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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rcbtb1 | Rat | RETINAL DYSTROPHY WITH OR WITHOUT EXTRAOCULAR ANOMALIES | | ISO | RCBTB1 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rcbtb1 | Rat | RETINAL DYSTROPHY WITH OR WITHOUT EXTRAOCULAR ANOMALIES | | ISO | RCBTB1 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Rcbtb1 (Rattus norvegicus - Norway rat) |
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RCBTB1 (Homo sapiens - human) |
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Rcbtb1 (Mus musculus - house mouse) |
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Rcbtb1 (Chinchilla lanigera - long-tailed chinchilla) |
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RCBTB1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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RCBTB1 (Canis lupus familiaris - dog) |
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Rcbtb1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RCBTB1 (Sus scrofa - pig) |
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RCBTB1 (Chlorocebus sabaeus - green monkey) |
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Rcbtb1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Rcbtb1
143 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
D15Cebr1 |
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RH131300 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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16 | 12 | 67 | 165 | 91 | 90 | 59 | 92 | 59 | 6 | 356 | 192 | 11 | 144 | 81 | 92 | 31 | 17 | 17 |
RefSeq Transcripts | NM_001108380 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039093498 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039093499 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039093500 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010057839 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AY724518 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474049 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000015 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000037800 ⟹ ENSRNOP00000038352 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000081373 ⟹ ENSRNOP00000068998 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000120010 ⟹ ENSRNOP00000079053 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000146787 ⟹ ENSRNOP00000105754 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001108380 ⟹ NP_001101850 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039093498 ⟹ XP_038949426 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039093499 ⟹ XP_038949427 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039093500 ⟹ XP_038949428 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XR_010057839 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001101850 | (Get FASTA) | NCBI Sequence Viewer |
XP_038949426 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038949427 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038949428 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM14377 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000038352.6 | ||
ENSRNOP00000068998.2 | |||
ENSRNOP00000079053 | |||
ENSRNOP00000079053.1 | |||
ENSRNOP00000105754 |
RefSeq Acc Id: | NP_001101850 ⟸ NM_001108380 |
- UniProtKB: | A0A8I5ZM64 (UniProtKB/TrEMBL), A6KHE8 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000068998 ⟸ ENSRNOT00000081373 |
Ensembl Acc Id: | ENSRNOP00000038352 ⟸ ENSRNOT00000037800 |
RefSeq Acc Id: | XP_038949426 ⟸ XM_039093498 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I5ZM64 (UniProtKB/TrEMBL), A6KHE8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038949427 ⟸ XM_039093499 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I5ZM64 (UniProtKB/TrEMBL), A6KHE8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038949428 ⟸ XM_039093500 |
- Peptide Label: | isoform X2 |
Ensembl Acc Id: | ENSRNOP00000079053 ⟸ ENSRNOT00000120010 |
Ensembl Acc Id: | ENSRNOP00000105754 ⟸ ENSRNOT00000146787 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D4AD40-F1-model_v2 | AlphaFold | D4AD40 | 1-530 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1308467 | AgrOrtholog |
BioCyc Gene | G2FUF-13562 | BioCyc |
Ensembl Genes | ENSRNOG00000021712 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000037800.7 | UniProtKB/TrEMBL |
ENSRNOT00000081373.2 | UniProtKB/TrEMBL | |
ENSRNOT00000120010 | ENTREZGENE | |
ENSRNOT00000120010.1 | UniProtKB/TrEMBL | |
ENSRNOT00000146787 | ENTREZGENE | |
Gene3D-CATH | 2.130.10.30 | UniProtKB/TrEMBL |
Potassium Channel Kv1.1, Chain A | UniProtKB/TrEMBL | |
InterPro | BTB/POZ-like | UniProtKB/TrEMBL |
BTB/POZ_fold | UniProtKB/TrEMBL | |
RCBTB1_BTB_POZ | UniProtKB/TrEMBL | |
Reg_chr_condens | UniProtKB/TrEMBL | |
Reg_csome_cond/b-lactamase_inh | UniProtKB/TrEMBL | |
Signaling_Regulatory_Domain | UniProtKB/TrEMBL | |
KEGG Report | rno:361050 | UniProtKB/TrEMBL |
NCBI Gene | 361050 | ENTREZGENE |
PANTHER | BTK-BINDING PROTEIN-RELATED | UniProtKB/TrEMBL |
RCC1 AND BTB DOMAIN-CONTAINING PROTEIN 1 ISOFORM X1 | UniProtKB/TrEMBL | |
Pfam | BTB | UniProtKB/TrEMBL |
RCC1 | UniProtKB/TrEMBL | |
WD40_RLD | UniProtKB/TrEMBL | |
PhenoGen | Rcbtb1 | PhenoGen |
PRINTS | RCCNDNSATION | UniProtKB/TrEMBL |
PROSITE | BTB | UniProtKB/TrEMBL |
RCC1_2 | UniProtKB/TrEMBL | |
RCC1_3 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000021712 | RatGTEx |
SMART | BTB | UniProtKB/TrEMBL |
Superfamily-SCOP | BTB/POZ_fold | UniProtKB/TrEMBL |
RCC1/BLIP-II | UniProtKB/TrEMBL | |
UniProt | A0A0G2JU79_RAT | UniProtKB/TrEMBL |
A0A8I5ZM64 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KHE8 | ENTREZGENE, UniProtKB/TrEMBL | |
D4AD40_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-02-17 | Rcbtb1 | RCC1 and BTB domain containing protein 1 | Rcbtb1 | regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Rcbtb1 | regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 | Rcbtb1_predicted | regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Rcbtb1_predicted | regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |