Tp53i11 (tumor protein p53 inducible protein 11)

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Gene: Tp53i11 (tumor protein p53 inducible protein 11) Rattus norvegicus

Analyze

Symbol:

Tp53i11

Name:

tumor protein p53 inducible protein 11

RGD ID:

1308395

Description:

Predicted to localize to integral component of membrane. Orthologous to human TP53I11 (tumor protein p53 inducible protein 11); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC311209; p53-induced gene 11 protein; transformation related protein 53 inducible protein 11; Trp53i11; tumor protein p53-inducible protein 11

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	79,144,824 - 79,160,056 (+)	NCBI
Rnor_6.0 Ensembl	3	82,081,906 - 82,097,056 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	82,081,838 - 82,097,064 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	88,784,239 - 88,799,481 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	77,587,546 - 77,602,708 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	77,483,977 - 77,499,142 (+)	NCBI
Celera	3	78,348,213 - 78,363,366 (+)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-butoxyethanol (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

buta-1,3-diene (ISO)

C60 fullerene (EXP)

carbamazepine (ISO)

carbon nanotube (ISO)

choline (ISO)

cisplatin (EXP,ISO)

cycloheximide (ISO)

cytarabine (ISO)

daidzein (ISO)

daidzein 7-O-beta-D-glucoside (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

disodium selenite (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

genistein (ISO)

genistein 7-O-beta-D-glucoside (ISO)

glycitein (ISO)

glycitin (ISO)

hypochlorous acid (ISO)

L-methionine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methamphetamine (ISO)

paracetamol (ISO)

parathion (ISO)

PCB138 (ISO)

pentachlorophenol (ISO)

raloxifene (ISO)

silicon dioxide (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

terbufos (ISO)

tetrachloromethane (ISO)

triphenyl phosphate (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

integral component of membrane (IEA)

References

References - curated


1.	GOA data from the GO Consortium
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Tp53i11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	79,144,824 - 79,160,056 (+)	NCBI
Rnor_6.0 Ensembl	3	82,081,906 - 82,097,056 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	82,081,838 - 82,097,064 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	88,784,239 - 88,799,481 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	77,587,546 - 77,602,708 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	77,483,977 - 77,499,142 (+)	NCBI
Celera	3	78,348,213 - 78,363,366 (+)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

TP53I11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	11	44,885,903 - 44,951,306 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	11	44,932,348 - 44,951,306 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	11	44,953,899 - 44,972,857 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	11	44,907,454 - 44,972,919 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	44,910,475 - 44,929,184 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	11	44,537,174 - 44,929,010	NCBI
Celera	11	45,100,594 - 45,119,410 (-)	NCBI
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	44,664,565 - 44,683,405 (-)	NCBI		HuRef
CHM1_1	11	44,953,150 - 44,972,262 (-)	NCBI		CHM1_1

Trp53i11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	93,017,694 - 93,032,102 (+)	NCBI	GRCm39		mm39
GRCm38	2	93,187,349 - 93,201,757 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	93,187,548 - 93,201,759 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	93,027,741 - 93,041,914 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	92,988,423 - 93,002,596 (+)	NCBI			mm8
Celera	2	94,583,279 - 94,597,451 (+)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI

Tp53i11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	2,829,210 - 2,833,197 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	2,829,212 - 2,833,197 (+)	NCBI	ChiLan1.0	ChiLan1.0

TP53I11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	45,384,055 - 45,401,579 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	11	44,890,124 - 44,908,875 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

TP53I11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	18	44,383,590 - 44,596,111 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	18	44,372,619 - 44,386,675 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Tp53i11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936562	3,826,623 - 3,841,670 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TP53I11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	17,448,200 - 17,465,703 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	17,448,056 - 17,465,703 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	18,923,930 - 18,940,870 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TP53I11
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	20,395,104 - 20,414,551 (+)	NCBI
ChlSab1.1 Ensembl	1	20,409,661 - 20,413,427 (+)	Ensembl

Tp53i11
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624767	3,350,161 - 3,362,807 (+)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	95176874	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10094081	93415837	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33477354	108914061	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	34394121	103141944	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	39248391	140271184	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	40422921	85422921	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	40523593	92654473	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	40523593	92654473	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	43295930	108914061	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	43295930	163640485	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	43295930	163640485	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	45406058	94467785	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	45406058	127023997	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	45406058	177699992	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	48561928	155263151	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	51821836	124513579	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	51822008	120917851	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	54630948	119830094	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	54631046	93415673	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	55245276	95176874	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	55245276	95176874	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	55245276	95176874	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	56735995	101735995	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	58204463	170534769	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	61241033	165369047	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	62922868	127023997	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	63049050	92654302	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	66711607	119830094	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	66711607	119830094	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	72672290	127023997	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	72973445	127023997	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	78700444	123700444	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	81136227	154416635	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	468
Count of miRNA genes:	226
Interacting mature miRNAs:	270
Transcripts:	ENSRNOT00000057001
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	34	20	10	19	10			74	26	31	11
Low		9	37	31		31	8	11		9	10		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000057001 ⟹ ENSRNOP00000053834

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	82,081,906 - 82,097,056 (+)	Ensembl

RefSeq Acc Id:

NM_001107749 ⟹ NP_001101219

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	79,144,886 - 79,160,050 (+)	NCBI
Rnor_6.0	3	82,081,897 - 82,097,058 (+)	NCBI
Rnor_5.0	3	88,784,239 - 88,799,481 (+)	NCBI
RGSC_v3.4	3	77,587,546 - 77,602,708 (+)	RGD
Celera	3	78,348,213 - 78,363,366 (+)	RGD

Sequence:

show sequence

GCCGCCAGACTCGGGCGAGCCCGGCAGCGACTTGAGTCCAGCTTGCCCTGCCCTGCCCTGCCCT
GCTTGCCCAGCGCGGCGCCGCGATGTGAGACTCCCCGGGCCGGAGCGTCCGCTGGGCACGCCAG
CACCGCGAGCGCAGCACCCCGTTGTGAGGACTGAACACAGGAGAGGAACGCTCACCTCAGATTC
CAGAGCCCATCTCAGCATCTGCTAACTGCCTGTTTCACAGAAGAAAAAATGGCAGCCAAACAGC
CTCCTCCGCTCATGAAGAAGCACAGCCAGACAGATCTTGTGAGCCGCCTGAAGACCAGAAAGAT
CCTGGGCGTGGGCGGGGAGGATGATGATGGGGAAGTGCACCGGTCAAAGATCAGCCAGGTTTTG
GGCAACGAGATAAAGTTTGCCGTGCGGGAGCCTCTGGGGCTCAGGGTCTGGCAGTTTCTCTCTG
CTATGCTGTTCTCCAGTGTGGCCATCATGGCCCTTGCCCTCCCTGACCAGCTCTACGATGCAGT
TTTTGATGGGGCTGAGGTCACGAGCAAGACCCCCATCCGCCTCTATGGTGGCGCCCTTCTTAGC
ATCTCCCTGATCATGTGGAATGCACTCTACACAGCCGAGAAGGTCATCATCCGCTGGACTCTGC
TCACTGAGGCCTGCTACTTCGGGGTGCAGTCCTTGGTGGTCACTGCCACACTTGCTGAGACGGG
CCTCATGTCCCTGGGGACCCTGCTGCTCCTGGCCAGCCGCCTCCTCTTTGTTATTGTCAGCATC
TACTACTATTACCAAGTCGGCCGGAAACCCAAGAAAGTGTAGCGGGCTGGGACCTGCCTGGGCC
TGGACCTGGGCCAGAGCAGCTGGGGACTTCACTGACCATGGGTCCCAGGCAGGCCCGCAGGCAG
GCAGGGTGTACGCACTTCCTTCCCTCCCAGGCACTCCCTGGAATCAGCTTGGATCTCCTGGGAT
TCTAGGAGTGACCAGTCAGGCTGCGGCCTCTGCATCCCACCCCTCACCCCCGTACAGGGACAAC
TCCTGGCCCTGTCTTTCTTGGCCTCTAGACTCTAACGGGCACAGTCTAGAGTGAGTTTTGGGGT
CTGGGCTGAGTCAAGGTTAGTTCCTCTGCCAGGAAATCCTTTCTAGGAGGTTGTATCAGCCCCA
GAAGCAGCTCTCAGCCTCTCCCCATCCAGAAACCGGATGTGTGAGTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCACACACACACACACACAGTAATTCTAGAGTCCCAACTGAGGTCAT
CTAGCCAAGGGGATTGACTGCCTCCCTTGAGCCAAGTTCCCCACCCCCCGTCCTGAACATCTGA
CCCTCTCTTTGGCCTGCTGTAGGTTGTTCTGATTCTCCGGCTGGCTGGCTGGCTGCCTGCCTGC
ACCCCAGAGCCCCAGTCCCTTCCCAACATGCCAGGGTTAGCTAATATACCACAGGCCTGACAGT
TCCTGGCCCCTGCCTGTCCATAGGCTCCTAGTGCATGAGGAATTCTGAGGAGAAGCAAAGTGAG
GGCATTTCTTTGGCATGGTCTCCAAGGCCTGCATGGCTACACCTGGCTCGGTGCCCCCTCCAGA
GGCTGCCCTAAGGCTTACGGGGTAAAGCCTACAGCCCCTCAAATCCTACAATGGAAAGAGACAG
GAGTGGATCTGCCATCCCTCCACATCCCAAGAGTGGGCCTCTAGAGCTGAAGATACGTCCCCGG
TGCCACCAGCCTGTGTGGCCCCTCCCCTTAGTCCTAGCTCCCAGTGCCTTCCCACCCTTCAGCA
GCAAGCACACTAAGAGATTTGGCCCGAGGCCTCTCCCTTCTGCAAGGGGGTGGTCCTCTATGCC
TGAGGAACCTTTCTCTAGGGCACCTGGGCTCACAGCCTCCCAGGGCTCAGTTGTTCCTGCTGCC
AAGTGCCCCATGACAATGGCCTGTGCCTAGTGGAGGGGACTCAGGGAAGTTTCAGTGGAAGACA
TGCTCAGCAGTGTCCTAGGCTGCTTCTGTAACCAAGGTCTGGCAGAGTGGCGAGCCCCTGCGCG
TTCAGGAAGGGCCCATTATGTATATCTGCCTCCTGTCACTGGCTTTGCGCCAGTCCCTCAGTTC
CCAACTCTTGACTCAGAGCACAGGTCCAGCCACTGCCAGCTCTTAGTACAGTGGCAGCTGCTGT
AGAGCGGGTGACATTGGTTGACTGTTCTCAGAGGATTTATCCTCTTGAATCCTCTACGAATGCA
GATATAGTCCCAAGAGAGAGAGTCGTAGGAATTGAAGATGCCAGCCATACACAGCCTGCAGGGA
CATCTGCCAGGCTTCCCCTCAGCACGAGGAGGTGGCAGGGCCTGCCTGGGAGTGGTGACCAGAT
CTCCATGGTTAAACTGCAGTGATACTTTTAGGTGGGGTGGGCTCAAGACCAGACTGAGGCTGGC
ATACAGACACCTGTGGCCTCCGGGACACACTAAGCTTGGAAGGAGGCAGCAATGGAGACAGGAG
CCCCACCCTGGCTCTGAGCTCAGGGTGCCCTGACTGCCCCCCGTCACAGCTCCTCTTGTGCTTC
TGCCTGGCCCCCAAGACTGCCTCTGTCATGGTCACTATTTATTCCTTGTTCCCTTTTCTTTTTG
TAAGAAACAGTCACAGAAAAAAAAAAAACAAAACAATGAG

hide sequence

RefSeq Acc Id:

XM_006234569 ⟹ XP_006234631

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	79,144,824 - 79,160,056 (+)	NCBI
Rnor_6.0	3	82,081,839 - 82,097,064 (+)	NCBI
Rnor_5.0	3	88,784,239 - 88,799,481 (+)	NCBI

Sequence:

show sequence

TGGGAGGGGACGGCGCGCCATTGGCTTGTGCGTGGCACTAGAGGAGGGACCAGTGCGGGCCGCC
AGACTCGGGCGAGCCCGGCAGCGACTTGAGTCCAGCTTGCCCTGCCCTGCCCTGCCCTGCTTGC
CCAGCGCGGCGCCGCGATGTGAGACTCCCCGGGCCGGAGCGTCCGCTGGGCACGCCAGCACCGC
GAGCGCAGCACCCCGTTGTGAGGACTGAACACAGGAGAGGAACGCTCACCTCAGATTCCAGAGC
CCATCTCAGCATCTGCTAACTGCCTGTTTCAAGACCAGGCTGGAAGCATCCTCCTCAACCCATT
TTACAGGAGAGGAAACTGAGGCAGCCGCAACACCATCTCCTCTTAGGCCCTGAGTAGGGCCTGG
CCACATCCTTCTCACCCTACATTGGGACCTGGGGTCTGGAAGTCCAGCAAGAACAATGGCTGAG
GCCAGTGTCTCCCCATGTCCCTCAGCAGAAGAAAAAATGGCAGCCAAACAGCCTCCTCCGCTCA
TGAAGAAGCACAGCCAGACAGATCTTGTGAGCCGCCTGAAGACCAGAAAGATCCTGGGCGTGGG
CGGGGAGGATGATGATGGGGAAGTGCACCGGTCAAAGATCAGCCAGGTTTTGGGCAACGAGATA
AAGTTTGCCGTGCGGGAGCCTCTGGGGCTCAGGGTCTGGCAGTTTCTCTCTGCTATGCTGTTCT
CCAGTGTGGCCATCATGGCCCTTGCCCTCCCTGACCAGCTCTACGATGCAGTTTTTGATGGGGC
TGAGGTCACGAGCAAGACCCCCATCCGCCTCTATGGTGGCGCCCTTCTTAGCATCTCCCTGATC
ATGTGGAATGCACTCTACACAGCCGAGAAGGTCATCATCCGCTGGACTCTGCTCACTGAGGCCT
GCTACTTCGGGGTGCAGTCCTTGGTGGTCACTGCCACACTTGCTGAGACGGGCCTCATGTCCCT
GGGGACCCTGCTGCTCCTGGCCAGCCGCCTCCTCTTTGTTATTGTCAGCATCTACTACTATTAC
CAAGTCGGCCGGAAACCCAAGAAAGTGTAGCGGGCTGGGACCTGCCTGGGCCTGGACCTGGGCC
AGAGCAGCTGGGGACTTCACTGACCATGGGTCCCAGGCAGGCCCGCAGGCAGGCAGGGTGTACG
CACTTCCTTCCCTCCCAGGCACTCCCTGGAATCAGCTTGGATCTCCTGGGATTCTAGGAGTGAC
CAGTCAGGCTGCGGCCTCTGCATCCCACCCCTCACCCCCGTACAGGGACAACTCCTGGCCCTGT
CTTTCTTGGCCTCTAGACTCTAACGGGCACAGTCTAGAGTGAGTTTTGGGGTCTGGGCTGAGTC
AAGGTTAGTTCCTCTGCCAGGAAATCCTTTCTAGGAGGTTGTATCAGCCCCAGAAGCAGCTCTC
AGCCTCTCCCCATCCAGAAACCGGATGTGTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCACACACACACACACACAGTAATTCTAGAGTCCCAACTGAGGTCATCTAGCCAAGGGGAT
TGACTGCCTCCCTTGAGCCAAGTTCCCCACCCCCCGTCCTGAACATCTGACCCTCTCTTTGGCC
TGCTGTAGGTTGTTCTGATTCTCCGGCTGGCTGGCTGGCTGCCTGCCTGCACCCCAGAGCCCCA
GTCCCTTCCCAACATGCCAGGGTTAGCTAATATACCACAGGCCTGACAGTTCCTGGCCCCTGCC
TGTCCATAGGCTCCTAGTGCATGAGGAATTCTGAGGAGAAGCAAAGTGAGGGCATTTCTTTGGC
ATGGTCTCCAAGGCCTGCATGGCTACACCTGGCTCGGTGCCCCCTCCAGAGGCTGCCCTAAGGC
TTACGGGGTAAAGCCTACAGCCCCTCAAATCCTACAATGGAAAGAGACAGGAGTGGATCTGCCA
TCCCTCCACATCCCAAGAGTGGGCCTCTAGAGCTGAAGATACGTCCCCGGTGCCACCAGCCTGT
GTGGCCCCTCCCCTTAGTCCTAGCTCCCAGTGCCTTCCCACCCTTCAGCAGCAAGCACACTAAG
AGATTTGGCCCGAGGCCTCTCCCTTCTGCAAGGGGGTGGTCCTCTATGCCTGAGGAACCTTTCT
CTAGGGCACCTGGGCTCACAGCCTCCCAGGGCTCAGTTGTTCCTGCTGCCAAGTGCCCCATGAC
AATGGCCTGTGCCTAGTGGAGGGGACTCAGGGAAGTTTCAGTGGAAGACATGCTCAGCAGTGTC
CTAGGCTGCTTCTGTAACCAAGGTCTGGCAGAGTGGCGAGCCCCTGCGCGTTCAGGAAGGGCCC
ATTATGTATATCTGCCTCCTGTCACTGGCTTTGCGCCAGTCCCTCAGTTCCCAACTCTTGACTC
AGAGCACAGGTCCAGCCACTGCCAGCTCTTAGTACAGTGGCAGCTGCTGTAGAGCGGGTGACAT
TGGTTGACTGTTCTCAGAGGATTTATCCTCTTGAATCCTCTACGAATGCAGATATAGTCCCAAG
AGAGAGAGTCGTAGGAATTGAAGATGCCAGCCATACACAGCCTGCAGGGACATCTGCCAGGCTT
CCCCTCAGCACGAGGAGGTGGCAGGGCCTGCCTGGGAGTGGTGACCAGATCTCCATGGTTAAAC
TGCAGTGATACTTTTAGGTGGGGTGGGCTCAAGACCAGACTGAGGCTGGCATACAGACACCTGT
GGCCTCCGGGACACACTAAGCTTGGAAGGAGGCAGCAATGGAGACAGGAGCCCCACCCTGGCTC
TGAGCTCAGGGTGCCCTGACTGCCCCCCGTCACAGCTCCTCTTGTGCTTCTGCCTGGCCCCCAA
GACTGCCTCTGTCATGGTCACTATTTATTCCTTGTTCCCTTTTCTTTTTGTAAGAAACAGTCAC
AGAAAAAAAAAAAACAAAACAATGAGAAACGA

hide sequence

RefSeq Acc Id:

XM_006234570 ⟹ XP_006234632

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	79,144,824 - 79,160,056 (+)	NCBI
Rnor_6.0	3	82,081,839 - 82,097,061 (+)	NCBI
Rnor_5.0	3	88,784,239 - 88,799,481 (+)	NCBI

Sequence:

show sequence

TGGGAGGGGACGGCGCGCCATTGGCTTGTGCGTGGCACTAGAGGAGGGACCAGTGCGGGCCGCC
AGACTCGGGCGAGCCCGGCAGCGACTTGAGTCCAGCTTGCCCTGCCCTGCCCTGCCCTGCTTGC
CCAGCGCGGCGCCGCGATGTGAGACTCCCCGGGCCGGAGCGTCCGCTGGGCACGCCAGCACCGC
GAGCGCAGCACCCCGTTGTGAGGACTGAACACAGGAGAGGAACGCTCACCTCAGATTCCAGAGC
CCATCTCAGCATCTGCTAACTGCCTGTTTCAGAGAGGAAACTGAGGCAGCCGCAACACCATCTC
CTCTTAGGCCCTGAGTAGGGCCTGGCCACATCCTTCTCACCCTACATTGGGACCTGGGGTCTGG
AAGTCCAGCAAGAACAATGGCTGAGGCCAGTGTCTCCCCATGTCCCTCAGCAGAAGAAAAAATG
GCAGCCAAACAGCCTCCTCCGCTCATGAAGAAGCACAGCCAGACAGATCTTGTGAGCCGCCTGA
AGACCAGAAAGATCCTGGGCGTGGGCGGGGAGGATGATGATGGGGAAGTGCACCGGTCAAAGAT
CAGCCAGGTTTTGGGCAACGAGATAAAGTTTGCCGTGCGGGAGCCTCTGGGGCTCAGGGTCTGG
CAGTTTCTCTCTGCTATGCTGTTCTCCAGTGTGGCCATCATGGCCCTTGCCCTCCCTGACCAGC
TCTACGATGCAGTTTTTGATGGGGCTGAGGTCACGAGCAAGACCCCCATCCGCCTCTATGGTGG
CGCCCTTCTTAGCATCTCCCTGATCATGTGGAATGCACTCTACACAGCCGAGAAGGTCATCATC
CGCTGGACTCTGCTCACTGAGGCCTGCTACTTCGGGGTGCAGTCCTTGGTGGTCACTGCCACAC
TTGCTGAGACGGGCCTCATGTCCCTGGGGACCCTGCTGCTCCTGGCCAGCCGCCTCCTCTTTGT
TATTGTCAGCATCTACTACTATTACCAAGTCGGCCGGAAACCCAAGAAAGTGTAGCGGGCTGGG
ACCTGCCTGGGCCTGGACCTGGGCCAGAGCAGCTGGGGACTTCACTGACCATGGGTCCCAGGCA
GGCCCGCAGGCAGGCAGGGTGTACGCACTTCCTTCCCTCCCAGGCACTCCCTGGAATCAGCTTG
GATCTCCTGGGATTCTAGGAGTGACCAGTCAGGCTGCGGCCTCTGCATCCCACCCCTCACCCCC
GTACAGGGACAACTCCTGGCCCTGTCTTTCTTGGCCTCTAGACTCTAACGGGCACAGTCTAGAG
TGAGTTTTGGGGTCTGGGCTGAGTCAAGGTTAGTTCCTCTGCCAGGAAATCCTTTCTAGGAGGT
TGTATCAGCCCCAGAAGCAGCTCTCAGCCTCTCCCCATCCAGAAACCGGATGTGTGAGTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAGTAATTCTAGAGTCCCA
ACTGAGGTCATCTAGCCAAGGGGATTGACTGCCTCCCTTGAGCCAAGTTCCCCACCCCCCGTCC
TGAACATCTGACCCTCTCTTTGGCCTGCTGTAGGTTGTTCTGATTCTCCGGCTGGCTGGCTGGC
TGCCTGCCTGCACCCCAGAGCCCCAGTCCCTTCCCAACATGCCAGGGTTAGCTAATATACCACA
GGCCTGACAGTTCCTGGCCCCTGCCTGTCCATAGGCTCCTAGTGCATGAGGAATTCTGAGGAGA
AGCAAAGTGAGGGCATTTCTTTGGCATGGTCTCCAAGGCCTGCATGGCTACACCTGGCTCGGTG
CCCCCTCCAGAGGCTGCCCTAAGGCTTACGGGGTAAAGCCTACAGCCCCTCAAATCCTACAATG
GAAAGAGACAGGAGTGGATCTGCCATCCCTCCACATCCCAAGAGTGGGCCTCTAGAGCTGAAGA
TACGTCCCCGGTGCCACCAGCCTGTGTGGCCCCTCCCCTTAGTCCTAGCTCCCAGTGCCTTCCC
ACCCTTCAGCAGCAAGCACACTAAGAGATTTGGCCCGAGGCCTCTCCCTTCTGCAAGGGGGTGG
TCCTCTATGCCTGAGGAACCTTTCTCTAGGGCACCTGGGCTCACAGCCTCCCAGGGCTCAGTTG
TTCCTGCTGCCAAGTGCCCCATGACAATGGCCTGTGCCTAGTGGAGGGGACTCAGGGAAGTTTC
AGTGGAAGACATGCTCAGCAGTGTCCTAGGCTGCTTCTGTAACCAAGGTCTGGCAGAGTGGCGA
GCCCCTGCGCGTTCAGGAAGGGCCCATTATGTATATCTGCCTCCTGTCACTGGCTTTGCGCCAG
TCCCTCAGTTCCCAACTCTTGACTCAGAGCACAGGTCCAGCCACTGCCAGCTCTTAGTACAGTG
GCAGCTGCTGTAGAGCGGGTGACATTGGTTGACTGTTCTCAGAGGATTTATCCTCTTGAATCCT
CTACGAATGCAGATATAGTCCCAAGAGAGAGAGTCGTAGGAATTGAAGATGCCAGCCATACACA
GCCTGCAGGGACATCTGCCAGGCTTCCCCTCAGCACGAGGAGGTGGCAGGGCCTGCCTGGGAGT
GGTGACCAGATCTCCATGGTTAAACTGCAGTGATACTTTTAGGTGGGGTGGGCTCAAGACCAGA
CTGAGGCTGGCATACAGACACCTGTGGCCTCCGGGACACACTAAGCTTGGAAGGAGGCAGCAAT
GGAGACAGGAGCCCCACCCTGGCTCTGAGCTCAGGGTGCCCTGACTGCCCCCCGTCACAGCTCC
TCTTGTGCTTCTGCCTGGCCCCCAAGACTGCCTCTGTCATGGTCACTATTTATTCCTTGTTCCC
TTTTCTTTTTGTAAGAAACAGTCACAGAAAAAAAAAAAACAAAACAATGAGAAA

hide sequence

RefSeq Acc Id:

XM_006234571 ⟹ XP_006234633

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	79,144,824 - 79,160,056 (+)	NCBI
Rnor_6.0	3	82,091,495 - 82,097,064 (+)	NCBI
Rnor_5.0	3	88,784,239 - 88,799,481 (+)	NCBI

Sequence:

show sequence

GCCTGTTTCAGTACGTGCCCAGGACTGGCCTGTGGAATTGCTAGGGGTGGCATGTTTCGGGGCT
GTGGAACATGGTGGGCGGAGCAGAAGAAAAAATGGCAGCCAAACAGCCTCCTCCGCTCATGAAG
AAGCACAGCCAGACAGATCTTGTGAGCCGCCTGAAGACCAGAAAGATCCTGGGCGTGGGCGGGG
AGGATGATGATGGGGAAGTGCACCGGTCAAAGATCAGCCAGGTTTTGGGCAACGAGATAAAGTT
TGCCGTGCGGGAGCCTCTGGGGCTCAGGGTCTGGCAGTTTCTCTCTGCTATGCTGTTCTCCAGT
GTGGCCATCATGGCCCTTGCCCTCCCTGACCAGCTCTACGATGCAGTTTTTGATGGGGCTGAGG
TCACGAGCAAGACCCCCATCCGCCTCTATGGTGGCGCCCTTCTTAGCATCTCCCTGATCATGTG
GAATGCACTCTACACAGCCGAGAAGGTCATCATCCGCTGGACTCTGCTCACTGAGGCCTGCTAC
TTCGGGGTGCAGTCCTTGGTGGTCACTGCCACACTTGCTGAGACGGGCCTCATGTCCCTGGGGA
CCCTGCTGCTCCTGGCCAGCCGCCTCCTCTTTGTTATTGTCAGCATCTACTACTATTACCAAGT
CGGCCGGAAACCCAAGAAAGTGTAGCGGGCTGGGACCTGCCTGGGCCTGGACCTGGGCCAGAGC
AGCTGGGGACTTCACTGACCATGGGTCCCAGGCAGGCCCGCAGGCAGGCAGGGTGTACGCACTT
CCTTCCCTCCCAGGCACTCCCTGGAATCAGCTTGGATCTCCTGGGATTCTAGGAGTGACCAGTC
AGGCTGCGGCCTCTGCATCCCACCCCTCACCCCCGTACAGGGACAACTCCTGGCCCTGTCTTTC
TTGGCCTCTAGACTCTAACGGGCACAGTCTAGAGTGAGTTTTGGGGTCTGGGCTGAGTCAAGGT
TAGTTCCTCTGCCAGGAAATCCTTTCTAGGAGGTTGTATCAGCCCCAGAAGCAGCTCTCAGCCT
CTCCCCATCCAGAAACCGGATGTGTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
ACACACACACACACACAGTAATTCTAGAGTCCCAACTGAGGTCATCTAGCCAAGGGGATTGACT
GCCTCCCTTGAGCCAAGTTCCCCACCCCCCGTCCTGAACATCTGACCCTCTCTTTGGCCTGCTG
TAGGTTGTTCTGATTCTCCGGCTGGCTGGCTGGCTGCCTGCCTGCACCCCAGAGCCCCAGTCCC
TTCCCAACATGCCAGGGTTAGCTAATATACCACAGGCCTGACAGTTCCTGGCCCCTGCCTGTCC
ATAGGCTCCTAGTGCATGAGGAATTCTGAGGAGAAGCAAAGTGAGGGCATTTCTTTGGCATGGT
CTCCAAGGCCTGCATGGCTACACCTGGCTCGGTGCCCCCTCCAGAGGCTGCCCTAAGGCTTACG
GGGTAAAGCCTACAGCCCCTCAAATCCTACAATGGAAAGAGACAGGAGTGGATCTGCCATCCCT
CCACATCCCAAGAGTGGGCCTCTAGAGCTGAAGATACGTCCCCGGTGCCACCAGCCTGTGTGGC
CCCTCCCCTTAGTCCTAGCTCCCAGTGCCTTCCCACCCTTCAGCAGCAAGCACACTAAGAGATT
TGGCCCGAGGCCTCTCCCTTCTGCAAGGGGGTGGTCCTCTATGCCTGAGGAACCTTTCTCTAGG
GCACCTGGGCTCACAGCCTCCCAGGGCTCAGTTGTTCCTGCTGCCAAGTGCCCCATGACAATGG
CCTGTGCCTAGTGGAGGGGACTCAGGGAAGTTTCAGTGGAAGACATGCTCAGCAGTGTCCTAGG
CTGCTTCTGTAACCAAGGTCTGGCAGAGTGGCGAGCCCCTGCGCGTTCAGGAAGGGCCCATTAT
GTATATCTGCCTCCTGTCACTGGCTTTGCGCCAGTCCCTCAGTTCCCAACTCTTGACTCAGAGC
ACAGGTCCAGCCACTGCCAGCTCTTAGTACAGTGGCAGCTGCTGTAGAGCGGGTGACATTGGTT
GACTGTTCTCAGAGGATTTATCCTCTTGAATCCTCTACGAATGCAGATATAGTCCCAAGAGAGA
GAGTCGTAGGAATTGAAGATGCCAGCCATACACAGCCTGCAGGGACATCTGCCAGGCTTCCCCT
CAGCACGAGGAGGTGGCAGGGCCTGCCTGGGAGTGGTGACCAGATCTCCATGGTTAAACTGCAG
TGATACTTTTAGGTGGGGTGGGCTCAAGACCAGACTGAGGCTGGCATACAGACACCTGTGGCCT
CCGGGACACACTAAGCTTGGAAGGAGGCAGCAATGGAGACAGGAGCCCCACCCTGGCTCTGAGC
TCAGGGTGCCCTGACTGCCCCCCGTCACAGCTCCTCTTGTGCTTCTGCCTGGCCCCCAAGACTG
CCTCTGTCATGGTCACTATTTATTCCTTGTTCCCTTTTCTTTTTGTAAGAAACAGTCACAGAAA
AAAAAAAAACAAAACAATGAGAAACGA

hide sequence

RefSeq Acc Id:

XM_006234572 ⟹ XP_006234634

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	79,144,827 - 79,160,056 (+)	NCBI
Rnor_6.0	3	82,081,838 - 82,097,064 (+)	NCBI
Rnor_5.0	3	88,784,239 - 88,799,481 (+)	NCBI

Sequence:

show sequence

GTGGGAGGGGACGGCGCGCCATTGGCTTGTGCGTGGCACTAGAGGAGGGACCAGTGCGGGCCGC
CAGACTCGGGCGAGCCCGGCAGCGACTTGAGTCCAGCTTGCCCTGCCCTGCCCTGCCCTGCTTG
CCCAGCGCGGCGCCGCGATGTGAGACTCCCCGGGCCGGAGCGTCCGCTGGGCACGCCAGCACCG
CGAGCGCAGCACCCCGTTGTGAGGACTGAACACAGGAGAGGAACGCTCACCTCAGATTCCAGAG
CCCATCTCAGCATCTGCTAACTGCCTGTTTCAAAGAAAAAATGGCAGCCAAACAGCCTCCTCCG
CTCATGAAGAAGCACAGCCAGACAGATCTTGTGAGCCGCCTGAAGACCAGAAAGATCCTGGGCG
TGGGCGGGGAGGATGATGATGGGGAAGTGCACCGGTCAAAGATCAGCCAGGTTTTGGGCAACGA
GATAAAGTTTGCCGTGCGGGAGCCTCTGGGGCTCAGGGTCTGGCAGTTTCTCTCTGCTATGCTG
TTCTCCAGTGTGGCCATCATGGCCCTTGCCCTCCCTGACCAGCTCTACGATGCAGTTTTTGATG
GGGCTGAGGTCACGAGCAAGACCCCCATCCGCCTCTATGGTGGCGCCCTTCTTAGCATCTCCCT
GATCATGTGGAATGCACTCTACACAGCCGAGAAGGTCATCATCCGCTGGACTCTGCTCACTGAG
GCCTGCTACTTCGGGGTGCAGTCCTTGGTGGTCACTGCCACACTTGCTGAGACGGGCCTCATGT
CCCTGGGGACCCTGCTGCTCCTGGCCAGCCGCCTCCTCTTTGTTATTGTCAGCATCTACTACTA
TTACCAAGTCGGCCGGAAACCCAAGAAAGTGTAGCGGGCTGGGACCTGCCTGGGCCTGGACCTG
GGCCAGAGCAGCTGGGGACTTCACTGACCATGGGTCCCAGGCAGGCCCGCAGGCAGGCAGGGTG
TACGCACTTCCTTCCCTCCCAGGCACTCCCTGGAATCAGCTTGGATCTCCTGGGATTCTAGGAG
TGACCAGTCAGGCTGCGGCCTCTGCATCCCACCCCTCACCCCCGTACAGGGACAACTCCTGGCC
CTGTCTTTCTTGGCCTCTAGACTCTAACGGGCACAGTCTAGAGTGAGTTTTGGGGTCTGGGCTG
AGTCAAGGTTAGTTCCTCTGCCAGGAAATCCTTTCTAGGAGGTTGTATCAGCCCCAGAAGCAGC
TCTCAGCCTCTCCCCATCCAGAAACCGGATGTGTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCACACACACACACACACAGTAATTCTAGAGTCCCAACTGAGGTCATCTAGCCAAGG
GGATTGACTGCCTCCCTTGAGCCAAGTTCCCCACCCCCCGTCCTGAACATCTGACCCTCTCTTT
GGCCTGCTGTAGGTTGTTCTGATTCTCCGGCTGGCTGGCTGGCTGCCTGCCTGCACCCCAGAGC
CCCAGTCCCTTCCCAACATGCCAGGGTTAGCTAATATACCACAGGCCTGACAGTTCCTGGCCCC
TGCCTGTCCATAGGCTCCTAGTGCATGAGGAATTCTGAGGAGAAGCAAAGTGAGGGCATTTCTT
TGGCATGGTCTCCAAGGCCTGCATGGCTACACCTGGCTCGGTGCCCCCTCCAGAGGCTGCCCTA
AGGCTTACGGGGTAAAGCCTACAGCCCCTCAAATCCTACAATGGAAAGAGACAGGAGTGGATCT
GCCATCCCTCCACATCCCAAGAGTGGGCCTCTAGAGCTGAAGATACGTCCCCGGTGCCACCAGC
CTGTGTGGCCCCTCCCCTTAGTCCTAGCTCCCAGTGCCTTCCCACCCTTCAGCAGCAAGCACAC
TAAGAGATTTGGCCCGAGGCCTCTCCCTTCTGCAAGGGGGTGGTCCTCTATGCCTGAGGAACCT
TTCTCTAGGGCACCTGGGCTCACAGCCTCCCAGGGCTCAGTTGTTCCTGCTGCCAAGTGCCCCA
TGACAATGGCCTGTGCCTAGTGGAGGGGACTCAGGGAAGTTTCAGTGGAAGACATGCTCAGCAG
TGTCCTAGGCTGCTTCTGTAACCAAGGTCTGGCAGAGTGGCGAGCCCCTGCGCGTTCAGGAAGG
GCCCATTATGTATATCTGCCTCCTGTCACTGGCTTTGCGCCAGTCCCTCAGTTCCCAACTCTTG
ACTCAGAGCACAGGTCCAGCCACTGCCAGCTCTTAGTACAGTGGCAGCTGCTGTAGAGCGGGTG
ACATTGGTTGACTGTTCTCAGAGGATTTATCCTCTTGAATCCTCTACGAATGCAGATATAGTCC
CAAGAGAGAGAGTCGTAGGAATTGAAGATGCCAGCCATACACAGCCTGCAGGGACATCTGCCAG
GCTTCCCCTCAGCACGAGGAGGTGGCAGGGCCTGCCTGGGAGTGGTGACCAGATCTCCATGGTT
AAACTGCAGTGATACTTTTAGGTGGGGTGGGCTCAAGACCAGACTGAGGCTGGCATACAGACAC
CTGTGGCCTCCGGGACACACTAAGCTTGGAAGGAGGCAGCAATGGAGACAGGAGCCCCACCCTG
GCTCTGAGCTCAGGGTGCCCTGACTGCCCCCCGTCACAGCTCCTCTTGTGCTTCTGCCTGGCCC
CCAAGACTGCCTCTGTCATGGTCACTATTTATTCCTTGTTCCCTTTTCTTTTTGTAAGAAACAG
TCACAGAAAAAAAAAAAACAAAACAATGAGAAACGA

hide sequence

RefSeq Acc Id:

XM_039104910 ⟹ XP_038960838

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	79,154,546 - 79,160,056 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101219	(Get FASTA)	NCBI Sequence Viewer
	XP_006234631	(Get FASTA)	NCBI Sequence Viewer
	XP_006234632	(Get FASTA)	NCBI Sequence Viewer
	XP_006234633	(Get FASTA)	NCBI Sequence Viewer
	XP_006234634	(Get FASTA)	NCBI Sequence Viewer
	XP_038960838	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67758	(Get FASTA)	NCBI Sequence Viewer
	B3DMA0	(Get FASTA)	NCBI Sequence Viewer
	EDL79585	(Get FASTA)	NCBI Sequence Viewer
	EDL79586	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001101219 ⟸ NM_001107749
- UniProtKB:	B3DMA0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLGNEIKFAVREPLGLRV WQFLSAMLFSSVAIMALALPDQLYDAVFDGAEVTSKTPIRLYGGALLSISLIMWNALYTAEKVI IRWTLLTEACYFGVQSLVVTATLAETGLMSLGTLLLLASRLLFVIVSIYYYYQVGRKPKKV hide sequence

RefSeq Acc Id:

XP_006234631 ⟸ XM_006234569

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAEASVSPCPSAEEKMAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLG
NEIKFAVREPLGLRVWQFLSAMLFSSVAIMALALPDQLYDAVFDGAEVTSKTPIRLYGGALLSI
SLIMWNALYTAEKVIIRWTLLTEACYFGVQSLVVTATLAETGLMSLGTLLLLASRLLFVIVSIY
YYYQVGRKPKKV

hide sequence

RefSeq Acc Id:

XP_006234632 ⟸ XM_006234570

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAEASVSPCPSAEEKMAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLG
NEIKFAVREPLGLRVWQFLSAMLFSSVAIMALALPDQLYDAVFDGAEVTSKTPIRLYGGALLSI
SLIMWNALYTAEKVIIRWTLLTEACYFGVQSLVVTATLAETGLMSLGTLLLLASRLLFVIVSIY
YYYQVGRKPKKV

hide sequence

RefSeq Acc Id:	XP_006234634 ⟸ XM_006234572
- Peptide Label:	isoform X3
- UniProtKB:	B3DMA0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLGNEIKFAVREPLGLRV WQFLSAMLFSSVAIMALALPDQLYDAVFDGAEVTSKTPIRLYGGALLSISLIMWNALYTAEKVI IRWTLLTEACYFGVQSLVVTATLAETGLMSLGTLLLLASRLLFVIVSIYYYYQVGRKPKKV hide sequence

RefSeq Acc Id:	XP_006234633 ⟸ XM_006234571
- Peptide Label:	isoform X2
- Sequence:	show sequence MVGGAEEKMAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLGNEIKFAV REPLGLRVWQFLSAMLFSSVAIMALALPDQLYDAVFDGAEVTSKTPIRLYGGALLSISLIMWNA LYTAEKVIIRWTLLTEACYFGVQSLVVTATLAETGLMSLGTLLLLASRLLFVIVSIYYYYQVGR KPKKV hide sequence

RefSeq Acc Id:

ENSRNOP00000053834 ⟸ ENSRNOT00000057001

RefSeq Acc Id:	XP_038960838 ⟸ XM_039104910
- Peptide Label:	isoform X1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692229

Promoter ID:

EPDNEW_R2754

Type:

initiation region

Name:

Tp53i11_1

Description:

tumor protein p53 inducible protein 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	82,081,930 - 82,081,990	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308395	AgrOrtholog
Ensembl Genes	ENSRNOG00000008738	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000053834	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000057001	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7123311	IMAGE-MGC_LOAD
InterPro	TP53I11	UniProtKB/Swiss-Prot
KEGG Report	rno:311209	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187439	IMAGE-MGC_LOAD
NCBI Gene	311209	ENTREZGENE
PANTHER	PTHR31584	UniProtKB/Swiss-Prot
Pfam	p53-inducible11	UniProtKB/Swiss-Prot
PhenoGen	Tp53i11	PhenoGen
UniProt	B3DMA0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-23	Tp53i11	tumor protein p53 inducible protein 11	Trp53i11	transformation related protein 53 inducible protein 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Trp53i11	transformation related protein 53 inducible protein 11	Tp53i11_predicted	tumor protein p53 inducible protein 11 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Tp53i11_predicted	tumor protein p53 inducible protein 11 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)