Rfesd (Rieske (Fe-S) domain containing) - Rat Genome Database
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Gene: Rfesd (Rieske (Fe-S) domain containing) Rattus norvegicus
Analyze
Symbol: Rfesd
Name: Rieske (Fe-S) domain containing
RGD ID: 1308284
Description: Predicted to have 2 iron, 2 sulfur cluster binding activity and metal ion binding activity. Orthologous to human RFESD (Rieske Fe-S domain containing); INTERACTS WITH (+)-schisandrin B; tetrachloromethane; 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC361871; RGD1308284; Rieske domain-containing protein; similar to AI256775 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.225,495,067 - 5,521,095 (-)NCBI
Rnor_6.0 Ensembl22,769,400 - 2,779,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.022,758,382 - 2,784,366 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.022,756,829 - 2,782,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.423,054,514 - 3,064,195 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.123,073,913 - 3,083,625 (-)NCBI
Celera21,975,682 - 1,985,254 (-)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Rfesd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.225,495,067 - 5,521,095 (-)NCBI
Rnor_6.0 Ensembl22,769,400 - 2,779,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.022,758,382 - 2,784,366 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.022,756,829 - 2,782,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.423,054,514 - 3,064,195 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.123,073,913 - 3,083,625 (-)NCBI
Celera21,975,682 - 1,985,254 (-)NCBICelera
Cytogenetic Map2q11NCBI
RFESD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl595,646,754 - 95,684,773 (+)EnsemblGRCh38hg38GRCh38
GRCh38595,646,777 - 95,658,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37594,982,481 - 94,993,786 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36595,008,340 - 95,018,600 (+)NCBINCBI36hg18NCBI36
Celera590,860,909 - 90,871,275 (+)NCBI
Cytogenetic Map5q15NCBI
HuRef590,172,825 - 90,183,191 (+)NCBIHuRef
CHM1_1594,415,152 - 94,425,520 (+)NCBICHM1_1
Rfesd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391376,149,654 - 76,166,831 (-)NCBIGRCm39mm39
GRCm39 Ensembl1376,149,654 - 76,166,838 (-)Ensembl
GRCm381376,001,535 - 76,018,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1376,001,535 - 76,018,719 (-)EnsemblGRCm38mm10GRCm38
MGSCv371376,138,983 - 76,156,160 (-)NCBIGRCm37mm9NCBIm37
MGSCv361376,467,537 - 76,484,564 (-)NCBImm8
Celera1378,330,947 - 78,337,560 (-)NCBICelera
Cytogenetic Map13C1NCBI
Rfesd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541816,896,522 - 16,912,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541816,897,714 - 16,900,324 (-)NCBIChiLan1.0ChiLan1.0
RFESD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1519,836,388 - 19,847,697 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0519,692,054 - 19,702,479 (-)NCBIMhudiblu_PPA_v0panPan3
RFESD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl313,949,145 - 13,951,503 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1313,948,582 - 13,961,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rfesd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365237,679,232 - 7,691,447 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RFESD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2102,243,808 - 102,254,278 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12102,243,788 - 102,254,278 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2295,686,349 - 95,696,840 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RFESD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1489,524,162 - 89,576,505 (+)NCBI
ChlSab1.1 Ensembl489,531,494 - 89,533,764 (+)Ensembl
Rfesd
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474314,295,923 - 14,322,805 (+)NCBI

Position Markers
RH134887  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.022,769,421 - 2,769,603NCBIRnor6.0
Rnor_5.022,767,868 - 2,768,050UniSTSRnor5.0
RGSC_v3.423,054,535 - 3,054,717UniSTSRGSC3.4
Celera21,975,703 - 1,975,885UniSTS
Cytogenetic Map2q11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135167060Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141179397Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000017098
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 53 37 19 37 6 8 74 35 39 11 6
Low 9 4 4 4 2 3 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017098   ⟹   ENSRNOP00000017098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl22,769,400 - 2,779,109 (-)Ensembl
RefSeq Acc Id: NM_001108540   ⟹   NP_001102010
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,506,085 - 5,515,766 (-)NCBI
Rnor_6.022,769,400 - 2,779,109 (-)NCBI
Rnor_5.022,756,829 - 2,782,885 (-)NCBI
RGSC_v3.423,054,514 - 3,064,195 (-)RGD
Celera21,975,682 - 1,985,254 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231706   ⟹   XP_006231768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,501,939 - 5,520,986 (-)NCBI
Rnor_6.022,769,358 - 2,784,363 (-)NCBI
Rnor_5.022,756,829 - 2,782,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231708   ⟹   XP_006231770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,501,939 - 5,520,978 (-)NCBI
Rnor_6.022,769,358 - 2,784,363 (-)NCBI
Rnor_5.022,756,829 - 2,782,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231709   ⟹   XP_006231771
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,501,939 - 5,520,978 (-)NCBI
Rnor_6.022,769,358 - 2,784,363 (-)NCBI
Rnor_5.022,756,829 - 2,782,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231711   ⟹   XP_006231773
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.022,758,382 - 2,784,366 (-)NCBI
Rnor_5.022,756,829 - 2,782,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102502   ⟹   XP_038958430
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,501,163 - 5,519,880 (-)NCBI
RefSeq Acc Id: XM_039102503   ⟹   XP_038958431
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,501,939 - 5,520,980 (-)NCBI
RefSeq Acc Id: XM_039102504   ⟹   XP_038958432
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,501,939 - 5,520,978 (-)NCBI
RefSeq Acc Id: XM_039102505   ⟹   XP_038958433
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,501,163 - 5,521,095 (-)NCBI
RefSeq Acc Id: XM_039102506   ⟹   XP_038958434
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,495,067 - 5,519,898 (-)NCBI
RefSeq Acc Id: XM_039102507   ⟹   XP_038958435
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,495,067 - 5,521,007 (-)NCBI
RefSeq Acc Id: XM_039102508   ⟹   XP_038958436
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,495,067 - 5,520,991 (-)NCBI
RefSeq Acc Id: XR_005500308
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,495,067 - 5,515,755 (-)NCBI
RefSeq Acc Id: XR_005500309
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.225,495,067 - 5,515,755 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102010   ⟸   NM_001108540
- UniProtKB: D3ZF58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231773   ⟸   XM_006231711
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006231771   ⟸   XM_006231709
- Peptide Label: isoform X3
- UniProtKB: D3ZF58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231770   ⟸   XM_006231708
- Peptide Label: isoform X3
- UniProtKB: D3ZF58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231768   ⟸   XM_006231706
- Peptide Label: isoform X3
- UniProtKB: D3ZF58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017098   ⟸   ENSRNOT00000017098
RefSeq Acc Id: XP_038958435   ⟸   XM_039102507
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038958436   ⟸   XM_039102508
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038958434   ⟸   XM_039102506
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038958433   ⟸   XM_039102505
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958430   ⟸   XM_039102502
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958431   ⟸   XM_039102503
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958432   ⟸   XM_039102504
- Peptide Label: isoform X3
Protein Domains
Rieske

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308284 AgrOrtholog
Ensembl Genes ENSRNOG00000012810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017098 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017098 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.102.10.10 UniProtKB/TrEMBL
InterPro Rieske_2Fe-2S UniProtKB/TrEMBL
  Rieske_2Fe-2S_sf UniProtKB/TrEMBL
KEGG Report rno:361871 UniProtKB/TrEMBL
NCBI Gene 361871 ENTREZGENE
Pfam Rieske UniProtKB/TrEMBL
PhenoGen Rfesd PhenoGen
PROSITE RIESKE UniProtKB/TrEMBL
Superfamily-SCOP Rieske_dom UniProtKB/TrEMBL
UniProt D3ZF58 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Rfesd  Rieske (Fe-S) domain containing  RGD1308284_predicted  similar to AI256775 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1308284_predicted  similar to AI256775 protein (predicted)  LOC361871_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361871_predicted  similar to AI256775 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL