Rcbtb1 (RCC1 and BTB domain containing protein 1)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Rcbtb1 (RCC1 and BTB domain containing protein 1) Rattus norvegicus

Analyze

Symbol:

Rcbtb1

Name:

RCC1 and BTB domain containing protein 1

RGD ID:

1308467

Description:

Predicted to localize to cytoplasm. Orthologous to human RCBTB1 (RCC1 and BTB domain containing protein 1); INTERACTS WITH (+)-schisandrin B; acrylamide; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC361050; RCC1 and BTB domain-containing protein 1; regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1

Orthologs:

Homo sapiens (human) : RCBTB1 (RCC1 and BTB domain containing protein 1) HGNC Alliance
Mus musculus (house mouse) : Rcbtb1 (regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rcbtb1 (RCC1 and BTB domain containing protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : RCBTB1 (RCC1 and BTB domain containing protein 1)
Canis lupus familiaris (dog) : RCBTB1 (RCC1 and BTB domain containing protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rcbtb1 (RCC1 and BTB domain containing protein 1)
Sus scrofa (pig) : RCBTB1 (RCC1 and BTB domain containing protein 1)
Chlorocebus sabaeus (African green monkey) : RCBTB1 (RCC1 and BTB domain containing protein 1)
Heterocephalus glaber (naked mole-rat) : Rcbtb1 (RCC1 and BTB domain containing protein 1)

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	15	39,622,572 - 39,665,335 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	39,638,510 - 39,669,473 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	43,439,885 - 43,483,414 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	38,291,075 - 38,371,308 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	15	38,306,774 - 38,385,804 (+)	NCBI
Celera	15	33,014,669 - 33,057,028 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 13q Deletion Syndrome (ISO)

chromosome 13q14 deletion syndrome (ISO)

Coats disease (ISO)

intellectual disability (ISO)

RETINAL DYSTROPHY WITH OR WITHOUT EXTRAOCULAR ANOMALIES (ISO)

retinitis pigmentosa (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diethylstilbestrol (EXP)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

mitoxantrone (ISO)

N-nitrosodiethylamine (EXP)

paracetamol (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

sodium fluoride (ISO)

tetrachloromethane (EXP)

triphenyl phosphate (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated


1.	MGD data from the GO Consortium
2.	OMIM Disease Annotation Pipeline
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22871113

Genomics

Comparative Map Data

Rcbtb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	15	39,622,572 - 39,665,335 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	39,638,510 - 39,669,473 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	43,439,885 - 43,483,414 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	38,291,075 - 38,371,308 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	15	38,306,774 - 38,385,804 (+)	NCBI
Celera	15	33,014,669 - 33,057,028 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

RCBTB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	13	49,531,946 - 49,585,558 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	13	49,531,944 - 49,585,587 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	13	50,106,082 - 50,159,742 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	49,004,083 - 49,057,720 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	13	49,004,082 - 49,057,720	NCBI
Celera	13	31,161,034 - 31,214,651 (-)	NCBI
Cytogenetic Map	13	q14.2	NCBI
HuRef	13	30,899,391 - 30,952,987 (-)	NCBI		HuRef
CHM1_1	13	50,073,621 - 50,127,254 (-)	NCBI		CHM1_1

Rcbtb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	59,438,471 - 59,474,716 (+)	NCBI
GRCm38	14	59,201,018 - 59,237,267 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	59,201,209 - 59,237,265 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	59,820,065 - 59,856,102 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	14	58,155,352 - 58,191,375 (+)	NCBI			mm8
Celera	14	57,005,111 - 57,041,136 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI

Rcbtb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	2,976,283 - 3,080,405 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	2,976,283 - 3,080,665 (-)	NCBI	ChiLan1.0	ChiLan1.0

RCBTB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	13	49,422,283 - 49,475,551 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	49,422,283 - 49,475,857 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	13	30,673,230 - 30,727,480 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

RCBTB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	22	2,198,185 - 2,229,485 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	22	2,183,089 - 2,230,748 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rcbtb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936565	2,608,788 - 2,649,992 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RCBTB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	18,040,110 - 18,197,751 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	18,132,013 - 18,197,759 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	18,446,178 - 18,512,529 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RCBTB1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	3	27,451,182 - 27,506,013 (-)	Ensembl
ChlSab1.1	3	27,451,687 - 27,505,866 (-)	NCBI

Rcbtb1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624748	5,097,274 - 5,147,014 (+)	NCBI

Position Markers

D15Cebr1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	15	43,461,952 - 43,462,129	NCBI	Rnor5.0
RGSC_v3.4	15	38,349,852 - 38,350,048	UniSTS	RGSC3.4
Cytogenetic Map	15	p12	UniSTS

RH131300

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	15	39,665,536 - 39,665,718	NCBI	Rnor6.0
Rnor_5.0	15	43,483,615 - 43,483,797	UniSTS	Rnor5.0
RGSC_v3.4	15	38,371,509 - 38,371,691	UniSTS	RGSC3.4
Celera	15	33,057,229 - 33,057,411	UniSTS
Cytogenetic Map	15	p12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	42844179	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	43521446	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	62301382	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2327877	53535766	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	3881131	48881131	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	10719191	55719191	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	15492360	72568189	Rat
9590272	Scort14	Serum corticosterone level QTL 14	2.78	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	16980907	61980907	Rat
8694427	Bw163	Body weight QTL 163	4.82	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	15	16980907	61980907	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	17249641	62249641	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	17249641	62249641	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	17249641	62249641	Rat
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	18093208	81255430	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	18513913	88036354	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	21021342	41082727	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	21021342	52831189	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	23778969	46825072	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	26381041	106550657	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	26381041	106550657	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	26381041	106550657	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28709741	73709741	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	33219101	89640841	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	33219101	89640841	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	33219101	89640841	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	33219101	89640841	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	33219101	89640841	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	39480797	62596410	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	163
Count of miRNA genes:	115
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000037800
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	55	39	19	39	1	1	74	28	36	11	1
Low	1	17	2	2		2	7	10		7	5		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07018100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07018101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07018102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01083225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01083226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01083227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01083228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01083229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY724518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000037800 ⟹ ENSRNOP00000038352

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	15	39,638,510 - 39,663,499 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081373 ⟹ ENSRNOP00000068998

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	15	39,644,851 - 39,669,473 (+)	Ensembl

RefSeq Acc Id:

NM_001108380 ⟹ NP_001101850

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	39,622,572 - 39,665,335 (+)	NCBI
Rnor_5.0	15	43,439,885 - 43,483,414 (+)	NCBI
RGSC_v3.4	15	38,291,075 - 38,371,308 (+)	RGD
Celera	15	33,014,669 - 33,057,028 (+)	RGD

Sequence:

show sequence

GAGCCCATTAAGGCGGCGGCGCTGAGGGCTCAGGGCCTGGCCCGGAGGCCTGACAGGTAGAGCG
CTGCAGGGCGGAGGTGCGGCGAGCCGGGGAGCCGGGCGGGGCCTTGCTTGGCCGCTGCGAAGTC
CGCGCCCTCCCGAGGGCCGTGCGCACCAGGCGCGTTCGCGACCCTTCGGCGACGCGCACTCTGC
ACCCCCGGCGTTCTGTCCTGCGGGAACTTCACCCAGGTGTGCGGCGGCGAGCTGAGTAAATGGC
GTTGCCCGCGGCCTGCCTCTGAGGAAACTCGCTGCCGGTCCCACTGGAGAGGAACACCAAGCAC
GCAGCGGAGATGTCAGCTGATTTATAGGAGTCATCCAAAGCCACAGTCATGGTAGATGTAGGAA
AGTGGCCAATCTTCACTCTGCTCTCGCCCCAGGAAACTGGATCTATCAGGAAAGCATGTGTCTT
TGGAATCTCGGCCAGCGAGGCGATCTATGTCACTGACAGTGATGAGGTCTTCGTGTTTGGACTG
AACTATAGTAACTGTCTAGGAACTGGAGATAACCAGAGCACCCTGGTGCCCAAGAAACTAGAAG
CTTTGTGTGGAAAAAGGATCAAAAGCCTTAGTTATGGGAGTGGTCCCCATGTCCTCCTCAGCAC
TGAAGATGGAGTCGTCTATGCCTGGGGCCATAATGGATACAGCCAGCTGGGAAACGGGACCACC
AACCAAGGCATTGCCCCTATTCAAGTCTGCACTAATCTCTTGGTCAAACAAGTGGTTGAGGTAG
CTTGTGGTTCACATCATTCCATGGCTTTAGCAGCTGATGGAGAGTTATTTGCTTGGGGCTATAA
CAACTGTGGTCAGGTGGGATCAGGATCTACAGCAAATCAGCCAACTCCTCGGAAAGTTACCAAC
TGTTTACATACCAAGAAAGTGGTCAACATTGCCTGTGGTCAGACCTCATCCATGGCTGTTCTGG
ACAGTGGTGAGGTGTATGGCTGGGGCTACAATGGCAATGGACAGCTGGGCCTGGGAAACAACGG
CAACCAGTTGACCCCAGTGAGGGTGGCAGCCCTGCACGGCGTGTGTGTGAACCAGATCGTCTGC
GGTTATGCACATACACTAGCACTCACAGATGAGGGACTGCTCTATGCCTGGGGAGCTAACACAT
ATGGGCAGCTGGGAACTGGAAGCAAAAATAACCTGCTGAGCCCCACACAGATCATGGTGGAAAA
AGAAAGGGTTATAGAGATTGCAGCTTGTCACTCCACCCACACATCTGCTGCCAAGACGCAGGGC
GGGCATGTGTACATGTGGGGCCAGTGCCGGGGCCAGTCTGTAATCCTCCCGCACCTAACCCACT
TCTCCTGCACCGATGATGTATTTGCCTGTTTTGGCACCCCAGCTGTCTCATGGCGCCTCCTGTC
TGTAGAGCATGAAGACTTTTTAACAGTTGCAGAATCACTGAAGAAAGAATTTGATAGTCCAGAA
ACTGCAGATCTGAAGTTTCGAATTGATGGGAAATATATTCACGTCCATAAAGCTGTTTTGAAGA
TCAGGTGCGAGCACTTCCGGTCCATGTTTCAGTCCTATTGGAATGAGGACATGAAGGAAGTGAT
AGAGATAGACCAGTTCTCTTACCCTGTGTACCGTGCCTTTCTCCAGTACCTCTACACAGACACA
GTGGACCTGCCACCTGAGGACGCTATAGGCCTTTTGGACTTGGCAACATCGTACTGTGAGAACA
GACTGAAGAGGCTCTGTCAGCACATCATCAAGCGAGGAATCACTGTGGAGAATGCTTTCTCATT
GTTCTCTGCTGCAGTCAGATATGACGCAGAGGATTTAGAAGAATTCTGCTTTAAGTTTTGCATC
AATCATTTGACAGAAGTTACCCAGACTGCTGCGTTCTGGCAAATGGATGGTCCCCTGCTAAAGG
AGTTCATTGCTAAAGCCAGTAAATGTGGAGCCTTTAAGAATTGAGGCCAAGGCTGCTGGGCTGG
GTGTGGGCGCTCTGAGGCGCTGGGTGAGGTGACTCTGCAGGTAAAGCCCCGACACAGTGTGCTG
TAGGAATGCATGAAGGACATTGGTTCTTGTGAGTCTCTTTTTACATCGCTTGTTTGTAGATATG
TACATTTTACATGTGATTGTTCTTACGTTTGATGAACATTGGGAAAGGATGGCAGTTTACATGC
TTTTGTTCTTTTAACTTTATGAAAGGGTGTTTTGGACTTGGGCCACAGGCCCTTCCACACCGTC
TGTGGAGGAGGCCCTGTCGGGTGCTTCCTGAGCGCTGCTCACACTCACCAACCTCCTGTGGGGG
CATCAGCACTGGGGGGGTCATAGTGGGGGTCATAAAGAATATTCTATACACATTCAACCACCTA
GACAGTCAAGGAATGGTTAGGTTTCTGAGATGCTCTTAATGCATAGGCATGTAGGGCTGTAGAT
GGCTCAGCAGGTAAAGGCTCTGTCACTAAGCATGAGGACTTAACCTCATGCCCAGGACACACAT
GGTGGAGAGAGACAGCGGACTTACAGTTGTCCTCTCACTGTTGGAGGTGTACCATGTCTACACA
CAGACACCACAAAGAGGAAGAAGAAGAAAGAATTAGTACCTATAGGGAAGTAACGTGAAAAGCT
GGTGGTAAAGAAGCTTTTTTCAGGAAGGAAGAAGGTGACAGAAATTAGAGTCTCCCCTGATTGC
CCAACAGTGCTTCACTAGGGTGCAATGGCAAACAGGGTGCACACTATCGTACCCTTTATAATTA
CTCACAAACACACTCTGCGTGGCTGTTCTTTTCTGACTTGATGTGATTGCTAAAGCCACCCCTC
GTACAGGACGCCATAGAATGCTCATAGTTTTAGGTGGTGGGAGGAGCCTAGGCCAAATTCCATC
AAAACCTAATTGAAGCTTCACCTTCACCTCTCTACTTTCGGCTTTTCCTTTCTTTAATTGTGTT
AGGAATACTTTTGTCATACACTAAGCTAGGGCTCCATAGCAATTCTTTTCCTGAAAGGTCATTT
GTCAAAGATTGTATCAGGGTGGATGGTGACTGAGGCACCAAAGCCAGGCAGGTGTGATGACAGG
CAGGATGAATACGAACTACAGCTTAAAGGCCTTCTTCCTGATCGTGCCCCTGCCTCCTCAGTGA
CACTTTCCTGACCAGGATGGAGTGGACATTACGTGATTTGCTGTGGTAGATCATCTGTAGAACC
ACAGTTCTGTGACTTAGGGCCTCGAAGCAGTATCTTTAGGAAAGTCACCGGTGGTCTCACTTGA
AAAACTTCTCCATGGGAAAAGCACAAATCACAGCTGCAAATCCACATCGACAGGTAGTTTACCT
GACAGACATACGGACTTCCTGATCCCGCTGAACAGCTAGAGAGTGAGTGTGAGAGTGTGCGTGT
GCGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAAAAGTCCTTTAA
AAGGGGTTTGCGTATTTTTTTAATGCAATCTTTTTATTTTTCTACTTGGTTTTGGTTATAATCA
TATAAACAAAAAACTTCTTGAAATTAATGTTTTCTTCTGATGTAATAATGGAAGGCAGAGAAGT
CACATTTCTTAAAAGAGCCCAACTGTATCCTTGAAGTTACTGGAACCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101850	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM14377	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101850 ⟸ NM_001108380

- Sequence:

show sequence

MVDVGKWPIFTLLSPQETGSIRKACVFGISASEAIYVTDSDEVFVFGLNYSNCLGTGDNQSTLV
PKKLEALCGKRIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLVK
QVVEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKKVVNIACGQTS
SMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHGVCVNQIVCGYAHTLALTDEGLLYA
WGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVIL
PHLTHFSCTDDVFACFGTPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFRIDGKYIHVH
KAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPVYRAFLQYLYTDTVDLPPEDAIGLLDLAT
SYCENRLKRLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAFWQMD
GPLLKEFIAKASKCGAFKN

hide sequence

RefSeq Acc Id:

ENSRNOP00000068998 ⟸ ENSRNOT00000081373

RefSeq Acc Id:

ENSRNOP00000038352 ⟸ ENSRNOT00000037800

Protein Domains

BTB

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308467	AgrOrtholog
Ensembl Genes	ENSRNOG00000021712	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000038352	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000068998	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037800	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000081373	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.30	UniProtKB/TrEMBL
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Reg_chr_condens	UniProtKB/TrEMBL
	Reg_csome_cond/b-lactamase_inh	UniProtKB/TrEMBL
NCBI Gene	361050	ENTREZGENE
Pfam	BTB	UniProtKB/TrEMBL
	RCC1	UniProtKB/TrEMBL
PhenoGen	Rcbtb1	PhenoGen
PRINTS	RCCNDNSATION	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
	RCC1_2	UniProtKB/TrEMBL
	RCC1_3	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	RCC1/BLIP-II	UniProtKB/TrEMBL
UniGene	Rn.229110	ENTREZGENE
UniProt	A0A0G2JU79_RAT	UniProtKB/TrEMBL
	D4AD40_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Rcbtb1	RCC1 and BTB domain containing protein 1	Rcbtb1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Rcbtb1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	Rcbtb1_predicted	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rcbtb1_predicted	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM