Mpp5 (membrane palmitoylated protein 5)

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Gene: Mpp5 (membrane palmitoylated protein 5) Rattus norvegicus

Analyze

Symbol:

Mpp5

Name:

membrane palmitoylated protein 5

RGD ID:

1308071

Description:

Predicted to have protein domain specific binding activity. Involved in myelin assembly and protein localization to plasma membrane. Localizes to protein-containing complex. Orthologous to human MPP5 (membrane palmitoylated protein 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC314259; MAGUK p55 subfamily member 5; membrane protein, palmitoylated 5; membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	101,923,675 - 102,029,705 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	101,923,785 - 102,028,592 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	111,299,821 - 111,404,519 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	101,414,657 - 101,471,504 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	101,370,971 - 101,477,629 (+)	NCBI
Celera	6	95,983,793 - 96,039,503 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebral palsy (ISO)

Leber congenital amaurosis (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloroprene (EXP)

cocaine (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

fluvastatin (ISO)

folic acid (ISO)

glafenine (EXP)

indole-3-methanol (EXP)

paracetamol (ISO)

phenobarbital (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular protein localization (ISO)

central nervous system neuron development (ISO,ISS)

cerebral cortex development (ISO,ISS)

gene expression (IEA,ISO)

morphogenesis of an epithelial sheet (ISO)

myelin assembly (IMP)

peripheral nervous system myelin maintenance (ISO)

phosphorylation (IEA)

plasma membrane organization (ISO)

protein localization to myelin sheath abaxonal region (ISO)

protein localization to plasma membrane (IMP)

regulation of transforming growth factor beta receptor signaling pathway (ISO,ISS)

Cellular Component

adherens junction (ISO,ISS)

apical part of cell (ISO)

apical plasma membrane (IEA)

axon (IEA)

bicellular tight junction (IEA)

cytoplasm (ISO)

Golgi apparatus (IEA)

lateral loop (ISO)

myelin sheath adaxonal region (ISO)

perikaryon (IEA)

plasma membrane (ISO)

protein-containing complex (IDA,ISO)

Schmidt-Lanterman incisure (ISO)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

protein binding (ISO)

protein domain specific binding (ISO)

References

References - curated


1.	MGD data from the GO Consortium
2.	Ozcelik M, etal., J Neurosci. 2010 Mar 17;30(11):4120-31. doi: 10.1523/JNEUROSCI.5185-09.2010.
3.	RGD automated import pipeline for gene-chemical interactions
4.	Wong EW, etal., Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9657-62. Epub 2008 Jul 10.

Additional References at PubMed

PMID:10753959	PMID:12477932	PMID:15914641	PMID:16885194	PMID:17332497	PMID:19056867	PMID:19506035	PMID:23201090	PMID:23376485	PMID:23533145	PMID:25636444

Genomics

Comparative Map Data

Mpp5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	101,923,675 - 102,029,705 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	101,923,785 - 102,028,592 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	111,299,821 - 111,404,519 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	101,414,657 - 101,471,504 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	101,370,971 - 101,477,629 (+)	NCBI
Celera	6	95,983,793 - 96,039,503 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

MPP5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	14	67,241,342 - 67,336,061 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	14	67,240,713 - 67,336,061 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	14	67,241,395 - 67,336,061 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	14	67,708,012 - 67,802,778 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	66,777,774 - 66,872,289 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	14	66,777,773 - 66,872,288	NCBI
Celera	14	47,767,078 - 47,861,589 (+)	NCBI
Cytogenetic Map	14	q23.3	NCBI
HuRef	14	47,877,875 - 47,972,701 (+)	NCBI		HuRef
CHM1_1	14	67,646,631 - 67,741,468 (+)	NCBI		CHM1_1

Mpp5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	78,795,606 - 78,887,488 (+)	NCBI	GRCm39		mm39
GRCm38	12	78,748,882 - 78,840,714 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	78,748,907 - 78,840,714 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	79,849,934 - 79,941,701 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	79,667,864 - 79,756,927 (+)	NCBI			mm8
Celera	12	80,213,557 - 80,305,293 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI

Mpp5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	2,874,058 - 2,918,122 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	2,871,445 - 2,937,296 (-)	NCBI	ChiLan1.0	ChiLan1.0

MPP5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	14	66,693,863 - 66,790,122 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	66,693,863 - 66,790,122 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	14	47,814,896 - 47,911,206 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MPP5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	8	41,275,947 - 41,327,348 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	8	41,230,230 - 41,330,017 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Mpp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936495	10,636,762 - 10,729,060 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MPP5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	90,955,680 - 91,055,620 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	90,955,524 - 91,055,923 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	97,264,802 - 97,365,354 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MPP5
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	44,483,005 - 44,576,017 (+)	NCBI
ChlSab1.1 Ensembl	24	44,483,199 - 44,573,172 (+)	Ensembl

Mpp5
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	33,659,625 - 33,758,680 (-)	NCBI

Position Markers

AW535964

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	102,028,218 - 102,028,387	NCBI	Rnor6.0
Rnor_5.0	6	111,403,032 - 111,403,201	UniSTS	Rnor5.0
RGSC_v3.4	6	101,472,686 - 101,472,855	UniSTS	RGSC3.4
Celera	6	96,040,685 - 96,040,854	UniSTS
Cytogenetic Map	6	q24	UniSTS
RH 3.4 Map	6	689.6	UniSTS

BE121443

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	102,028,084 - 102,028,236	NCBI	Rnor6.0
Rnor_5.0	6	111,402,898 - 111,403,050	UniSTS	Rnor5.0
RGSC_v3.4	6	101,472,552 - 101,472,704	UniSTS	RGSC3.4
Celera	6	96,040,551 - 96,040,703	UniSTS
Cytogenetic Map	6	q24	UniSTS
RH 3.4 Map	6	690.19	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	7009971	115379601	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	48432758	108268790	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	60606431	108154445	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	60606431	108154445	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	62263348	107263348	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	66129520	111129520	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	71206251	116206251	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	75449871	120449871	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	75623277	120276465	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	75623277	120623277	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	75623277	136143011	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	75623277	136426962	Rat
1581550	Pur8	Proteinuria QTL 8			total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	75623393	136142742	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	75623393	136142742	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	76902247	114203334	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	84763275	108464097	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	84763275	108464097	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	86422697	115379601	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	87418448	111129520	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	88507712	133507712	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	88996335	139410483	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	89631358	134631358	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	89631358	134631358	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	91703409	136703409	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (VE) (CMO:0000132)	6	92879510	137879510	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	93706176	111134673	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	97949772	133849286	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	99273921	144273921	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	99273921	144792678	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	101207574	147991367	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	292
Count of miRNA genes:	171
Interacting mature miRNAs:	222
Transcripts:	ENSRNOT00000012005
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	24	32	17	16	17	6	7	74	35	37	11	6
Low		19	25	24	3	24	2	4			4		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07073239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01045333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01045334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01045335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC120917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC139976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012005 ⟹ ENSRNOP00000012005

