Cmtm6 (CKLF-like MARVEL transmembrane domain containing 6) - Rat Genome Database

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Gene: Cmtm6 (CKLF-like MARVEL transmembrane domain containing 6) Rattus norvegicus
Analyze
Symbol: Cmtm6
Name: CKLF-like MARVEL transmembrane domain containing 6
RGD ID: 1307765
Description: Predicted to be involved in endocytic recycling; protein transport; and regulation of protein stability. Predicted to be located in early endosome membrane; plasma membrane; and recycling endosome membrane. Predicted to be integral component of membrane. Orthologous to human CMTM6 (CKLF like MARVEL transmembrane domain containing 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chemokine-like factor super family 6; chemokine-like factor superfamily 6; CKLF-like MARVEL transmembrane domain-containing protein 6; Cklfsf6; Da2-17; LOC316035; LRRGT00102
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28114,422,681 - 114,441,034 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8114,422,921 - 114,441,033 (+)Ensembl
Rnor_6.08122,789,208 - 122,807,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,789,453 - 122,807,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08122,101,291 - 122,119,647 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,149,810 - 119,165,515 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18119,169,845 - 119,185,251 (+)NCBI
Celera8113,669,648 - 113,685,301 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:23376485   PMID:28813410   PMID:28813417  


Genomics

Comparative Map Data
Cmtm6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28114,422,681 - 114,441,034 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8114,422,921 - 114,441,033 (+)Ensembl
Rnor_6.08122,789,208 - 122,807,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,789,453 - 122,807,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08122,101,291 - 122,119,647 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,149,810 - 119,165,515 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18119,169,845 - 119,185,251 (+)NCBI
Celera8113,669,648 - 113,685,301 (+)NCBICelera
Cytogenetic Map8q32NCBI
CMTM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,481,312 - 32,502,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl332,481,312 - 32,502,852 (-)EnsemblGRCh38hg38GRCh38
GRCh37332,522,804 - 32,544,344 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,497,808 - 32,519,407 (-)NCBINCBI36hg18NCBI36
Build 34332,497,807 - 32,519,407NCBI
Celera332,459,890 - 32,481,492 (-)NCBI
Cytogenetic Map3p22.3NCBI
HuRef332,458,095 - 32,479,708 (-)NCBIHuRef
CHM1_1332,472,791 - 32,494,401 (-)NCBICHM1_1
T2T-CHM13v2.0332,478,266 - 32,499,821 (-)NCBI
Cmtm6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,560,230 - 114,578,415 (+)NCBIGRCm39mm39
GRCm39 Ensembl9114,560,184 - 114,578,412 (+)Ensembl
GRCm389114,731,157 - 114,749,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,731,116 - 114,749,344 (+)EnsemblGRCm38mm10GRCm38
MGSCv379114,640,321 - 114,658,461 (+)NCBIGRCm37mm9NCBIm37
MGSCv369114,579,901 - 114,598,041 (+)NCBImm8
Celera9115,206,264 - 115,224,671 (+)NCBICelera
Cytogenetic Map9F3NCBI
Cmtm6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543023,845,977 - 23,866,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543023,845,977 - 23,866,408 (-)NCBIChiLan1.0ChiLan1.0
CMTM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1332,713,639 - 32,735,745 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,713,639 - 32,735,745 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0332,399,143 - 32,420,753 (-)NCBIMhudiblu_PPA_v0panPan3
CMTM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,295,800 - 12,315,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,295,876 - 12,315,367 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2312,270,601 - 12,290,626 (+)NCBI
ROS_Cfam_1.02312,586,876 - 12,608,821 (+)NCBI
ROS_Cfam_1.0 Ensembl2312,586,949 - 12,608,824 (+)Ensembl
UMICH_Zoey_3.12312,388,246 - 12,408,284 (+)NCBI
UNSW_CanFamBas_1.02312,530,372 - 12,552,290 (+)NCBI
UU_Cfam_GSD_1.02312,535,572 - 12,555,593 (+)NCBI
Cmtm6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,829,824 - 189,851,703 (-)NCBI
SpeTri2.0NW_00493647322,968,397 - 22,990,273 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMTM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11318,461,515 - 18,485,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,262,461 - 20,287,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CMTM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11576,980,942 - 77,005,174 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1576,973,475 - 77,005,095 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604150,335,464 - 50,360,023 (-)NCBIVero_WHO_p1.0
Cmtm6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478810,547,530 - 10,575,610 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D8Rat200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,435,431 - 114,435,660 (+)MAPPERmRatBN7.2
Rnor_6.08122,801,958 - 122,802,186NCBIRnor6.0
Rnor_5.08122,114,045 - 122,114,273UniSTSRnor5.0
RGSC_v3.48119,162,559 - 119,162,788RGDRGSC3.4
RGSC_v3.48119,162,560 - 119,162,788UniSTSRGSC3.4
RGSC_v3.18119,182,296 - 119,182,525RGD
Celera8113,682,346 - 113,682,574UniSTS
SHRSP x BN Map876.2399RGD
SHRSP x BN Map876.2399UniSTS
Cytogenetic Map8q32UniSTS
RH127860  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,440,605 - 114,440,796 (+)MAPPERmRatBN7.2
mRatBN7.2284,242,732 - 84,242,920 (+)MAPPERmRatBN7.2
Rnor_6.0286,296,869 - 86,297,056NCBIRnor6.0
Rnor_6.08122,807,132 - 122,807,322NCBIRnor6.0
Rnor_5.08122,119,219 - 122,119,409UniSTSRnor5.0
Rnor_5.02105,970,688 - 105,970,875UniSTSRnor5.0
RGSC_v3.4285,685,105 - 85,685,292UniSTSRGSC3.4
RGSC_v3.48119,167,734 - 119,167,924UniSTSRGSC3.4
Celera8113,687,520 - 113,687,710UniSTS
Celera279,697,623 - 79,697,810UniSTS
Cytogenetic Map8q32UniSTS
RH129085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,440,773 - 114,440,969 (+)MAPPERmRatBN7.2
mRatBN7.2284,242,897 - 84,243,095 (+)MAPPERmRatBN7.2
Rnor_6.0286,297,034 - 86,297,231NCBIRnor6.0
Rnor_6.08122,807,300 - 122,807,495NCBIRnor6.0
Rnor_5.08122,119,387 - 122,119,582UniSTSRnor5.0
Rnor_5.02105,970,853 - 105,971,050UniSTSRnor5.0
RGSC_v3.4285,685,270 - 85,685,467UniSTSRGSC3.4
RGSC_v3.48119,167,902 - 119,168,097UniSTSRGSC3.4
Celera8113,687,688 - 113,687,883UniSTS
Celera279,697,788 - 79,697,985UniSTS
Cytogenetic Map8q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8112834440118649220Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:685
Count of miRNA genes:301
Interacting mature miRNAs:390
Transcripts:ENSRNOT00000014585
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 57 41 19 41 4 4 63 35 41 11 4
Low 2 4 7 11 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014585   ⟹   ENSRNOP00000014585
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,422,921 - 114,441,033 (+)Ensembl
Rnor_6.0 Ensembl8122,789,453 - 122,807,560 (+)Ensembl
RefSeq Acc Id: NM_001007802   ⟹   NP_001007803
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28114,422,681 - 114,438,387 (+)NCBI
Rnor_6.08122,789,208 - 122,804,913 (+)NCBI
Rnor_5.08122,101,291 - 122,119,647 (+)NCBI
RGSC_v3.48119,149,810 - 119,165,515 (+)RGD
Celera8113,669,648 - 113,685,301 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243969   ⟹   XP_006244031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28114,422,922 - 114,441,034 (+)NCBI
Rnor_6.08122,789,443 - 122,807,560 (+)NCBI
Rnor_5.08122,101,291 - 122,119,647 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001007803 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244031 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI07931 (Get FASTA)   NCBI Sequence Viewer  
  AAP92663 (Get FASTA)   NCBI Sequence Viewer  
  AAQ91058 (Get FASTA)   NCBI Sequence Viewer  
  EDL76982 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001007803   ⟸   NM_001007802
- UniProtKB: Q7TNZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244031   ⟸   XM_006243969
- Peptide Label: isoform X1
- UniProtKB: Q7TNZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000014585   ⟸   ENSRNOT00000014585
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNZ9-F1-model_v2 AlphaFold Q7TNZ9 1-183 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696355
Promoter ID:EPDNEW_R6880
Type:initiation region
Name:Cmtm6_1
Description:CKLF-like MARVEL transmembrane domain containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08122,789,461 - 122,789,521EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307765 AgrOrtholog
BioCyc Gene G2FUF-28912 BioCyc
Ensembl Genes ENSRNOG00000010951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014585 ENTREZGENE
  ENSRNOP00000014585.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014585 ENTREZGENE
  ENSRNOT00000014585.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7130158 IMAGE-MGC_LOAD
InterPro Marvel UniProtKB/TrEMBL
KEGG Report rno:316035 UniProtKB/TrEMBL
MGC_CLONE MGC:124920 IMAGE-MGC_LOAD
NCBI Gene 316035 ENTREZGENE
Pfam MARVEL UniProtKB/TrEMBL
PhenoGen Cmtm6 PhenoGen
PROSITE MARVEL UniProtKB/TrEMBL
UniProt Q7TNZ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Cmtm6  CKLF-like MARVEL transmembrane domain containing 6  Cklfsf6  chemokine-like factor super family 6  Symbol and Name updated 1299863 APPROVED
2005-12-06 Cklfsf6  chemokine-like factor super family 6  Cklfsf6_predicted  chemokine-like factor super family 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cklfsf6_predicted  chemokine-like factor super family 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED