	UniProtKB/TrEMBL
	ENSRNOT00000120010.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.30	UniProtKB/TrEMBL
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	RCBTB1_BTB_POZ	UniProtKB/TrEMBL
	Reg_chr_condens	UniProtKB/TrEMBL
	Reg_csome_cond/b-lactamase_inh	UniProtKB/TrEMBL
	Signaling_Regulatory_Domain	UniProtKB/TrEMBL
KEGG Report	rno:361050	UniProtKB/TrEMBL
NCBI Gene	361050	ENTREZGENE
PANTHER	BTB_POZ DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	BTK-BINDING PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	RCC1	UniProtKB/TrEMBL
PhenoGen	Rcbtb1	PhenoGen
PRINTS	RCCNDNSATION	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
	RCC1_2	UniProtKB/TrEMBL
	RCC1_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021712	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	RCC1/BLIP-II	UniProtKB/TrEMBL
UniProt	A0A0G2JU79_RAT	UniProtKB/TrEMBL
	A0A8I5ZM64	ENTREZGENE, UniProtKB/TrEMBL
	A6KHE8	ENTREZGENE, UniProtKB/TrEMBL
	D4AD40_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Rcbtb1	RCC1 and BTB domain containing protein 1	Rcbtb1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Rcbtb1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	Rcbtb1_predicted	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rcbtb1_predicted	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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