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	101,923,785 - 102,028,592 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092157 ⟹ ENSRNOP00000070368

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	101,924,000 - 102,026,810 (+)	Ensembl

RefSeq Acc Id:

NM_001108034 ⟹ NP_001101504

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	101,970,458 - 102,027,036 (+)	NCBI
Rnor_5.0	6	111,299,821 - 111,404,519 (+)	NCBI
RGSC_v3.4	6	101,414,657 - 101,471,504 (+)	RGD
Celera	6	95,983,793 - 96,039,503 (+)	RGD

Sequence:

show sequence

AGTTTTGCAGAATAAGAAAGCTAACCTGAATATTGGGGGGAAAGACAGAGAAGAGAAACAAGGA
TTGAAGACGAGGTTTTCCAGTTTGCATAATATTTGCCTCATGGATACATTTCATAGCATTATTA
TGTGATATGAGAAGTTATTTTTCTTTTTTGAAGTAACATGGATTTTATACTACAGAATCAAGAG
AATTGGCTTTATAGGAAATTTTGATATATAAAAAGTGATAGAGGTTTTTATAGATAACCATGAC
AACATCGTATATGAATGGGCATGTGACAGAGGAATCAGACAGCGGAATAAAAAATCTTGGTCTT
GCATCACCAGAGGAACATCCGAAACACAGAGAGATGGCTGTTGACTGCCCTGGAGATTTGGGCA
CCAGATTGATGCCAGTGCGAAGAAGTGCACAGTTAGAGCGCATTCGACAGCAACAGGAGGATAT
GAGACGTAGGCGTGAAGAAGAAGGGAAAAAGCAAGAACTTGACCTAAATTCTTCCATGAGACTT
AAGAAACTAGCTCAAATTCCTCCGAAGACTGGAATAGATAACCCTATATTTGACACAGAAGAAG
GAATTGTTTTAGAAAGTCCTCACTATGCTGTGAAAATATTAGAAGTTGAAGACTTGTTCTCTTC
ACTTAAACATATCCAGCACACTTTGGTTGATTCTCAGAGCCAGGAGGATATTTCACTGCTTTTA
CAGCTTGTACAAAATAGAGATTTTCAGAATGCATTCAAGATACACAATGCTGTCACAGTGCACA
TGAACAAGGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACAAGACCTTGTACAAGAGGTACA
AACTGTCTTAAAGCCAGTCCATCAGAAGGAAGGACAAGAATTAACTGCTTTGTTAAATGCTCCA
CATATTCAGGCACTTTTACTGGCCCATGATAAGGTTGCTGAGCAGGAAATGCAGCTAGAGCCCA
TAACAGATGAGAGAGTCTATGAAAGTATCGGCCATTATGGGGGAGAAACTGTAAAAATAGTTCG
TATAGAAAAGGCTCGGGATATTCCATTGGGTGCCACGGTTCGTAATGAGATGGATTCTGTCATC
ATAAGTCGGATAGTGAAAGGAGGCGCGGCAGAGAAGAGCGGGCTTCTGCACGAAGGAGACGAAG
TCCTAGAGATCAATGGCATCGAAATCCGGGGCAAGGACGTCAATGAGGTTTTTGACTTGTTGTC
TGATATGCACGGTACGTTGACATTTGTTCTGATTCCTAGTCAACAGATCAAGCCTCCTCCCGCC
AAAGAAACTGTAATCCACGTGAAAGCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTC
CCTGTCGAGAGTTAGGACTGTCTTTTCAAAAAGGAGATATACTTCATGTGATTAGTCAAGAAGA
TCCGAATTGGTGGCAGGCCTATAGAGAAGGAGACGAAGACAATCAGCCTCTAGCTGGACTTGTT
CCAGGGAAAAGTTTTCAGCAGCAAAGGGAAGCCATGAAGCAAACTATAGAAGAAGATAAGGAGC
CAGAAAAATCAGGAAAACTATGGTGTGCAAAGAAGAATAAAAAGAAGAGGAAAAAGGTTTTATA
TAATGCCAATAAAAATGATGATTATGACAATGAAGAGATCCTAACGTATGAAGAAATGTCACTT
TACCATCAGCCAGCAAATAGGAAAAGACCTATCATCTTGATTGGTCCCCAGAACTGTGGCCAGA
ATGAACTGCGCCAGAGACTCATGAACAAAGAAAAAGACCGCTTTGCATCTGCAGTTCCTCATAC
AACTCGGAATAGGCGAGACCACGAAGTAGCTGGGAGAGATTACCACTTTGTTTCACGGCAAGCA
TTTGAAGCAGATATAGCAGCTGGCAAGTTCATTGAACATGGTGAATTTGAGAAAAACCTGTATG
GAACCAGCATAGATTCTGTACGACAAGTAATCAACTCTGGCAAAATATGTCTTTTAAGTCTTCG
AGCACAGTCCTTGAAGACCCTCCGGAATTCAGATTTGAAACCATACATCATCTTCATTGCACCA
CCTTCACAAGAGAGACTTCGGGCGTTGTTAGCCAAGGAAGGCAAGAACCCAAAGCCGGAAGAAT
TAAGGGAGATTATTGAGAAGACGAGAGAGATGGAACAGAACAACGGCCACTACTTCGACACTGC
GATTGTGAATTCAGATCTTGATAAAGCCTATCAGGAACTGCTTAGGCTTATTAACAAACTGGAC
ACCGAGCCTCAGTGGGTGCCATCCACCTGGCTAAGGTGAAGGAAATGGCTGTTCTGTGTCATCA
TGATGAGCTTTATTTGATAAACCGCCAACAGGAAGATGGCCTTAACGCTGAGAGTTAATCTCCT
ACACTAGTGAGAAAGGCCCGTTAGGCAATTTGTACACAACACTTCCTGCACATTGCTTTAGGGG
GCCTTGACTTGTTTGGAGATTTAAAATGGAAACTTTCTTCAGAGCATTTCTGATTTATGTTTTC
ACCTTTCTTGCCTCTTGGTCAGATGTCTATAAAAAAAAATGTATATATATACGTAATATACCAT
TGTCTCACTTAGGTATGAATACTAACATTATTTAACATTTAACTTAAATGACTTCATGGGATTA
TTGAGAGAAGGGGCTGTGCTTCTGTGCACTGAGAATAACAGTATTTTCTTAAACTGATTTAGTC
ATCAGAAATATTTCT

hide sequence

RefSeq Acc Id:

XM_006240258 ⟹ XP_006240320

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	101,923,851 - 102,029,705 (+)	NCBI
Rnor_5.0	6	111,299,821 - 111,404,519 (+)	NCBI

Sequence:

show sequence

GGCGGACCCGCAGCGGCGGGGCTGTGGTGATCTTATCAACAGGTTCCTGGGAGCGCGGCGGGGG
AGGGGCGGCGGGTCTCGCACCCCCTCCCCGACGCGCCGCACGGAGAGGGTCCCCTGGGGAACCC
CAGGCTGAGCCGGGCGCCGCGGTGCCAGCCCAACCTTTGTCCCTTGGAGGAACGCTCCTGGTGT
GGTACGGGTTGGTTCTCTGGGCCGCGGACGCACCTTGGCGCGGTGGCGGGCCATCCCGCCGGAC
TTGCGGGGGCCTCGGCAGGGAGTCGTCTAGCTGCACCCAGGCCCGGAGTTCGCGGGTCCCGGGG
ACTCTCCCTCACCCCACCCCTGACTGGATCAGAGAACCAGCCTGGGAAACACTTTCCCATGGAA
GACGGAATGCAGCCAGCGTTCCTGTGACTGAGTCAGCTCCTGGTGTTCTGCTACTCATTGCGTT
CTTCAGATAAACAGTTCCTGCTTCCTTGTGACCGCTGCTAAAGTAAAGCCGGCGTCGTAGTGCT
TTCTCAGAACTTAGACGGAGGTTGTCCGTTGAACTTTGAAGTCTGTAAATGCTTGCAAGTTTTG
CAGAATAAGAAAGCTAACCTGAATATTGGGGGGAAAGACAGAGAAGAGAAACAAGGATTGAAGA
CGAGGTTTTCCAGTTTGCATAATATTTGCCTCATGGATACATTTCATAGCATTATTATGTGATA
TGAGAAGTTATTTTTCTTTTTTGAAGTAACATGGATTTTATACTACAGAATCAAGAGAATTGGC
TTTATAGGAAATTTTGATATATAAAAAGTGATAGAGGTTTTTATAGATAACCATGACAACATCG
TATATGAATGGGCATGTGACAGAGGAATCAGACAGCGGAATAAAAAATCTTGGTCTTGCATCAC
CAGAGGAACATCCGAAACACAGAGAGATGGCTGTTGACTGCCCTGGAGATTTGGGCACCAGATT
GATGCCAGTGCGAAGAAGTGCACAGTTAGAGCGCATTCGACAGCAACAGGAGGATATGAGACGT
AGGCGTGAAGAAGAAGGGAAAAAGCAAGAACTTGACCTAAATTCTTCCATGAGACTTAAGAAAC
TAGCTCAAATTCCTCCGAAGACTGGAATAGATAACCCTATATTTGACACAGAAGAAGGAATTGT
TTTAGAAAGTCCTCACTATGCTGTGAAAATATTAGAAGTTGAAGACTTGTTCTCTTCACTTAAA
CATATCCAGCACACTTTGGTTGATTCTCAGAGCCAGGAGGATATTTCACTGCTTTTACAGCTTG
TACAAAATAGAGATTTTCAGAATGCATTCAAGATACACAATGCTGTCACAGTGCACATGAACAA
GGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACAAGACCTTGTACAAGAGGTACAAACTGTC
TTAAAGCCAGTCCATCAGAAGGAAGGACAAGAATTAACTGCTTTGTTAAATGCTCCACATATTC
AGGCACTTTTACTGGCCCATGATAAGGTTGCTGAGCAGGAAATGCAGCTAGAGCCCATAACAGA
TGAGAGAGTCTATGAAAGTATCGGCCATTATGGGGGAGAAACTGTAAAAATAGTTCGTATAGAA
AAGGCTCGGGATATTCCATTGGGTGCCACGGTTCGTAATGAGATGGATTCTGTCATCATAAGTC
GGATAGTGAAAGGAGGCGCGGCAGAGAAGAGCGGGCTTCTGCACGAAGGAGACGAAGTCCTAGA
GATCAATGGCATCGAAATCCGGGGCAAGGACGTCAATGAGGTTTTTGACTTGTTGTCTGATATG
CACGGTACGTTGACATTTGTTCTGATTCCTAGTCAACAGATCAAGCCTCCTCCCGCCAAAGAAA
CTGTAATCCACGTGAAAGCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTCCCTGTCG
AGAGTTAGGACTGTCTTTTCAAAAAGGAGATATACTTCATGTGATTAGTCAAGAAGATCCGAAT
TGGTGGCAGGCCTATAGAGAAGGAGACGAAGACAATCAGCCTCTAGCTGGACTTGTTCCAGGGA
AAAGTTTTCAGCAGCAAAGGGAAGCCATGAAGCAAACTATAGAAGAAGATAAGGAGCCAGAAAA
ATCAGGAAAACTATGGTGTGCAAAGAAGAATAAAAAGAAGAGGAAAAAGGTTTTATATAATGCC
AATAAAAATGATGATTATGACAATGAAGAGATCCTAACGTATGAAGAAATGTCACTTTACCATC
AGCCAGCAAATAGGAAAAGACCTATCATCTTGATTGGTCCCCAGAACTGTGGCCAGAATGAACT
GCGCCAGAGACTCATGAACAAAGAAAAAGACCGCTTTGCATCTGCAGTTCCTCATACAACTCGG
AATAGGCGAGACCACGAAGTAGCTGGGAGAGATTACCACTTTGTTTCACGGCAAGCATTTGAAG
CAGATATAGCAGCTGGCAAGTTCATTGAACATGGTGAATTTGAGAAAAACCTGTATGGAACCAG
CATAGATTCTGTACGACAAGTAATCAACTCTGGCAAAATATGTCTTTTAAGTCTTCGAGCACAG
TCCTTGAAGACCCTCCGGAATTCAGATTTGAAACCATACATCATCTTCATTGCACCACCTTCAC
AAGAGAGACTTCGGGCGTTGTTAGCCAAGGAAGGCAAGAACCCAAAGCCGGAAGAATTAAGGGA
GATTATTGAGAAGACGAGAGAGATGGAACAGAACAACGGCCACTACTTCGACACTGCGATTGTG
AATTCAGATCTTGATAAAGCCTATCAGGAACTGCTTAGGCTTATTAACAAACTGGACACCGAGC
CTCAGTGGGTGCCATCCACCTGGCTAAGGTGAAGGAAATGGCTGTTCTGTGTCATCATGATGAG
CTTTATTTGATAAACCGCCAACAGGAAGATGGCCTTAACGCTGAGAGTTAATCTCCTACACTAG
TGAGAAAGGCCCGTTAGGCAATTTGTACACAACACTTCCTGCACATTGCTTTAGGGGGCCTTGA
CTTGTTTGGAGATTTAAAATGGAAACTTTCTTCAGAGCATTTCTGATTTATGTTTTCACCTTTC
TTGCCTCTTGGTCAGATGTCTATAAAAAAAAATGTATATATATACGTAATATACCATTGTCTCA
CTTAGGTATGAATACTAACATTATTTAACATTTAACTTAAATGACTTCATGGGATTATTGAGAG
AAGGGGCTGTGCTTCTGTGCACTGAGAATAACAGTATTTTCTTAAACTGATTTAGTCATCAGAA
ATATTTCTCTTAAAGAAAAGGAAAAAAAAGTGTCACTTTAGTTTGGAGCAACTTCTTAAGTTTA
AATTTATTGGTTAAACTTTTCATTCTGAAAAACATTCCATTAAAAATACTAGCTTTGTTAGGCA
TGGAAGCGCACGCCTTTAGTCCCAGCACTCAAGAGACAGAGGCAGGTGGATCTCTGAGTTCAAG
GCCAGCCTTGTCTTCAGAGTAACTTCCAGGCCAGTCAAGTCTGCACAGAGAAACCCTGTCTCGA
AAAACCGAAAGTAAAAATAATTAGTCCAGTCCTTCAGCTTGGACTTTGTGGCAGAGAATGCACA
ACCAGCAGCCGCCAGTGTAGTTACAAGTATACAACAGATGCTGACATTTTTAAAGATAGAATTT
TCTGAATTACTTTACTAAATTGTGGTGATTTGATAGCCTTGACTCCTTGCTCTGATAAAAAGTT
CATATAAACTATGCTGACCATTAAAATTTCTTCCTTATGATGCAAATATGTTTTATGTCAGTGA
AAGGATGTAACACATTTGACATTTTCTGCATTTTCATATCCGAGCACAGAATTATATCTATTAC
TGTGCTATATATGTAGGTGTCAACTGGAAATCTGTACTGTATATTGATATTTAATAGATTAATA
AATAGTGTGTTCTGCATTGGAATAGTTTTATACATACATACACACTGAGGAAATACCGTGACAA
CTGACTTTGAGATCAGGAGGCAGTCATTAAGCATTTTAGAAAAGAACATCGAAGGAAAGTTATT
AAGTGTATACGGACAAGTTTTTATCCTAACAGAGTCTTCCTCGTGACTGAAATACAGCAGCTTG
CTACACCTTAAATGTTCACACTAATGGAATTTTTGTACTGTCTGTATAGCTATAGCTTTAAAAT
TCAGTGTGTACAAATCCGCACAGAAAGTTAACTTATAGTCTTCTCAAGCCTTTAAGGAAAGTGT
TCTGTGTGACAACCAACCTCAAATGTGAATGTCTTGATTTTATGTAGCTACAGAATTTCATGTT
CCCAAAGCTAAACACTGGAATAACACTGACTTGTCACTTAGCACAAGCAGTGGTGTTAATGTCT
TGACAGTGCTGTTTGTGTCTGGTTTCTCTTCTGGATAATCTTATTGGAACAAATGTAGAGTATT
TGTGATGTCTTTTATGTTCAGTTTTGCATGGCTTTTGTATTGGCTGGCAAATGTGTCTTTTAGA
AATACTTTGAAAATAATCTTCCTTACGAATAAAGGCACAATCTTGAGGTGAAGGAAAGAATGCT
CTTCAGTCTCAAGTCTGAACACTCCCAGTTTACAGCAGGAAAAATGCAAGGTCCACACCCTTGT
CAGCATTGATGGTCAATTCACTCAGCACTTAGAGGATTAAATCTCTTCAGGTTTTCAACTGTTT
TTTTTCTCCTCAGGAATGAAAGGTAGTCTATGGTCAGTAGAGCTTTGTGATCTGCAGGCTGACT
GAAAATACTGACTGGTGAGACTTGGTGCACACCTGTAACCCTGTAGGAAGACCTAGAGTTTAAG
GCTGATCTGAGTTACATGAAACTGTCTCAAAAAATAAAGAAATAAAAATGTTTTTAAAAGAGAA
AGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGG
TCCCCAGCTCTGAAAAAAAAAAAAAAGAAAAAGAAAAAAGAGAAAGGATGCATGGATTGAAGGA
TGAACATTGGATTTGAGTAAAGTTTTAAGTTTCTGTCAATGCCACCTGGTGACAGTGGGGCTAT
GTGCCATCAAGACTCCCACACATGACCTTCCCAGCAGAGCCTATGAGATTCCCAAGGTTTGTGA
GATCCTATAATTTTCTTTACTTGTTAAGTAATGGTAGGATAGTGTATATCCTGAGCTTTTGTAA
ACCCTAATGTTTATGAATGCACTAATGCTCAACATAGTCTCTAAACAGTGAAAAGTTAAGCTAT
GCTAAAAAACAAAAACCCCTTGTTTTACATGTGATGATTGTACAGCCATTAGGGCCAATTCAAT
TTTCTATCCCTCTGTGGTTCTGATTGGAAACTGCTGTGCCAGGGAAGTCTTAGCCACTTAAAGA
AATGATATTGTGGTTGCTGGGAACACAGTTCAGTTGGTAGAGTATCGCCTAGCGTGCACAAAAC
CCTGGCTGTGCAGAAAGCCAGCATGGGTGTTCATGGGTGTAACCCAGCACTTGGAAATTGGAAA
GAGGAGGATCTGCAGGTCAAGGTTATCATCAGCTACATGAGACCCTGTCTCAAAAACAAAGTAG
GTCATACCAGCTAATGACATGTCCTCTGGAAATCCAAACAAGGAAGGACCTTCATTTCTTAGAG
GTTCTTACTTCAGAATAAATAGGATGTTAATATTTAGACTGGTCTAGATTGCTTTCTATGAAAA
TCTAGTGTGTGGATTGTTTTCCTTCTCTCATGGACTAAGGAGTAAATATTGATGAGGAATGATT
TGAATGTAATTTTTTCGAATGTGTGGAAAATATAAACCAGGGATTTATCCTTAATGAAGGTAGC
CACTCTGACATTTGTTGTTGATCTCCCTTTGTCTTGTCTCTGCACTCGTTTTGAGATGTCTTAC
TGCACAATGTATTATAAAAATAAAAAGTAAACCTATTATTTCAAATTGTAAAA

hide sequence

RefSeq Acc Id:

XM_008764773 ⟹ XP_008762995

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	101,923,675 - 102,029,705 (+)	NCBI

Sequence:

show sequence

AGGCTGGCGGTGGGGAGGGGGCGGGGACTGAAGGCTCCGAGGTGGGGGCAATCGGGAGTTTCTG
GATTCTTTATCCGGTGTTCGGAGGGCCGCCGGACGGAGGGTTGTGGCTTGGATCGCGCTGAGGA
GCGAATAAGAGCGAGCGGATCGGCCGCCGCCGGGTCACGGAGTTTTGCAGAATAAGAAAGCTAA
CCTGAATATTGGGGGGAAAGACAGAGAAGAGAAACAAGGATTGAAGACGAGGTTTTCCAGTTTG
CATAATATTTGCCTCATGGATACATTTCATAGCATTATTATGTGATATGAGAAGTTATTTTTCT
TTTTTGAAGTAACATGGATTTTATACTACAGAATCAAGAGAATTGGCTTTATAGGAAATTTTGA
TATATAAAAAGTGATAGAGGTTTTTATAGATAACCATGACAACATCGTATATGAATGGGCATGT
GACAGAGGAATCAGACAGCGGAATAAAAAATCTTGGTCTTGCATCACCAGAGGAACATCCGAAA
CACAGAGAGATGGCTGTTGACTGCCCTGGAGATTTGGGCACCAGATTGATGCCAGTGCGAAGAA
GTGCACAGTTAGAGCGCATTCGACAGCAACAGGAGGATATGAGACGTAGGCGTGAAGAAGAAGG
GAAAAAGCAAGAACTTGACCTAAATTCTTCCATGAGACTTAAGAAACTAGCTCAAATTCCTCCG
AAGACTGGAATAGATAACCCTATATTTGACACAGAAGAAGGAATTGTTTTAGAAAGTCCTCACT
ATGCTGTGAAAATATTAGAAGTTGAAGACTTGTTCTCTTCACTTAAACATATCCAGCACACTTT
GGTTGATTCTCAGAGCCAGGAGGATATTTCACTGCTTTTACAGCTTGTACAAAATAGAGATTTT
CAGAATGCATTCAAGATACACAATGCTGTCACAGTGCACATGAACAAGGCCAGCCCTCCGTTTC
CTCTTATCGCCAATGTACAAGACCTTGTACAAGAGGTACAAACTGTCTTAAAGCCAGTCCATCA
GAAGGAAGGACAAGAATTAACTGCTTTGTTAAATGCTCCACATATTCAGGCACTTTTACTGGCC
CATGATAAGGTTGCTGAGCAGGAAATGCAGCTAGAGCCCATAACAGATGAGAGAGTCTATGAAA
GTATCGGCCATTATGGGGGAGAAACTGTAAAAATAGTTCGTATAGAAAAGGCTCGGGATATTCC
ATTGGGTGCCACGGTTCGTAATGAGATGGATTCTGTCATCATAAGTCGGATAGTGAAAGGAGGC
GCGGCAGAGAAGAGCGGGCTTCTGCACGAAGGAGACGAAGTCCTAGAGATCAATGGCATCGAAA
TCCGGGGCAAGGACGTCAATGAGGTTTTTGACTTGTTGTCTGATATGCACGGTACGTTGACATT
TGTTCTGATTCCTAGTCAACAGATCAAGCCTCCTCCCGCCAAAGAAACTGTAATCCACGTGAAA
GCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTCCCTGTCGAGAGTTAGGACTGTCTT
TTCAAAAAGGAGATATACTTCATGTGATTAGTCAAGAAGATCCGAATTGGTGGCAGGCCTATAG
AGAAGGAGACGAAGACAATCAGCCTCTAGCTGGACTTGTTCCAGGGAAAAGTTTTCAGCAGCAA
AGGGAAGCCATGAAGCAAACTATAGAAGAAGATAAGGAGCCAGAAAAATCAGGAAAACTATGGT
GTGCAAAGAAGAATAAAAAGAAGAGGAAAAAGGTTTTATATAATGCCAATAAAAATGATGATTA
TGACAATGAAGAGATCCTAACGTATGAAGAAATGTCACTTTACCATCAGCCAGCAAATAGGAAA
AGACCTATCATCTTGATTGGTCCCCAGAACTGTGGCCAGAATGAACTGCGCCAGAGACTCATGA
ACAAAGAAAAAGACCGCTTTGCATCTGCAGTTCCTCATACAACTCGGAATAGGCGAGACCACGA
AGTAGCTGGGAGAGATTACCACTTTGTTTCACGGCAAGCATTTGAAGCAGATATAGCAGCTGGC
AAGTTCATTGAACATGGTGAATTTGAGAAAAACCTGTATGGAACCAGCATAGATTCTGTACGAC
AAGTAATCAACTCTGGCAAAATATGTCTTTTAAGTCTTCGAGCACAGTCCTTGAAGACCCTCCG
GAATTCAGATTTGAAACCATACATCATCTTCATTGCACCACCTTCACAAGAGAGACTTCGGGCG
TTGTTAGCCAAGGAAGGCAAGAACCCAAAGCCGGAAGAATTAAGGGAGATTATTGAGAAGACGA
GAGAGATGGAACAGAACAACGGCCACTACTTCGACACTGCGATTGTGAATTCAGATCTTGATAA
AGCCTATCAGGAACTGCTTAGGCTTATTAACAAACTGGACACCGAGCCTCAGTGGGTGCCATCC
ACCTGGCTAAGGTGAAGGAAATGGCTGTTCTGTGTCATCATGATGAGCTTTATTTGATAAACCG
CCAACAGGAAGATGGCCTTAACGCTGAGAGTTAATCTCCTACACTAGTGAGAAAGGCCCGTTAG
GCAATTTGTACACAACACTTCCTGCACATTGCTTTAGGGGGCCTTGACTTGTTTGGAGATTTAA
AATGGAAACTTTCTTCAGAGCATTTCTGATTTATGTTTTCACCTTTCTTGCCTCTTGGTCAGAT
GTCTATAAAAAAAAATGTATATATATACGTAATATACCATTGTCTCACTTAGGTATGAATACTA
ACATTATTTAACATTTAACTTAAATGACTTCATGGGATTATTGAGAGAAGGGGCTGTGCTTCTG
TGCACTGAGAATAACAGTATTTTCTTAAACTGATTTAGTCATCAGAAATATTTCTCTTAAAGAA
AAGGAAAAAAAAGTGTCACTTTAGTTTGGAGCAACTTCTTAAGTTTAAATTTATTGGTTAAACT
TTTCATTCTGAAAAACATTCCATTAAAAATACTAGCTTTGTTAGGCATGGAAGCGCACGCCTTT
AGTCCCAGCACTCAAGAGACAGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGCCTTGTCTTCAG
AGTAACTTCCAGGCCAGTCAAGTCTGCACAGAGAAACCCTGTCTCGAAAAACCGAAAGTAAAAA
TAATTAGTCCAGTCCTTCAGCTTGGACTTTGTGGCAGAGAATGCACAACCAGCAGCCGCCAGTG
TAGTTACAAGTATACAACAGATGCTGACATTTTTAAAGATAGAATTTTCTGAATTACTTTACTA
AATTGTGGTGATTTGATAGCCTTGACTCCTTGCTCTGATAAAAAGTTCATATAAACTATGCTGA
CCATTAAAATTTCTTCCTTATGATGCAAATATGTTTTATGTCAGTGAAAGGATGTAACACATTT
GACATTTTCTGCATTTTCATATCCGAGCACAGAATTATATCTATTACTGTGCTATATATGTAGG
TGTCAACTGGAAATCTGTACTGTATATTGATATTTAATAGATTAATAAATAGTGTGTTCTGCAT
TGGAATAGTTTTATACATACATACACACTGAGGAAATACCGTGACAACTGACTTTGAGATCAGG
AGGCAGTCATTAAGCATTTTAGAAAAGAACATCGAAGGAAAGTTATTAAGTGTATACGGACAAG
TTTTTATCCTAACAGAGTCTTCCTCGTGACTGAAATACAGCAGCTTGCTACACCTTAAATGTTC
ACACTAATGGAATTTTTGTACTGTCTGTATAGCTATAGCTTTAAAATTCAGTGTGTACAAATCC
GCACAGAAAGTTAACTTATAGTCTTCTCAAGCCTTTAAGGAAAGTGTTCTGTGTGACAACCAAC
CTCAAATGTGAATGTCTTGATTTTATGTAGCTACAGAATTTCATGTTCCCAAAGCTAAACACTG
GAATAACACTGACTTGTCACTTAGCACAAGCAGTGGTGTTAATGTCTTGACAGTGCTGTTTGTG
TCTGGTTTCTCTTCTGGATAATCTTATTGGAACAAATGTAGAGTATTTGTGATGTCTTTTATGT
TCAGTTTTGCATGGCTTTTGTATTGGCTGGCAAATGTGTCTTTTAGAAATACTTTGAAAATAAT
CTTCCTTACGAATAAAGGCACAATCTTGAGGTGAAGGAAAGAATGCTCTTCAGTCTCAAGTCTG
AACACTCCCAGTTTACAGCAGGAAAAATGCAAGGTCCACACCCTTGTCAGCATTGATGGTCAAT
TCACTCAGCACTTAGAGGATTAAATCTCTTCAGGTTTTCAACTGTTTTTTTTCTCCTCAGGAAT
GAAAGGTAGTCTATGGTCAGTAGAGCTTTGTGATCTGCAGGCTGACTGAAAATACTGACTGGTG
AGACTTGGTGCACACCTGTAACCCTGTAGGAAGACCTAGAGTTTAAGGCTGATCTGAGTTACAT
GAAACTGTCTCAAAAAATAAAGAAATAAAAATGTTTTTAAAAGAGAAAGGGGTTGGGGATTTAG
CTCAGTGGTAGAGTGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAA
AAAAAAAAAGAAAAAGAAAAAAGAGAAAGGATGCATGGATTGAAGGATGAACATTGGATTTGAG
TAAAGTTTTAAGTTTCTGTCAATGCCACCTGGTGACAGTGGGGCTATGTGCCATCAAGACTCCC
ACACATGACCTTCCCAGCAGAGCCTATGAGATTCCCAAGGTTTGTGAGATCCTATAATTTTCTT
TACTTGTTAAGTAATGGTAGGATAGTGTATATCCTGAGCTTTTGTAAACCCTAATGTTTATGAA
TGCACTAATGCTCAACATAGTCTCTAAACAGTGAAAAGTTAAGCTATGCTAAAAAACAAAAACC
CCTTGTTTTACATGTGATGATTGTACAGCCATTAGGGCCAATTCAATTTTCTATCCCTCTGTGG
TTCTGATTGGAAACTGCTGTGCCAGGGAAGTCTTAGCCACTTAAAGAAATGATATTGTGGTTGC
TGGGAACACAGTTCAGTTGGTAGAGTATCGCCTAGCGTGCACAAAACCCTGGCTGTGCAGAAAG
CCAGCATGGGTGTTCATGGGTGTAACCCAGCACTTGGAAATTGGAAAGAGGAGGATCTGCAGGT
CAAGGTTATCATCAGCTACATGAGACCCTGTCTCAAAAACAAAGTAGGTCATACCAGCTAATGA
CATGTCCTCTGGAAATCCAAACAAGGAAGGACCTTCATTTCTTAGAGGTTCTTACTTCAGAATA
AATAGGATGTTAATATTTAGACTGGTCTAGATTGCTTTCTATGAAAATCTAGTGTGTGGATTGT
TTTCCTTCTCTCATGGACTAAGGAGTAAATATTGATGAGGAATGATTTGAATGTAATTTTTTCG
AATGTGTGGAAAATATAAACCAGGGATTTATCCTTAATGAAGGTAGCCACTCTGACATTTGTTG
TTGATCTCCCTTTGTCTTGTCTCTGCACTCGTTTTGAGATGTCTTACTGCACAATGTATTATAA
AAATAAAAAGTAAACCTATTATTTCAAATTGTAAAA

hide sequence

RefSeq Acc Id:

XM_008764774 ⟹ XP_008762996

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	101,923,675 - 102,029,705 (+)	NCBI

Sequence:

show sequence

AGGCTGGCGGTGGGGAGGGGGCGGGGACTGAAGGCTCCGAGGTGGGGGCAATCGGGAGTTTCTG
GATTCTTTATCCGGTGTTCGGAGGGCCGCCGGACGGAGGGTTGTGGCTTGGATCGCGCTGAGGA
GCGAATAAGAGCGAGCGGATCGGCCGCCGCCGGGTCACGGAGTTTTGCAGAATAAGAAAGCTAA
CCTGAATATTGGGGGGAAAGACAGAGAAGAGAAACAAGGATTGAAGACGAGGTTTTCCAGTTTG
CATAATAGGAACATCCGAAACACAGAGAGATGGCTGTTGACTGCCCTGGAGATTTGGGCACCAG
ATTGATGCCAGTGCGAAGAAGTGCACAGTTAGAGCGCATTCGACAGCAACAGGAGGATATGAGA
CGTAGGCGTGAAGAAGAAGGGAAAAAGCAAGAACTTGACCTAAATTCTTCCATGAGACTTAAGA
AACTAGCTCAAATTCCTCCGAAGACTGGAATAGATAACCCTATATTTGACACAGAAGAAGGAAT
TGTTTTAGAAAGTCCTCACTATGCTGTGAAAATATTAGAAGTTGAAGACTTGTTCTCTTCACTT
AAACATATCCAGCACACTTTGGTTGATTCTCAGAGCCAGGAGGATATTTCACTGCTTTTACAGC
TTGTACAAAATAGAGATTTTCAGAATGCATTCAAGATACACAATGCTGTCACAGTGCACATGAA
CAAGGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACAAGACCTTGTACAAGAGGTACAAACT
GTCTTAAAGCCAGTCCATCAGAAGGAAGGACAAGAATTAACTGCTTTGTTAAATGCTCCACATA
TTCAGGCACTTTTACTGGCCCATGATAAGGTTGCTGAGCAGGAAATGCAGCTAGAGCCCATAAC
AGATGAGAGAGTCTATGAAAGTATCGGCCATTATGGGGGAGAAACTGTAAAAATAGTTCGTATA
GAAAAGGCTCGGGATATTCCATTGGGTGCCACGGTTCGTAATGAGATGGATTCTGTCATCATAA
GTCGGATAGTGAAAGGAGGCGCGGCAGAGAAGAGCGGGCTTCTGCACGAAGGAGACGAAGTCCT
AGAGATCAATGGCATCGAAATCCGGGGCAAGGACGTCAATGAGGTTTTTGACTTGTTGTCTGAT
ATGCACGGTACGTTGACATTTGTTCTGATTCCTAGTCAACAGATCAAGCCTCCTCCCGCCAAAG
AAACTGTAATCCACGTGAAAGCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTCCCTG
TCGAGAGTTAGGACTGTCTTTTCAAAAAGGAGATATACTTCATGTGATTAGTCAAGAAGATCCG
AATTGGTGGCAGGCCTATAGAGAAGGAGACGAAGACAATCAGCCTCTAGCTGGACTTGTTCCAG
GGAAAAGTTTTCAGCAGCAAAGGGAAGCCATGAAGCAAACTATAGAAGAAGATAAGGAGCCAGA
AAAATCAGGAAAACTATGGTGTGCAAAGAAGAATAAAAAGAAGAGGAAAAAGGTTTTATATAAT
GCCAATAAAAATGATGATTATGACAATGAAGAGATCCTAACGTATGAAGAAATGTCACTTTACC
ATCAGCCAGCAAATAGGAAAAGACCTATCATCTTGATTGGTCCCCAGAACTGTGGCCAGAATGA
ACTGCGCCAGAGACTCATGAACAAAGAAAAAGACCGCTTTGCATCTGCAGTTCCTCATACAACT
CGGAATAGGCGAGACCACGAAGTAGCTGGGAGAGATTACCACTTTGTTTCACGGCAAGCATTTG
AAGCAGATATAGCAGCTGGCAAGTTCATTGAACATGGTGAATTTGAGAAAAACCTGTATGGAAC
CAGCATAGATTCTGTACGACAAGTAATCAACTCTGGCAAAATATGTCTTTTAAGTCTTCGAGCA
CAGTCCTTGAAGACCCTCCGGAATTCAGATTTGAAACCATACATCATCTTCATTGCACCACCTT
CACAAGAGAGACTTCGGGCGTTGTTAGCCAAGGAAGGCAAGAACCCAAAGCCGGAAGAATTAAG
GGAGATTATTGAGAAGACGAGAGAGATGGAACAGAACAACGGCCACTACTTCGACACTGCGATT
GTGAATTCAGATCTTGATAAAGCCTATCAGGAACTGCTTAGGCTTATTAACAAACTGGACACCG
AGCCTCAGTGGGTGCCATCCACCTGGCTAAGGTGAAGGAAATGGCTGTTCTGTGTCATCATGAT
GAGCTTTATTTGATAAACCGCCAACAGGAAGATGGCCTTAACGCTGAGAGTTAATCTCCTACAC
TAGTGAGAAAGGCCCGTTAGGCAATTTGTACACAACACTTCCTGCACATTGCTTTAGGGGGCCT
TGACTTGTTTGGAGATTTAAAATGGAAACTTTCTTCAGAGCATTTCTGATTTATGTTTTCACCT
TTCTTGCCTCTTGGTCAGATGTCTATAAAAAAAAATGTATATATATACGTAATATACCATTGTC
TCACTTAGGTATGAATACTAACATTATTTAACATTTAACTTAAATGACTTCATGGGATTATTGA
GAGAAGGGGCTGTGCTTCTGTGCACTGAGAATAACAGTATTTTCTTAAACTGATTTAGTCATCA
GAAATATTTCTCTTAAAGAAAAGGAAAAAAAAGTGTCACTTTAGTTTGGAGCAACTTCTTAAGT
TTAAATTTATTGGTTAAACTTTTCATTCTGAAAAACATTCCATTAAAAATACTAGCTTTGTTAG
GCATGGAAGCGCACGCCTTTAGTCCCAGCACTCAAGAGACAGAGGCAGGTGGATCTCTGAGTTC
AAGGCCAGCCTTGTCTTCAGAGTAACTTCCAGGCCAGTCAAGTCTGCACAGAGAAACCCTGTCT
CGAAAAACCGAAAGTAAAAATAATTAGTCCAGTCCTTCAGCTTGGACTTTGTGGCAGAGAATGC
ACAACCAGCAGCCGCCAGTGTAGTTACAAGTATACAACAGATGCTGACATTTTTAAAGATAGAA
TTTTCTGAATTACTTTACTAAATTGTGGTGATTTGATAGCCTTGACTCCTTGCTCTGATAAAAA
GTTCATATAAACTATGCTGACCATTAAAATTTCTTCCTTATGATGCAAATATGTTTTATGTCAG
TGAAAGGATGTAACACATTTGACATTTTCTGCATTTTCATATCCGAGCACAGAATTATATCTAT
TACTGTGCTATATATGTAGGTGTCAACTGGAAATCTGTACTGTATATTGATATTTAATAGATTA
ATAAATAGTGTGTTCTGCATTGGAATAGTTTTATACATACATACACACTGAGGAAATACCGTGA
CAACTGACTTTGAGATCAGGAGGCAGTCATTAAGCATTTTAGAAAAGAACATCGAAGGAAAGTT
ATTAAGTGTATACGGACAAGTTTTTATCCTAACAGAGTCTTCCTCGTGACTGAAATACAGCAGC
TTGCTACACCTTAAATGTTCACACTAATGGAATTTTTGTACTGTCTGTATAGCTATAGCTTTAA
AATTCAGTGTGTACAAATCCGCACAGAAAGTTAACTTATAGTCTTCTCAAGCCTTTAAGGAAAG
TGTTCTGTGTGACAACCAACCTCAAATGTGAATGTCTTGATTTTATGTAGCTACAGAATTTCAT
GTTCCCAAAGCTAAACACTGGAATAACACTGACTTGTCACTTAGCACAAGCAGTGGTGTTAATG
TCTTGACAGTGCTGTTTGTGTCTGGTTTCTCTTCTGGATAATCTTATTGGAACAAATGTAGAGT
ATTTGTGATGTCTTTTATGTTCAGTTTTGCATGGCTTTTGTATTGGCTGGCAAATGTGTCTTTT
AGAAATACTTTGAAAATAATCTTCCTTACGAATAAAGGCACAATCTTGAGGTGAAGGAAAGAAT
GCTCTTCAGTCTCAAGTCTGAACACTCCCAGTTTACAGCAGGAAAAATGCAAGGTCCACACCCT
TGTCAGCATTGATGGTCAATTCACTCAGCACTTAGAGGATTAAATCTCTTCAGGTTTTCAACTG
TTTTTTTTCTCCTCAGGAATGAAAGGTAGTCTATGGTCAGTAGAGCTTTGTGATCTGCAGGCTG
ACTGAAAATACTGACTGGTGAGACTTGGTGCACACCTGTAACCCTGTAGGAAGACCTAGAGTTT
AAGGCTGATCTGAGTTACATGAAACTGTCTCAAAAAATAAAGAAATAAAAATGTTTTTAAAAGA
GAAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCGCAAGGCCCTGGGTT
CGGTCCCCAGCTCTGAAAAAAAAAAAAAAGAAAAAGAAAAAAGAGAAAGGATGCATGGATTGAA
GGATGAACATTGGATTTGAGTAAAGTTTTAAGTTTCTGTCAATGCCACCTGGTGACAGTGGGGC
TATGTGCCATCAAGACTCCCACACATGACCTTCCCAGCAGAGCCTATGAGATTCCCAAGGTTTG
TGAGATCCTATAATTTTCTTTACTTGTTAAGTAATGGTAGGATAGTGTATATCCTGAGCTTTTG
TAAACCCTAATGTTTATGAATGCACTAATGCTCAACATAGTCTCTAAACAGTGAAAAGTTAAGC
TATGCTAAAAAACAAAAACCCCTTGTTTTACATGTGATGATTGTACAGCCATTAGGGCCAATTC
AATTTTCTATCCCTCTGTGGTTCTGATTGGAAACTGCTGTGCCAGGGAAGTCTTAGCCACTTAA
AGAAATGATATTGTGGTTGCTGGGAACACAGTTCAGTTGGTAGAGTATCGCCTAGCGTGCACAA
AACCCTGGCTGTGCAGAAAGCCAGCATGGGTGTTCATGGGTGTAACCCAGCACTTGGAAATTGG
AAAGAGGAGGATCTGCAGGTCAAGGTTATCATCAGCTACATGAGACCCTGTCTCAAAAACAAAG
TAGGTCATACCAGCTAATGACATGTCCTCTGGAAATCCAAACAAGGAAGGACCTTCATTTCTTA
GAGGTTCTTACTTCAGAATAAATAGGATGTTAATATTTAGACTGGTCTAGATTGCTTTCTATGA
AAATCTAGTGTGTGGATTGTTTTCCTTCTCTCATGGACTAAGGAGTAAATATTGATGAGGAATG
ATTTGAATGTAATTTTTTCGAATGTGTGGAAAATATAAACCAGGGATTTATCCTTAATGAAGGT
AGCCACTCTGACATTTGTTGTTGATCTCCCTTTGTCTTGTCTCTGCACTCGTTTTGAGATGTCT
TACTGCACAATGTATTATAAAAATAAAAAGTAAACCTATTATTTCAAATTGTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101504	(Get FASTA)	NCBI Sequence Viewer
	XP_006240320	(Get FASTA)	NCBI Sequence Viewer
	XP_008762995	(Get FASTA)	NCBI Sequence Viewer
	XP_008762996	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68247	(Get FASTA)	NCBI Sequence Viewer
	B4F7E7	(Get FASTA)	NCBI Sequence Viewer
	EDM03700	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101504 ⟸ NM_001108034

- UniProtKB:

B4F7E7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTSYMNGHVTEESDSGIKNLGLASPEEHPKHREMAVDCPGDLGTRLMPVRRSAQLERIRQQQE
DMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNPIFDTEEGIVLESPHYAVKILEVEDLF
SSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMNKASPPFPLIANVQDLVQE
VQTVLKPVHQKEGQELTALLNAPHIQALLLAHDKVAEQEMQLEPITDERVYESIGHYGGETVKI
VRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL
LSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQ
EDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKV
LYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVP
HTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLS
LRAQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFD
TAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR

hide sequence

RefSeq Acc Id:	XP_006240320 ⟸ XM_006240258
- Peptide Label:	isoform X1
- UniProtKB:	B4F7E7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTSYMNGHVTEESDSGIKNLGLASPEEHPKHREMAVDCPGDLGTRLMPVRRSAQLERIRQQQE DMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNPIFDTEEGIVLESPHYAVKILEVEDLF SSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMNKASPPFPLIANVQDLVQE VQTVLKPVHQKEGQELTALLNAPHIQALLLAHDKVAEQEMQLEPITDERVYESIGHYGGETVKI VRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL LSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQ EDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKV LYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVP HTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLS LRAQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFD TAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR hide sequence

RefSeq Acc Id:	XP_008762995 ⟸ XM_008764773
- Peptide Label:	isoform X1
- UniProtKB:	B4F7E7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTSYMNGHVTEESDSGIKNLGLASPEEHPKHREMAVDCPGDLGTRLMPVRRSAQLERIRQQQE DMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNPIFDTEEGIVLESPHYAVKILEVEDLF SSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMNKASPPFPLIANVQDLVQE VQTVLKPVHQKEGQELTALLNAPHIQALLLAHDKVAEQEMQLEPITDERVYESIGHYGGETVKI VRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL LSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQ EDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKV LYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVP HTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLS LRAQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFD TAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR hide sequence

RefSeq Acc Id:

XP_008762996 ⟸ XM_008764774

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAVDCPGDLGTRLMPVRRSAQLERIRQQQEDMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTG
IDNPIFDTEEGIVLESPHYAVKILEVEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNA
FKIHNAVTVHMNKASPPFPLIANVQDLVQEVQTVLKPVHQKEGQELTALLNAPHIQALLLAHDK
VAEQEMQLEPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAE
KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHF
DYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREA
MKQTIEEDKEPEKSGKLWCAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPI
ILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFI
EHGEFEKNLYGTSIDSVRQVINSGKICLLSLRAQSLKTLRNSDLKPYIIFIAPPSQERLRALLA
KEGKNPKPEELREIIEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWL
R

hide sequence

RefSeq Acc Id:

ENSRNOP00000070368 ⟸ ENSRNOT00000092157

RefSeq Acc Id:

ENSRNOP00000012005 ⟸ ENSRNOT00000012005

Protein Domains

Guanylate kinase-like L27 PDZ SH3

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694694

Promoter ID:

EPDNEW_R5211

Type:

initiation region

Name:

Mpp5_1

Description:

membrane palmitoylated protein 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	101,923,740 - 101,923,800	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308071	AgrOrtholog
Ensembl Genes	ENSRNOG00000008788	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000012005	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000070368	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000012005	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000092157	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot
InterPro	GK/Ca_channel_bsu	UniProtKB/Swiss-Prot
	Guanylate_kin-like_dom	UniProtKB/Swiss-Prot
	Guanylate_kinase_CS	UniProtKB/Swiss-Prot
	L27_C	UniProtKB/Swiss-Prot
	L27_dom	UniProtKB/Swiss-Prot
	L27_dom_sf	UniProtKB/Swiss-Prot
	L27_N	UniProtKB/Swiss-Prot
	MPP5	UniProtKB/Swiss-Prot
	MPP5_SH3	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	PDZ_sf	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
KEGG Report	rno:314259	UniProtKB/Swiss-Prot
NCBI Gene	314259	ENTREZGENE
PANTHER	PTHR23122:SF14	UniProtKB/Swiss-Prot
Pfam	Guanylate_kin	UniProtKB/Swiss-Prot
	L27	UniProtKB/Swiss-Prot
	L27_N	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	SH3_2	UniProtKB/Swiss-Prot
PhenoGen	Mpp5	PhenoGen
PROSITE	GUANYLATE_KINASE_1	UniProtKB/Swiss-Prot
	GUANYLATE_KINASE_2	UniProtKB/Swiss-Prot
	L27	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
SMART	GuKc	UniProtKB/Swiss-Prot
	L27	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF101288	UniProtKB/Swiss-Prot
	SSF50044	UniProtKB/Swiss-Prot
	SSF50156	UniProtKB/Swiss-Prot
	SSF52540	UniProtKB/Swiss-Prot
UniGene	Rn.224696	ENTREZGENE
UniProt	B4F7E7	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-14	Mpp5	membrane palmitoylated protein 5	Mpp5	membrane protein, palmitoylated 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-11-20	Mpp5	membrane protein, palmitoylated 5	Mpp5	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mpp5	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	Mpp5_predicted	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mpp5_predicted	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI