Arhgef40 (Rho guanine nucleotide exchange factor 40) - Rat Genome Database

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Gene: Arhgef40 (Rho guanine nucleotide exchange factor 40) Rattus norvegicus
Analyze
Symbol: Arhgef40
Name: Rho guanine nucleotide exchange factor 40
RGD ID: 1308093
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of catalytic activity. Predicted to be located in cytosol and plasma membrane. Orthologous to human ARHGEF40 (Rho guanine nucleotide exchange factor 40); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361034; RGD1308093; Rho guanine nucleotide exchange factor (GEF) 40; similar to FLJ00128 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21524,672,645 - 24,696,510 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1524,672,763 - 24,696,510 (+)Ensembl
Rnor_6.01528,377,916 - 28,403,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,377,996 - 28,403,090 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,189,787 - 32,214,322 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,412,068 - 27,433,673 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11527,381,978 - 27,448,481 (+)NCBI
Celera1524,980,711 - 25,001,821 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References


Genomics

Comparative Map Data
Arhgef40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21524,672,645 - 24,696,510 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1524,672,763 - 24,696,510 (+)Ensembl
Rnor_6.01528,377,916 - 28,403,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,377,996 - 28,403,090 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,189,787 - 32,214,322 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,412,068 - 27,433,673 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11527,381,978 - 27,448,481 (+)NCBI
Celera1524,980,711 - 25,001,821 (+)NCBICelera
Cytogenetic Map15p14NCBI
ARHGEF40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,061,264 - 21,090,248 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1421,070,273 - 21,090,248 (+)EnsemblGRCh38hg38GRCh38
GRCh371421,538,463 - 21,558,407 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,608,367 - 20,627,876 (+)NCBINCBI36hg18NCBI36
Celera141,399,096 - 1,418,597 (+)NCBI
Cytogenetic Map14q11.2NCBI
HuRef141,659,082 - 1,679,063 (+)NCBIHuRef
CHM1_11421,540,206 - 21,560,196 (+)NCBICHM1_1
T2T-CHM13v2.01415,267,734 - 15,287,664 (+)NCBI
Arhgef40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,222,158 - 52,243,704 (+)NCBIGRCm39mm39
GRCm39 Ensembl1452,222,176 - 52,243,708 (+)Ensembl
GRCm381451,984,428 - 52,006,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1451,984,719 - 52,006,251 (+)EnsemblGRCm38mm10GRCm38
MGSCv371452,604,508 - 52,625,922 (+)NCBIGRCm37mm9NCBIm37
MGSCv361450,906,882 - 50,927,574 (+)NCBImm8
Celera1448,965,121 - 48,986,199 (+)NCBICelera
Cytogenetic Map14C2NCBI
Arhgef40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,837,899 - 1,856,005 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,837,903 - 1,854,490 (+)NCBIChiLan1.0ChiLan1.0
ARHGEF40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11419,967,448 - 19,986,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,969,664 - 19,985,466 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0141,884,772 - 1,904,120 (+)NCBIMhudiblu_PPA_v0panPan3
ARHGEF40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,161,418 - 18,178,325 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1518,160,835 - 18,179,029 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,645,099 - 18,663,527 (+)NCBI
ROS_Cfam_1.01518,420,461 - 18,438,881 (+)NCBI
ROS_Cfam_1.0 Ensembl1518,420,553 - 18,438,800 (+)Ensembl
UMICH_Zoey_3.11518,101,757 - 18,120,163 (+)NCBI
UNSW_CanFamBas_1.01518,157,742 - 18,176,146 (+)NCBI
UU_Cfam_GSD_1.01518,285,662 - 18,304,080 (+)NCBI
Arhgef40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864032,365,417 - 32,384,116 (+)NCBI
SpeTri2.0NW_004936880277,002 - 293,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,043,995 - 78,067,546 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARHGEF40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,543,572 - 21,563,229 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,546,064 - 21,562,558 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605924,871,998 - 24,892,312 (-)NCBIVero_WHO_p1.0
Arhgef40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,067,138 - 7,084,663 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248257,067,010 - 7,084,928 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH138212  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21524,695,926 - 24,696,046 (+)MAPPERmRatBN7.2
Rnor_6.01528,402,507 - 28,402,626NCBIRnor6.0
Rnor_5.01532,213,739 - 32,213,858UniSTSRnor5.0
RGSC_v3.41527,434,234 - 27,434,353UniSTSRGSC3.4
Celera1525,001,238 - 25,001,357UniSTS
RH 3.4 Map15199.37UniSTS
Cytogenetic Map15p14UniSTS
MARC_7201-7202:996687628:3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21524,693,432 - 24,693,838 (+)MAPPERmRatBN7.2
Rnor_6.01528,400,014 - 28,400,418NCBIRnor6.0
Rnor_5.01532,211,246 - 32,211,650UniSTSRnor5.0
RGSC_v3.41527,431,741 - 27,432,145UniSTSRGSC3.4
Celera1524,998,745 - 24,999,149UniSTS
Cytogenetic Map15p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:470
Count of miRNA genes:188
Interacting mature miRNAs:231
Transcripts:ENSRNOT00000015331, ENSRNOT00000028919
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 33 16 6 5 6 2 2 74 24 34 11 2
Low 3 10 41 35 14 35 6 9 11 7 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000078475   ⟹   ENSRNOP00000071018
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,672,763 - 24,696,510 (+)Ensembl
Rnor_6.0 Ensembl1528,377,996 - 28,403,090 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104210   ⟹   ENSRNOP00000082140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,675,361 - 24,696,510 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108540   ⟹   ENSRNOP00000096089
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,672,763 - 24,696,510 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115526   ⟹   ENSRNOP00000079762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,672,763 - 24,694,781 (+)Ensembl
RefSeq Acc Id: NM_001271313   ⟹   NP_001258242
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,763 - 24,696,510 (+)NCBI
Rnor_6.01528,377,996 - 28,403,090 (+)NCBI
Rnor_5.01532,189,787 - 32,214,322 (+)NCBI
Celera1524,980,711 - 25,001,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093476   ⟹   XP_038949404
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,647 - 24,695,366 (+)NCBI
RefSeq Acc Id: XM_039093477   ⟹   XP_038949405
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,646 - 24,695,366 (+)NCBI
RefSeq Acc Id: XM_039093478   ⟹   XP_038949406
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,646 - 24,695,971 (+)NCBI
RefSeq Acc Id: XM_039093479   ⟹   XP_038949407
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,646 - 24,695,366 (+)NCBI
RefSeq Acc Id: XM_039093480   ⟹   XP_038949408
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,646 - 24,690,735 (+)NCBI
RefSeq Acc Id: XR_001841260
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,647 - 24,695,366 (+)NCBI
Rnor_6.01528,377,916 - 28,401,952 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005493755
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,646 - 24,695,366 (+)NCBI
RefSeq Acc Id: XR_005493756
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,645 - 24,695,366 (+)NCBI
RefSeq Acc Id: XR_005493757
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21524,672,647 - 24,695,366 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001258242   ⟸   NM_001271313
- UniProtKB: A0A0G2JZE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071018   ⟸   ENSRNOT00000078475
RefSeq Acc Id: XP_038949406   ⟸   XM_039093478
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949405   ⟸   XM_039093477
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949407   ⟸   XM_039093479
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949408   ⟸   XM_039093480
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949404   ⟸   XM_039093476
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000079762   ⟸   ENSRNOT00000115526
RefSeq Acc Id: ENSRNOP00000096089   ⟸   ENSRNOT00000108540
RefSeq Acc Id: ENSRNOP00000082140   ⟸   ENSRNOT00000104210
Protein Domains
DH   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZE7-F1-model_v2 AlphaFold A0A0G2JZE7 1-1516 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699634
Promoter ID:EPDNEW_R10158
Type:initiation region
Name:Arhgef40_1
Description:Rho guanine nucleotide exchange factor 40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01528,378,055 - 28,378,115EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 32214244 32214245 G A snv HTX/Kyo (KyushuU), ZF (KyushuU), IS-Tlk/Kyo (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308093 AgrOrtholog
BioCyc Gene G2FUF-13998 BioCyc
Ensembl Genes ENSRNOG00000052354 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000071018 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000096089 ENTREZGENE
Ensembl Transcript ENSRNOT00000078475 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000108540 ENTREZGENE
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
KEGG Report rno:361034 UniProtKB/TrEMBL
NCBI Gene 361034 ENTREZGENE
Pfam RhoGEF UniProtKB/TrEMBL
PhenoGen Arhgef40 PhenoGen
PROSITE DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
UniProt A0A0G2JZE7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-11 Arhgef40  Rho guanine nucleotide exchange factor 40  Arhgef40  Rho guanine nucleotide exchange factor (GEF) 40  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-05-26 Arhgef40  Rho guanine nucleotide exchange factor (GEF) 40  RGD1308093  similar to FLJ00128 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308093  similar to FLJ00128 protein   RGD1308093_predicted  similar to FLJ00128 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308093_predicted  similar to FLJ00128 protein (predicted)  LOC361034_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361034_predicted  similar to FLJ00128 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL