Cse1l (chromosome segregation 1 like)

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Gene: Cse1l (chromosome segregation 1 like) Rattus norvegicus

Analyze

Symbol:

Cse1l

Name:

chromosome segregation 1 like

RGD ID:

1307536

Description:

Predicted to localize to cytosol and nucleoplasm. Orthologous to human CSE1L (chromosome segregation 1 like); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

chromosome segregation 1-like; chromosome segregation 1-like (S. cerevisiae) ; CSE1 chromosome segregation 1 like; CSE1 chromosome segregation 1-like; CSE1 chromosome segregation 1-like (yeast); exportin-2; LOC362273

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSE1L (chromosome segregation 1 like)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cse1l (chromosome segregation 1-like (S. cerevisiae))	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Cse1l (chromosome segregation 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSE1L (chromosome segregation 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSE1L (chromosome segregation 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cse1l (chromosome segregation 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSE1L (chromosome segregation 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CSE1L (chromosome segregation 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cse1l (chromosome segregation 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CSE1L (chromosome segregation 1 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Cse1l (chromosome segregation 1-like (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	cse1l (CSE1 chromosome segregation 1-like (yeast))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	CSE1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Cse1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	xpo-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	155,641,104 - 155,678,866 (+)	NCBI
Rnor_6.0 Ensembl	3	163,664,136 - 163,702,060 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	163,664,074 - 163,702,074 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	169,824,936 - 169,862,578 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	158,061,678 - 158,100,065 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	157,967,713 - 158,005,990 (+)	NCBI
Celera	3	154,222,746 - 154,260,352 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 26 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4-amino-2,6-dinitrotoluene (EXP)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

buspirone (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

choline (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dieldrin (EXP)

dioxygen (ISO)

disulfiram (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

kojic acid (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

nefazodone (EXP)

nickel dichloride (EXP)

p-menthan-3-ol (ISO)

pentachlorophenol (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

S-butyl-DL-homocysteine (S,R)-sulfoximine (EXP)

silicon dioxide (ISO)

sirolimus (ISO)

sunitinib (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetrachlorohydroquinone (ISO)

thiophenes (ISO)

tolcapone (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

tunicamycin (ISO)

ursodeoxycholic acid (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein export from nucleus (IBA)

protein import into nucleus (IBA)

Cellular Component

cytosol (IBA,ISO)

nuclear envelope (IBA)

nucleoplasm (IEA,ISO)

Molecular Function

nuclear export signal receptor activity (IBA)

protein binding (ISO)

small GTPase binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

p53 signaling pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19056867	PMID:19946888	PMID:20458337	PMID:24625528	PMID:25002582

Genomics

Comparative Map Data

Cse1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	155,641,104 - 155,678,866 (+)	NCBI
Rnor_6.0 Ensembl	3	163,664,136 - 163,702,060 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	163,664,074 - 163,702,074 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	169,824,936 - 169,862,578 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	158,061,678 - 158,100,065 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	157,967,713 - 158,005,990 (+)	NCBI
Celera	3	154,222,746 - 154,260,352 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

CSE1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	20	49,046,246 - 49,096,960 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	20	49,046,312 - 49,096,949 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	20	47,662,849 - 47,713,486 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	47,096,245 - 47,146,893 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	20	44,367,453 - 44,418,132 (+)	NCBI
Cytogenetic Map	20	q13.13	NCBI
HuRef	20	44,412,660 - 44,463,086 (+)	NCBI		HuRef
CHM1_1	20	47,567,020 - 47,617,675 (+)	NCBI		CHM1_1

Cse1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	166,747,961 - 166,788,309 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	166,747,960 - 166,788,309 (+)	Ensembl
GRCm38	2	166,906,041 - 166,946,389 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	166,906,040 - 166,946,389 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	166,731,596 - 166,771,889 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	166,597,301 - 166,637,468 (+)	NCBI			mm8
Celera	2	172,845,501 - 172,885,798 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	87.22	NCBI

Cse1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	9,013,297 - 9,040,813 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	9,012,953 - 9,053,852 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSE1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	20	46,452,485 - 46,502,202 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	46,452,485 - 46,502,207 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	20	45,386,124 - 45,436,283 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CSE1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	24	35,759,598 - 35,805,769 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	24	35,759,556 - 35,806,090 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cse1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936514	5,112,961 - 5,157,584 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSE1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	50,744,910 - 50,797,548 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	50,744,896 - 50,796,835 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	57,095,214 - 57,256,765 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSE1L
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	14,891,230 - 14,938,425 (-)	NCBI
ChlSab1.1 Ensembl	2	14,891,665 - 14,938,377 (-)	Ensembl

Cse1l
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624790	6,238,702 - 6,280,456 (-)	NCBI

Position Markers

YWHAB

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	163,684,953 - 163,685,054	NCBI	Rnor6.0
Rnor_6.0	3	163,696,038 - 163,696,139	NCBI	Rnor6.0
Rnor_5.0	3	169,845,819 - 169,845,920	UniSTS	Rnor5.0
RGSC_v3.4	3	158,082,494 - 158,082,595	UniSTS	RGSC3.4
RGSC_v3.4	3	158,094,043 - 158,094,144	UniSTS	RGSC3.4
Celera	3	154,243,565 - 154,243,666	UniSTS
Cytogenetic Map	3	q42	UniSTS

RH125698

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	163,701,883 - 163,702,042	NCBI	Rnor6.0
Rnor_5.0	3	169,862,390 - 169,862,549	UniSTS	Rnor5.0
RGSC_v3.4	3	158,099,888 - 158,100,047	UniSTS	RGSC3.4
Celera	3	154,260,175 - 154,260,334	UniSTS
Cytogenetic Map	3	q42	UniSTS

BE109633

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	163,701,474 - 163,701,582	NCBI	Rnor6.0
Rnor_5.0	3	169,861,981 - 169,862,089	UniSTS	Rnor5.0
RGSC_v3.4	3	158,099,479 - 158,099,587	UniSTS	RGSC3.4
Celera	3	154,259,766 - 154,259,874	UniSTS
RH 3.4 Map	3	1470.7	UniSTS
Cytogenetic Map	3	q42	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	45406058	177699992	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	58204463	170534769	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	61241033	165369047	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	99465522	168732722	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	103141814	176418101	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	103141814	176418101	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	103141814	176418101	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	103141944	170934860	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	119471263	164471263	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	125848628	170848628	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	126575595	165355668	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	128986468	173986468	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	129787213	177699992	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	130006659	175006659	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	132875075	176418101	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	136876155	170935007	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	138374177	177699992	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	138374177	177699992	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	139578365	177699992	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	146232777	177699992	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	148034701	177699992	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	148348517	171467264	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	150368003	177699992	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	153381237	174632112	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	153381237	174632112	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	153381237	174632112	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	153381237	174632112	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	153381237	174632112	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	153381237	174632112	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	153381237	174632112	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	153412455	165355668	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	153412455	170534769	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	153412455	177699992	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	153918022	177699992	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	156381661	176418101	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	52
Interacting mature miRNAs:	60
Transcripts:	ENSRNOT00000010210
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000010210 ⟹ ENSRNOP00000010210

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	163,664,136 - 163,702,060 (+)	Ensembl

RefSeq Acc Id:

NM_001108607 ⟹ NP_001102077

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	155,641,179 - 155,678,855 (+)	NCBI
Rnor_6.0	3	163,664,136 - 163,702,060 (+)	NCBI
Rnor_5.0	3	169,824,936 - 169,862,578 (+)	NCBI
RGSC_v3.4	3	158,061,678 - 158,100,065 (+)	RGD
Celera	3	154,222,746 - 154,260,352 (+)	RGD

Sequence:

show sequence

GGCGGAGCAGCCGCTGGAGTGGGTAGTGTCGGCTTGTAGCTCTCGCTTGGGATTCCCTCCTCGG
TCTCGGCGTCCCCACGAGATTCAGAGTCATGGAGCTCAGCGATGCCAATCTTCAGACACTGACA
GAGTATTTAAAGAAAACCCTGGATCCTGACCCTGCCATCAGACGGCCAGCTGAGAAATTTCTCG
AATCTGTAGAAGGAAATCAGAATTACCCACTGTTGCTTTTAACATTATTGGAAAAGTCACAGGA
TAATGTCATTAAAGTATGTGCTTCAGTAACCTTCAAGAACTATATTAAAAGGAATTGGAGAATT
GTTGAAGATGAACCAAACAAAATTTGTGAAGCTGATCGAGTAGCTATAAAAGCCAACATAGTGC
ACCTGATGCTGAGCAGCCCAGAGCAGATCCAGAAGCAGCTGAGTGATGCTATTAGCATTGTTGG
CAGAGAAGATTTCCCTCAAAAATGGCCGGACTTGCTGACAGAAATGGTGAATCGCTTTCAGAGT
GGAGATTTCCATGTCATTAATGGAGTCCTGCGTACAGCGCATTCACTGTTTAAAAGATACCGGC
ATGAGTTTAAGTCAAATGAGCTGTGGACTGAGATTAAACTTGTCTTGGATGCCTTTGCTCTGCC
TTTGACTAATTTATTTAAGGCTACCATTGAACTGTGCAGTACCCATGCAAATGACGCTTCTGCC
CTGAGGATTCTTTTTTCTTCCTTGATCTTGATCTCAAAATTGTTCTACAGTTTAAACTTTCAGG
ATCTCCCTGAGTTCTTTGAAGATAATATGGAAACTTGGATGAACAATTTTCATACCCTCTTGAC
ATTGGATAATAAACTCCTACAAACTGATGACGAAGAGGAAGCAGGCTTACTGGAGCTTTTAAAG
TCTCAGATCTGTGACAATGCTGCTCTCTATGCACAAAAGTACGATGAAGAGTTTCAGCGCTACC
TCCCTCGTTTTGTCACTGCCATCTGGAATTTGCTAGTTACCACAGGTCAAGAGGTTAAATATGA
TTTGTTGGTAAGTAATGCAATTCAGTTTCTGGCTTCAGTTTGCGAAAGACCACATTATAAGAAT
CTGTTTGAGGACCAGAACACCCTGACAAGTATCTGTGAAAAAGTTATTGTGCCTAACATGGAAT
TTAGAGCTGCTGATGAAGAGGCCTTTGAAGATAACTCTGAAGAGTACATAAGGAGGGACTTGGA
AGGCTCTGATATTGATACTAGACGCAGGGCTGCTTGTGATCTTGTACGAGGATTATGCAAATTT
TTTGAAGGTCCTGTGACAGGAATCTTCTCTGGTTATGTTAATTCCATGCTCCAGGAATATGCAA
AAAATCCATCTGTCAACTGGAAACACAAAGATGCGGCTATTTACCTTGTCACGTCTTTGGCATC
AAAAGCCCAAACACAGAAGCATGGAATCACACAAGCCAATGAACTTGTAAACCTAACTGAATTT
TTTGTGAATCACATACTTCCAGATTTAAAATCAAATAATGTGAATGAGTTTCCCGTGCTTAAAG
CTGATGGCATCAAATATATTATGATTTTTAGGAATCAAGTACCAAAAGAGCACCTTTTAGTCTC
CATCCCTCTCTTAATCAGTCACTTGGGGGCTGAAAGCATTGTTGTTCATACTTACGCCGCACAC
GCTCTCGAGAGACTGTTCACCATGAGGGGGCCGAACAACGCCACTCTTTTTACAGCTGCAGAAA
TCGCACCGTTTGTTGGGATTCTGCTAACAAACCTTTTCAAAGCTCTCACACTTCCTGGCTCTTC
AGAAAATGAATATATTATGAAAGCCATCATGAGAAGTTTCTCCCTCCTGCAAGAAGCCATCATC
CCCTACATCCCTACCCTGATCACTCAGCTCACACAGAAGCTGCTGGCTGTTAGTAAGAATCCCA
GCAAACCTCATTTCAATCACTACATGTTTGAAGCAATATGTTTGTCTATAAGAATAACCTGCAA
AGCTAACCCTGCTGCTGTTGTGAACTTTGAGGAGGCTCTCTTCCTCGTGTTCACTGAGATCTTA
CAAAATGATGTGCAAGAGTTCATCCCATACGTCTTTCAAGTGATGTCTTTACTTCTGGAAACAC
ATAAAAATGATATCCCATCTTCCTATATGGCCTTGTTTCCCCACCTCCTTCAGCCGGTACTCTG
GGAAAGGGCAGGAAATATCCCTGCTCTGGTGAGGCTGCTCCAGGCATTCTTAGAGCGGGGCTCC
AGTACAATAGCGACTGCTGCAGCTGACAAAATTCCTGGATTACTGGGTGTCTTCCAGAAGTTGA
TTGCATCCAAGGCAAACGATCACCAAGGTTTCTATCTTCTCAACAGTATAATAGAGCACATGCC
TCCTGAGTCAGTTGACCAGTACAGGAAGCAGATCTTCATCCTACTGTTCCAGAGACTGCAAAAC
TCCAAGACCACCAAGTTTATCAAGAGTTTCTTGGTGTTTATTAACTTATATTGCATTAAGTATG
GGGCACTGGCATTACAAGAAATATTTGATGGCATACAGCCAAAAATGTTTGGAATGGTTTTGGA
AAAAATCATTATTCCAGAGATTCAAAAGGTATCTGGAAATGTGGAGAAGAAAATCTGTGCAGTT
GGCATAACCAAATTACTCACAGAGTGTCCAGCAATGATGGACACTGAGTACACCAAGCTGTGGA
CTCCGTTGTTACAGTCTCTCATTGGCCTGTTTGAGTTACCTGAAGATGACAGCATCCCTGACGA
AGAGCACTTCATTGACATAGAAGACACCCCAGGGTACCAGACTGCCTTCTCACAGCTGGCGTTT
GCTGGTAAAAAGGAGTATGACCCTGTGGGTCAGACGGTGAACAACCCCAGGGTCCATCTGGCAC
AGGCACTTCACAGACTGTCTACTGCCTGTCCGGGAAGGGTTCCCTCGATGGTGAGCACCAGCCT
CAATGCAGAAGCCTTGCAGTACCTCCAAGGTTACCTGCAGGCAGCCAGTGTGACCCTGTTGTGA
ACTGCATCTTCCTGACCCATGGGGGGCTGAGGATGGTTTCTTAGGAACCATGTGGACTTCTGAG
CACGGCCCTGCTGAAGCATCACAGGTTTCCAACCTCTTGAACTTGTCAGACTCTCACAGAGGAC
AGTAAATACTGCTGTAAGCCAATGAGGTTTGTCTTGATCACCAATATAACTGATAACTTGTCTG
GTTTGTCCTTAATGGGACAAGTATTTACAACCCCATGTATGGCCATGGTCTCTGTGGAGCATTT
GCACGGTTTGGGTTATTTCAAATTTTTGTCAGACCGTGACTGTGGAGACTTATTTCTGTTGTTT
TGTTTTGAAGCTTGTATTTCTCTTGTCTTTGTGTTTGTTGTCTGTTTCTTTAAGCTTTTATTGG
AAATATGAAAAGAATCTCTTGTTGACTTGCAATGCACATTTCATAGTCTGTAATCAGCAATAAA
AACCCAAAATGTGTATCTAAAAGTGTCAAGGACAGGATTTTGGTGCTTTCTAAAACTTTGATAA
AATGAAGAATTTCTTTAAATCTACTTTCCCCACCTGGACTCCATAAAAATACTAATTTTTAAAT
C

hide sequence

RefSeq Acc Id:

XM_006235648 ⟹ XP_006235710

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	155,641,114 - 155,678,862 (+)	NCBI
Rnor_6.0	3	163,664,074 - 163,702,074 (+)	NCBI
Rnor_5.0	3	169,824,936 - 169,862,578 (+)	NCBI

Sequence:

show sequence

TCGCACATGCGCTGTGGCCGCCACCTTCGCCGCCGCGCCATTTTGCCAGGGTTTGAATGTGAGG
CGGAGCAGCCGCTGGAGTGGGTAGTGTCGGCTTGTAGCTCTCGCTTGGGATTCCCTCCTCGGTC
TCGGCGTCCCCACGAGATACAAGGAAGGCCTCAGAAATGCAATAGACAAAGAGATTCAGAGTCA
TGGAGCTCAGCGATGCCAATCTTCAGACACTGACAGAGTATTTAAAGAAAACCCTGGATCCTGA
CCCTGCCATCAGACGGCCAGCTGAGAAATTTCTCGAATCTGTAGAAGGAAATCAGAATTACCCA
CTGTTGCTTTTAACATTATTGGAAAAGTCACAGGATAATGTCATTAAAGTATGTGCTTCAGTAA
CCTTCAAGAACTATATTAAAAGGAATTGGAGAATTGTTGAAGATGAACCAAACAAAATTTGTGA
AGCTGATCGAGTAGCTATAAAAGCCAACATAGTGCACCTGATGCTGAGCAGCCCAGAGCAGATC
CAGAAGCAGCTGAGTGATGCTATTAGCATTGTTGGCAGAGAAGATTTCCCTCAAAAATGGCCGG
ACTTGCTGACAGAAATGGTGAATCGCTTTCAGAGTGGAGATTTCCATGTCATTAATGGAGTCCT
GCGTACAGCGCATTCACTGTTTAAAAGATACCGGCATGAGTTTAAGTCAAATGAGCTGTGGACT
GAGATTAAACTTGTCTTGGATGCCTTTGCTCTGCCTTTGACTAATTTATTTAAGGCTACCATTG
AACTGTGCAGTACCCATGCAAATGACGCTTCTGCCCTGAGGATTCTTTTTTCTTCCTTGATCTT
GATCTCAAAATTGTTCTACAGTTTAAACTTTCAGGATCTCCCTGAGTTCTTTGAAGATAATATG
GAAACTTGGATGAACAATTTTCATACCCTCTTGACATTGGATAATAAACTCCTACAAACTGATG
ACGAAGAGGAAGCAGGCTTACTGGAGCTTTTAAAGTCTCAGATCTGTGACAATGCTGCTCTCTA
TGCACAAAAGTACGATGAAGAGTTTCAGCGCTACCTCCCTCGTTTTGTCACTGCCATCTGGAAT
TTGCTAGTTACCACAGGTCAAGAGGTTAAATATGATTTGTTGGTAAGTAATGCAATTCAGTTTC
TGGCTTCAGTTTGCGAAAGACCACATTATAAGAATCTGTTTGAGGACCAGAACACCCTGACAAG
TATCTGTGAAAAAGTTATTGTGCCTAACATGGAATTTAGAGCTGCTGATGAAGAGGCCTTTGAA
GATAACTCTGAAGAGTACATAAGGAGGGACTTGGAAGGCTCTGATATTGATACTAGACGCAGGG
CTGCTTGTGATCTTGTACGAGGATTATGCAAATTTTTTGAAGGTCCTGTGACAGGAATCTTCTC
TGGTTATGTTAATTCCATGCTCCAGGAATATGCAAAAAATCCATCTGTCAACTGGAAACACAAA
GATGCGGCTATTTACCTTGTCACGTCTTTGGCATCAAAAGCCCAAACACAGAAGCATGGAATCA
CACAAGCCAATGAACTTGTAAACCTAACTGAATTTTTTGTGAATCACATACTTCCAGATTTAAA
ATCAAATAATGTGAATGAGTTTCCCGTGCTTAAAGCTGATGGCATCAAATATATTATGATTTTT
AGGAATCAAGTACCAAAAGAGCACCTTTTAGTCTCCATCCCTCTCTTAATCAGTCACTTGGGGG
CTGAAAGCATTGTTGTTCATACTTACGCCGCACACGCTCTCGAGAGACTGTTCACCATGAGGGG
GCCGAACAACGCCACTCTTTTTACAGCTGCAGAAATCGCACCGTTTGTTGGGATTCTGCTAACA
AACCTTTTCAAAGCTCTCACACTTCCTGGCTCTTCAGAAAATGAATATATTATGAAAGCCATCA
TGAGAAGTTTCTCCCTCCTGCAAGAAGCCATCATCCCCTACATCCCTACCCTGATCACTCAGCT
CACACAGAAGCTGCTGGCTGTTAGTAAGAATCCCAGCAAACCTCATTTCAATCACTACATGTTT
GAAGCAATATGTTTGTCTATAAGAATAACCTGCAAAGCTAACCCTGCTGCTGTTGTGAACTTTG
AGGAGGCTCTCTTCCTCGTGTTCACTGAGATCTTACAAAATGATGTGCAAGAGTTCATCCCATA
CGTCTTTCAAGTGATGTCTTTACTTCTGGAAACACATAAAAATGATATCCCATCTTCCTATATG
GCCTTGTTTCCCCACCTCCTTCAGCCGGTACTCTGGGAAAGGGCAGGAAATATCCCTGCTCTGG
TGAGGCTGCTCCAGGCATTCTTAGAGCGGGGCTCCAGTACAATAGCGACTGCTGCAGCTGACAA
AATTCCTGGATTACTGGGTGTCTTCCAGAAGTTGATTGCATCCAAGGCAAACGATCACCAAGGT
TTCTATCTTCTCAACAGTATAATAGAGCACATGCCTCCTGAGTCAGTTGACCAGTACAGGAAGC
AGATCTTCATCCTACTGTTCCAGAGACTGCAAAACTCCAAGACCACCAAGTTTATCAAGAGTTT
CTTGGTGTTTATTAACTTATATTGCATTAAGTATGGGGCACTGGCATTACAAGAAATATTTGAT
GGCATACAGCCAAAAATGTTTGGAATGGTTTTGGAAAAAATCATTATTCCAGAGATTCAAAAGG
TATCTGGAAATGTGGAGAAGAAAATCTGTGCAGTTGGCATAACCAAATTACTCACAGAGTGTCC
AGCAATGATGGACACTGAGTACACCAAGCTGTGGACTCCGTTGTTACAGTCTCTCATTGGCCTG
TTTGAGTTACCTGAAGATGACAGCATCCCTGACGAAGAGCACTTCATTGACATAGAAGACACCC
CAGGGTACCAGACTGCCTTCTCACAGCTGGCGTTTGCTGGTAAAAAGGAGTATGACCCTGTGGG
TCAGACGGTGAACAACCCCAGGGTCCATCTGGCACAGGCACTTCACAGACTGTCTACTGCCTGT
CCGGGAAGGGTTCCCTCGATGGTGAGCACCAGCCTCAATGCAGAAGCCTTGCAGTACCTCCAAG
GTTACCTGCAGGCAGCCAGTGTGACCCTGTTGTGAACTGCATCTTCCTGACCCATGGGGGGCTG
AGGATGGTTTCTTAGGAACCATGTGGACTTCTGAGCACGGCCCTGCTGAAGCATCACAGGTTTC
CAACCTCTTGAACTTGTCAGACTCTCACAGAGGACAGTAAATACTGCTGTAAGCCAATGAGGTT
TGTCTTGATCACCAATATAACTGATAACTTGTCTGGTTTGTCCTTAATGGGACAAGTATTTACA
ACCCCATGTATGGCCATGGTCTCTGTGGAGCATTTGCACGGTTTGGGTTATTTCAAATTTTTGT
CAGACCGTGACTGTGGAGACTTATTTCTGTTGTTTTGTTTTGAAGCTTGTATTTCTCTTGTCTT
TGTGTTTGTTGTCTGTTTCTTTAAGCTTTTATTGGAAATATGAAAAGAATCTCTTGTTGACTTG
CAATGCACATTTCATAGTCTGTAATCAGCAATAAAAACCCAAAATGTGTATCTAAAAGTGTCAA
GGACAGGATTTTGGTGCTTTCTAAAACTTTGATAAAATGAAGAATTTCTTTAAATCTACTTTCC
CCACCTGGACTCCATAAAAATACTAATTTTTAAATCATTTAAACTCAGAA

hide sequence

RefSeq Acc Id:

XR_005501943

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	155,641,104 - 155,678,866 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102077	(Get FASTA)	NCBI Sequence Viewer
	XP_006235710	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96428	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102077 ⟸ NM_001108607

- UniProtKB:

D3ZPR0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKVCASV
TFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIVGREDFPQKWP
DLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATI
ELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD
DEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQF
LASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIRRDLEGSDIDTRRR
AACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGI
TQANELVNLTEFFVNHILPDLKSNNVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLISHLG
AESIVVHTYAAHALERLFTMRGPNNATLFTAAEIAPFVGILLTNLFKALTLPGSSENEYIMKAI
MRSFSLLQEAIIPYIPTLITQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNF
EEALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERAGNIPAL
VRLLQAFLERGSSTIATAAADKIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRK
QIFILLFQRLQNSKTTKFIKSFLVFINLYCIKYGALALQEIFDGIQPKMFGMVLEKIIIPEIQK
VSGNVEKKICAVGITKLLTECPAMMDTEYTKLWTPLLQSLIGLFELPEDDSIPDEEHFIDIEDT
PGYQTAFSQLAFAGKKEYDPVGQTVNNPRVHLAQALHRLSTACPGRVPSMVSTSLNAEALQYLQ
GYLQAASVTLL

hide sequence

RefSeq Acc Id:	XP_006235710 ⟸ XM_006235648
- Peptide Label:	isoform X1
- UniProtKB:	D3ZPR0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKVCASV TFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIVGREDFPQKWP DLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATI ELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD DEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQF LASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIRRDLEGSDIDTRRR AACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGI TQANELVNLTEFFVNHILPDLKSNNVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLISHLG AESIVVHTYAAHALERLFTMRGPNNATLFTAAEIAPFVGILLTNLFKALTLPGSSENEYIMKAI MRSFSLLQEAIIPYIPTLITQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNF EEALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERAGNIPAL VRLLQAFLERGSSTIATAAADKIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRK QIFILLFQRLQNSKTTKFIKSFLVFINLYCIKYGALALQEIFDGIQPKMFGMVLEKIIIPEIQK VSGNVEKKICAVGITKLLTECPAMMDTEYTKLWTPLLQSLIGLFELPEDDSIPDEEHFIDIEDT PGYQTAFSQLAFAGKKEYDPVGQTVNNPRVHLAQALHRLSTACPGRVPSMVSTSLNAEALQYLQ GYLQAASVTLL hide sequence

RefSeq Acc Id:

ENSRNOP00000010210 ⟸ ENSRNOT00000010210

Protein Domains

Importin N-terminal

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692686

Promoter ID:

EPDNEW_R3211

Type:

initiation region

Name:

Cse1l_1

Description:

chromosome segregation 1 like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	163,664,096 - 163,664,156	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307536	AgrOrtholog
Ensembl Genes	ENSRNOG00000007665	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000010210	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010210	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	CAS_CSE1_C	UniProtKB/TrEMBL
	Exportin/Importin_Cse1-like	UniProtKB/TrEMBL
	Importin-b_N	UniProtKB/TrEMBL
KEGG Report	rno:362273	UniProtKB/TrEMBL
NCBI Gene	362273	ENTREZGENE
Pfam	CAS_CSE1	UniProtKB/TrEMBL
	Cse1	UniProtKB/TrEMBL
	IBN_N	UniProtKB/TrEMBL
PhenoGen	Cse1l	PhenoGen
PROSITE	IMPORTIN_B_NT	UniProtKB/TrEMBL
SMART	IBN_N	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	D3ZPR0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-04	Cse1l	chromosome segregation 1 like	Cse1l	CSE1 chromosome segregation 1 like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-04-13	Cse1l	CSE1 chromosome segregation 1 like	Cse1l	CSE1 chromosome segregation 1-like (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-02-04	Cse1l	CSE1 chromosome segregation 1-like (yeast)	Cse1l	chromosome segregation 1-like (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cse1l	chromosome segregation 1-like (S. cerevisiae)	Cse1l_predicted	chromosome segregation 1-like (S. cerevisiae) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cse1l_predicted	chromosome segregation 1-like (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)